jgi.p|Nanoce1779_2|327000, mRNA_2359 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|327000
Unique Name	mRNA_2359
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1147
Alignment location	scaffold_5:144384..145978 +

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Properties


Property Name	Value
TranscriptId	327086
Track	FilteredModels2
ProteinId	327000

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:144384..145978 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|327000	gene_2359	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|327000	mRNA_2359-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2359	CDS_2359	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:144384..145978+
coding sequence from alignment at scaffold_5:144384..145978+

mRNA sequence

>mRNA_2359 ID=mRNA_2359|Name=jgi.p|Nanoce1779_2|327000|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp
GGATTGGGTCCTATAGCTGGTGCCCTGTCGTATGACTGTGAAAGGAAAAA
CAATGCTATAGCTCAAAGACATCCGTGCTTGCACACTTGCTTGCTTCAAA
CCCGGCAAAATAATTTTCCGCCTCCCCCTCGACCTCGAGATTCGTCCACT
CAACCCTCACCCTCTCTTTTGCATCCACTCGACACATAAATGCCACAGGG
ACAATAGCATGGTCACCAGAGAGGCCGTGCTCTCACTACATCAGCCTCCA
AATGCTCTCAGAGGGGGCCGCACGCAGACAAATCAGCCAATCCCAACCAG
GACGACCTCCCCACCCCCACCCCTCGTCCCCGCATTCCTCCTCCCCTTCC
TCCTCCTCCTTCTCCCCTACTCCAATGCTTTGACAACGACTATGTGGCAC
ACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGCAACGGCGAG
TTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAAAATTGCCCTG
TCCCCAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACGCACATGGCCT
TCATGCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACCCGGGCAAGCA
TTTGCAAGGGCTCTCAGCAAACCTCCTGACCAAGTTATCACGGTCCATGG
GCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTCCCTCCCCAACAGTCCC
TCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATACAAAGTTGGAGGATGG
AGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAGGATGGCACCTTCTCCT
CCGGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACAGCCAAGCCG
ATGTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCAGGATGAGTC
CAAGGTAAGGAGGGAGAGAGGGGGGGAAGGGGGGAAGGAGGGAGGGAGAG
AGGGAGGGCTGAACCGTTTTTTTTAAAAAAATAAATAAATTAATAAACAA
CGATCTGGGTGGTGCCAGGAGAGGAAGGAAGGGAGGGAGGGAGGTTGGGG
AGGAATAACGGTATTGGTGAGCATAAATGTTCCATCTCATCAACCCCTTT
ATCCTTCCTCCTCCTTCTCCTTTTCCTCCTCCTCCTCCTTCTCCTCC

protein sequence of jgi.p|Nanoce1779_2|327000

>mRNA_2359-protein ID=mRNA_2359-protein|Name=jgi.p|Nanoce1779_2|327000|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MVTREAVLSLHQPPNALRGGRTQTNQPIPTRTTSPPPPLVPAFLLPFLLL
LLPYSNALTTTMWHTPSGSKYETNEQVATASYKESNEKPGTYIQNCPVPR
GDLFPLSQDPRTWPSCDDAYEVSWRLDPGKHLQGLSANLLTKLSRSMGFC
PHRRCQLSSLPNSPSPGVCPPGLCYTKLEDGAPTYGACCFEEDGTFSSGG
LLGYADLLRQTAKPMYKRNRVVLGGDPQDESKVRRERGGEGGKEGGREGG
LNRFF*

mRNA from alignment at scaffold_5:144384..145978+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2359 ID=mRNA_2359|Name=jgi.p|Nanoce1779_2|327000|organism=Nannochloropsis oceanica|type=mRNA|length=1595bp|location=Sequence derived from alignment at scaffold_5:144384..145978+ (Nannochloropsis oceanica)
GGATTGGGTCCTATAGCTGGTGCCCTGTCGTATGACTGTGAAAGGAAAAA
CAATGCTATAGCTCAAAGACATCCGTGCTTGCACACTTGCTTGCTTCAAA
CCCGGCAAAATAATTTTCCGCCTCCCCCTCGACCTCGAGATTCGTCCACT
CAACCCTCACCCTCTCTTTTGCATCCACTCGACACATAAATGCCACAGGG
ACAATAGCATGGTCACCAGAGAGGCCGTGCTCTCACTACATCAGCCTCCA
AATGCTCTCAGAGGGGGCCGCACGCAGACAAATCAGCCAATCCCAACCAG
GACGACCTCCCCACCCCCACCCCTCGTCCCCGCATTCCTCCTCCCCTTCC
TCCTCCTCCTTCTCCCCTACTCCAATGCTTTGACAACGACTATGTGGCAC
ACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGCAACGGCGAG
TTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAGTACGTCCACC
CTCGTCCTGCCCCTCTCTCTACATAGCCTTCTTTTTTACCCTCCTTCTGC
TTACCCTAACCCCTACTATGTCTTCTCTAGAAATTGCCCTGTCCCCAGAG
GCGACCTCTTCCCCCTGTCTCAAGATCCACGCACATGGCCTTCATGCGAC
GATGCCTATGAGGTGTCGTGGCGCCTTGACCCGGGCAAGCATTTGCAAGG
GCTCTCAGGTAGGGAGGTAGAAAGGGAGGGTGATAAATATACACAGGGAA
GATAGAGGAGTGAAAGGAAAGCGAGGCCCGCATGTGCCCATTTGGAATGC
TTACATGAACGGTACATCTCTCTCTCTTTTCGCTACTCCATCTGCTCCTC
CTGCTCCTCCTGCTCCTCCCCCTCCCCCTTCTCCTCCTGCTCCTCCTCCT
CCTCTCCCTCCTCTTGCGCCATAGCAAACCTCCTGACCAAGTTATCACGG
TCCATGGGCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTCCCTCCCCAA
CAGTCCCTCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATACAAAGTTGG
AGGATGGAGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAGGATGGTGAG
GGAGAGACGGAGAAAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGAGGG
GGGACGAACATTACATTCAGGATACCTCCACACCACTGTTGGCGAGAACT
CACCCTCCCTCCCTCCCTCCCACCCTCCAATCCCAGGCACCTTCTCCTCC
GGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACAGCCAAGCCGAT
GTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCAGGATGAGTCCA
AGGTAAGGAGGGAGAGAGGGGGGGAAGGGGGGAAGGAGGGAGGGAGAGAG
GGAGGGCTGAACCGTTTTTTTTAAAAAAATAAATAAATTAATAAACAACG
ATCTGGGTGGTGCCAGGAGAGGAAGGAAGGGAGGGAGGGAGGTTGGGGAG
GAATAACGGTATTGGTGAGCATAAATGTTCCATCTCATCAACCCCTTTAT
CCTTCCTCCTCCTTCTCCTTTTCCTCCTCCTCCTCCTTCTCCTCC

Coding sequence (CDS) from alignment at scaffold_5:144384..145978+

>mRNA_2359 ID=mRNA_2359|Name=jgi.p|Nanoce1779_2|327000|organism=Nannochloropsis oceanica|type=CDS|length=3072bp|location=Sequence derived from alignment at scaffold_5:144384..145978+ (Nannochloropsis oceanica)
ATGGTCACCAGAGAGGCCGTGCTCTCACTACATCAGCCTCCAAATGCTCT
CAGAGGGGGCCGCACGCAGACAAATCAGCCAATCCCAACCAGGACGACCT
CCCCACCCCCACCCCTCGTCCCCGCATTCCTCCTCCCCTTCCTCCTCCTC
CTTCTCCCCTACTCCAATGCTTTGACAACGACTATGTGGCACACACCAAG
TGGCAGCAAATATGAAACTAATGAGCAAGTTGCAACGGCGAGTTATAAAG
AATCCAACGAGAAGCCAGGGACCTATATTCAAAATTGCCCTGTCCCCAGA
GGCGACCTCTTCCCCCTGTCTCAAGATCCACGCACATGGCCTTCATGCGA
CGATGCCTATGAGGTGTCGTGGCGCCTTGACCCGGGCAAGCATTTGCAAG
GGCTCTCAGCAAACCTCCTGACCAAGTTATCACGGTCCATGGGCTTTTGC
CCGCATCGTCGTTGTCAGCTCTCCTCCCTCCCCAACAGTCCCTCGCCTGG
CGTATGCCCCCCTGGCCTGTGCTATACAAAGTTGGAGGATGGAGCCCCTA
CGTATGGCGCGTGTTGTTTCGAGGAGGATGGCACCTTCTCCTCCGGGGGG
CTACTGGGTTATGCCGACCTCTTGCGACAGACAGCCAAGCCGATGTACAA
ACGAAATCGGGTGGTGCTAGGAGGGGATCCGCAGGATGAGTCCAAGGTAA
GGAGGGAGAGAGGGGGGGAAGGGGGGAAGGAGGGAGGGAGAGAGGGAGGG
CTGAACCGTTTTTTTTAAATGGTCACCAGAGAGGCCGTGCTCTCACTACA
TCAGCCTCCAAATGCTCTCAGAGGGGGCCGCACGCAGACAAATCAGCCAA
TCCCAACCAGGACGACCTCCCCACCCCCACCCCTCGTCCCCGCATTCCTC
CTCCCCTTCCTCCTCCTCCTTCTCCCCTACTCCAATGCTTTGACAACGAC
TATGTGGCACACACCAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTG
CAACGGCGAGTTATAAAGAATCCAACGAGAAGCCAGGGACCTATATTCAA
AATTGCCCTGTCCCCAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACG
CACATGGCCTTCATGCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACC
CGGGCAAGCATTTGCAAGGGCTCTCAGCAAACCTCCTGACCAAGTTATCA
CGGTCCATGGGCTTTTGCCCGCATCGTCGTTGTCAGCTCTCCTCCCTCCC
CAACAGTCCCTCGCCTGGCGTATGCCCCCCTGGCCTGTGCTATACAAAGT
TGGAGGATGGAGCCCCTACGTATGGCGCGTGTTGTTTCGAGGAGGATGGC
ACCTTCTCCTCCGGGGGGCTACTGGGTTATGCCGACCTCTTGCGACAGAC
AGCCAAGCCGATGTACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGC
AGGATGAGTCCAAGGTAAGGAGGGAGAGAGGGGGGGAAGGGGGGAAGGAG
GGAGGGAGAGAGGGAGGGCTGAACCGTTTTTTTTAAATGGTCACCAGAGA
GGCCGTGCTCTCACTACATCAGCCTCCAAATGCTCTCAGAGGGGGCCGCA
CGCAGACAAATCAGCCAATCCCAACCAGGACGACCTCCCCACCCCCACCC
CTCGTCCCCGCATTCCTCCTCCCCTTCCTCCTCCTCCTTCTCCCCTACTC
CAATGCTTTGACAACGACTATGTGGCACACACCAAGTGGCAGCAAATATG
AAACTAATGAGCAAGTTGCAACGGCGAGTTATAAAGAATCCAACGAGAAG
CCAGGGACCTATATTCAAAATTGCCCTGTCCCCAGAGGCGACCTCTTCCC
CCTGTCTCAAGATCCACGCACATGGCCTTCATGCGACGATGCCTATGAGG
TGTCGTGGCGCCTTGACCCGGGCAAGCATTTGCAAGGGCTCTCAGCAAAC
CTCCTGACCAAGTTATCACGGTCCATGGGCTTTTGCCCGCATCGTCGTTG
TCAGCTCTCCTCCCTCCCCAACAGTCCCTCGCCTGGCGTATGCCCCCCTG
GCCTGTGCTATACAAAGTTGGAGGATGGAGCCCCTACGTATGGCGCGTGT
TGTTTCGAGGAGGATGGCACCTTCTCCTCCGGGGGGCTACTGGGTTATGC
CGACCTCTTGCGACAGACAGCCAAGCCGATGTACAAACGAAATCGGGTGG
TGCTAGGAGGGGATCCGCAGGATGAGTCCAAGGTAAGGAGGGAGAGAGGG
GGGGAAGGGGGGAAGGAGGGAGGGAGAGAGGGAGGGCTGAACCGTTTTTT
TTAAATGGTCACCAGAGAGGCCGTGCTCTCACTACATCAGCCTCCAAATG
CTCTCAGAGGGGGCCGCACGCAGACAAATCAGCCAATCCCAACCAGGACG
ACCTCCCCACCCCCACCCCTCGTCCCCGCATTCCTCCTCCCCTTCCTCCT
CCTCCTTCTCCCCTACTCCAATGCTTTGACAACGACTATGTGGCACACAC
CAAGTGGCAGCAAATATGAAACTAATGAGCAAGTTGCAACGGCGAGTTAT
AAAGAATCCAACGAGAAGCCAGGGACCTATATTCAAAATTGCCCTGTCCC
CAGAGGCGACCTCTTCCCCCTGTCTCAAGATCCACGCACATGGCCTTCAT
GCGACGATGCCTATGAGGTGTCGTGGCGCCTTGACCCGGGCAAGCATTTG
CAAGGGCTCTCAGCAAACCTCCTGACCAAGTTATCACGGTCCATGGGCTT
TTGCCCGCATCGTCGTTGTCAGCTCTCCTCCCTCCCCAACAGTCCCTCGC
CTGGCGTATGCCCCCCTGGCCTGTGCTATACAAAGTTGGAGGATGGAGCC
CCTACGTATGGCGCGTGTTGTTTCGAGGAGGATGGCACCTTCTCCTCCGG
GGGGCTACTGGGTTATGCCGACCTCTTGCGACAGACAGCCAAGCCGATGT
ACAAACGAAATCGGGTGGTGCTAGGAGGGGATCCGCAGGATGAGTCCAAG
GTAAGGAGGGAGAGAGGGGGGGAAGGGGGGAAGGAGGGAGGGAGAGAGGG
AGGGCTGAACCGTTTTTTTTAA

Synonyms

Publications