jgi.p|Nanoce1779_2|525417, mRNA_2358 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525417
Unique NamemRNA_2358
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length882
Alignment locationscaffold_5:142736..143974 -

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Properties
Property NameValue
TranscriptId525503
TrackFilteredModels2
ProteinId525417
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:142736..143974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525417gene_2358Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525417mRNA_2358-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2358CDS_2358Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2358 ID=mRNA_2358|Name=jgi.p|Nanoce1779_2|525417|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAAAACACGGCATGGCTCTGT
ATGGGTAAGCACACATACACAGGTATGGACTCCTTCCCATCATCATCCAA
TCTCTCTCTCCCTCCCTCCTCTCTCACCTCCAGGTATCTTCGGGTTCACC
TACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCTGGC
GGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATCGAT
GGAGCAACTATTGGACAGCGATAGACAACACTCTCATCATGGGCGCGGCG
CCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGCGATCTAGGCGTGAC
GGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCCTATCCGAATGTACC
AACGCCACGGCATCGAGCAGCTCTACCTCCCCACGGTGGACCACTTCGAA
CCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATCTCCCTGCGCCA
CGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGGGCATGGTCGCT
CCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATCCAGGTGTAAGC
ATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCCGCAAGAC
GCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGGGGCTTGC
AGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAGGAAGGAG
GGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGAAGATTGC
GATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGAAGGGGGG
ATGGAAGGACCGGGGCGGGAAGGAGGAGATGA
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protein sequence of jgi.p|Nanoce1779_2|525417

>mRNA_2358-protein ID=mRNA_2358-protein|Name=jgi.p|Nanoce1779_2|525417|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MACQAQVPWPKTRHGSVWVSTHTQVWTPSHHHPISLSLPPLSPPGIFGFT
YLLFQKKLLPFRYARLAAKLFFWPTIPITILNRWSNYWTAIDNTLIMGAA
PLAALGHVESLRDLGVTGVINLCDEYAGPIRMYQRHGIEQLYLPTVDHFE
PTISDLYRAVEFISLRHAKGEKCFVHCKAGHGRSAAVALSWLATQNPGVS
IQLLNQRLGEKRKVRKTLYKQNCVKGFLREWGLQSKGVKKGEVEMVERKE
GSVEEEEGGGGGRGKIAMTTRKKGQQQVVKGRGDGRTGAGRRR*
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mRNA from alignment at scaffold_5:142736..143974-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2358 ID=mRNA_2358|Name=jgi.p|Nanoce1779_2|525417|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at scaffold_5:142736..143974- (Nannochloropsis oceanica)
ATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAAAACACGGCATGGCTCTGT
ATGGGTAAGCACACATACACAGGTATGGACTCCTTCCCATCATCATCCAA
TCTCTCTCTCCCTCCCTCCTCTCTCACCTCCAGGTATCTTCGGGTTCACC
TACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCTGGC
GGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATCGAT
GGAGCAACTATTGGACAGCGATAGACAGTACGACAGGGAGGGAAAGAGGA
AGGGAAGGAGGGTCGCATCCCCGCGAAGGCTGCATTTCCTCTTATCCCTC
CACTCTCCCCTCATCCCCCCCTTTCCTATCAAAAAAAGACACTCTCATCA
TGGGCGCGGCGCCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGCGAT
CTAGGCGTGACGGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCCTAT
CCGAATGTACCAACGGTGAGCTTCCCTCCCTCCCTCCCTCCTTCCCTCTC
GCCGCCCGCCCATGCATCCCGTCCTAACCCCCTCTCTCTTCCTTTCCTTC
TCCCCTTGTCAGCCACGGCATCGAGCAGCTCTACCTCCCCACGGTGGACC
ACTTCGAACCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATCTCC
CTGCGCCACGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGGGCA
TGGTCGCTCCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATCCAG
GTAAGCCCGTCAGCCAGCCCTCCCTCCCTCCCTTTACCCCTCCCTTCCTA
AATGGGGCTTCAGCCAGAACAGAGGGCAGTCTTTCACTCACGCACTCGCC
CCCCCCCCCCTTCCTTCCTCCCTTGCTGCCTCCCTCCTCCTTCCTTAAGG
TGTAAGCATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCC
GCAAGACGCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGG
GGCTTGCAGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAG
GAAGGAGGGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGA
AGATTGCGATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGA
AGGGGGGATGGAAGGACCGGGGCGGGAAGGAGGAGATGA
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Coding sequence (CDS) from alignment at scaffold_5:142736..143974-

>mRNA_2358 ID=mRNA_2358|Name=jgi.p|Nanoce1779_2|525417|organism=Nannochloropsis oceanica|type=CDS|length=3528bp|location=Sequence derived from alignment at scaffold_5:142736..143974- (Nannochloropsis oceanica)
GTGTAAGCATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTC
CGCAAGACGCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTG
GGGCTTGCAGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGA
GGAAGGAGGGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGG
AAGATTGCGATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGG
AAGGGGGGATGGAAGGACCGGGGCGGGAAGGAGGAGATGACCACGGCATC
GAGCAGCTCTACCTCCCCACGGTGGACCACTTCGAACCTACCATCTCCGA
CCTCTACCGCGCTGTGGAGTTCATCTCCCTGCGCCACGCCAAGGGCGAGA
AGTGCTTCGTGCACTGCAAAGCAGGGCATGGTCGCTCCGCTGCAGTTGCC
CTTTCTTGGCTGGCGACACAGAATCCAGACACTCTCATCATGGGCGCGGC
GCCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGCGATCTAGGCGTGA
CGGGCGTCATAAATCTCTGCGACGAGTACGCAGGCCCTATCCGAATGTAC
CAACGATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAAAACACGGCATGGC
TCTGTATGGGTAAGCACACATACACAGGTATGGACTCCTTCCCATCATCA
TCCAATCTCTCTCTCCCTCCCTCCTCTCTCACCTCCAGGTATCTTCGGGT
TCACCTACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGC
CTGGCGGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAA
TCGATGGAGCAACTATTGGACAGCGATAGACAGTGTAAGCATCCAACTCC
TCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCCGCAAGACGCTGTACAAA
CAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGGGGCTTGCAGTCCAAGGG
CGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAGGAAGGAGGGGTCAGTGG
AGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGAAGATTGCGATGACAACG
AGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGAAGGGGGGATGGAAGGAC
CGGGGCGGGAAGGAGGAGATGACCACGGCATCGAGCAGCTCTACCTCCCC
ACGGTGGACCACTTCGAACCTACCATCTCCGACCTCTACCGCGCTGTGGA
GTTCATCTCCCTGCGCCACGCCAAGGGCGAGAAGTGCTTCGTGCACTGCA
AAGCAGGGCATGGTCGCTCCGCTGCAGTTGCCCTTTCTTGGCTGGCGACA
CAGAATCCAGACACTCTCATCATGGGCGCGGCGCCTCTCGCCGCTCTCGG
TCACGTGGAGTCCTTGCGCGATCTAGGCGTGACGGGCGTCATAAATCTCT
GCGACGAGTACGCAGGCCCTATCCGAATGTACCAACGATGGCTTGCCAGG
CGCAGGTGCCTTGGCCCAAAACACGGCATGGCTCTGTATGGGTAAGCACA
CATACACAGGTATGGACTCCTTCCCATCATCATCCAATCTCTCTCTCCCT
CCCTCCTCTCTCACCTCCAGGTATCTTCGGGTTCACCTACCTCCTGTTCC
AAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCTGGCGGCCAAGCTTTTT
TTCTGGCCCACCATACCTATCACCATATTGAATCGATGGAGCAACTATTG
GACAGCGATAGACAGTGTAAGCATCCAACTCCTCAACCAGAGGCTGGGGG
AAAAGCGCAAAGTCCGCAAGACGCTGTACAAACAAAATTGTGTCAAAGGC
TTCCTGAGGGAGTGGGGCTTGCAGTCCAAGGGCGTGAAGAAGGGAGAAGT
CGAGATGGTGGAGAGGAAGGAGGGGTCAGTGGAGGAGGAGGAGGGAGGAG
GAGGAGGGAGGGGGAAGATTGCGATGACAACGAGGAAAAAGGGGCAGCAG
CAGGTCGTGAAGGGAAGGGGGGATGGAAGGACCGGGGCGGGAAGGAGGAG
ATGACCACGGCATCGAGCAGCTCTACCTCCCCACGGTGGACCACTTCGAA
CCTACCATCTCCGACCTCTACCGCGCTGTGGAGTTCATCTCCCTGCGCCA
CGCCAAGGGCGAGAAGTGCTTCGTGCACTGCAAAGCAGGGCATGGTCGCT
CCGCTGCAGTTGCCCTTTCTTGGCTGGCGACACAGAATCCAGACACTCTC
ATCATGGGCGCGGCGCCTCTCGCCGCTCTCGGTCACGTGGAGTCCTTGCG
CGATCTAGGCGTGACGGGCGTCATAAATCTCTGCGACGAGTACGCAGGCC
CTATCCGAATGTACCAACGATGGCTTGCCAGGCGCAGGTGCCTTGGCCCA
AAACACGGCATGGCTCTGTATGGGTAAGCACACATACACAGGTATGGACT
CCTTCCCATCATCATCCAATCTCTCTCTCCCTCCCTCCTCTCTCACCTCC
AGGTATCTTCGGGTTCACCTACCTCCTGTTCCAAAAGAAGCTTCTTCCCT
TCCGGTACGCCCGCCTGGCGGCCAAGCTTTTTTTCTGGCCCACCATACCT
ATCACCATATTGAATCGATGGAGCAACTATTGGACAGCGATAGACAGTGT
AAGCATCCAACTCCTCAACCAGAGGCTGGGGGAAAAGCGCAAAGTCCGCA
AGACGCTGTACAAACAAAATTGTGTCAAAGGCTTCCTGAGGGAGTGGGGC
TTGCAGTCCAAGGGCGTGAAGAAGGGAGAAGTCGAGATGGTGGAGAGGAA
GGAGGGGTCAGTGGAGGAGGAGGAGGGAGGAGGAGGAGGGAGGGGGAAGA
TTGCGATGACAACGAGGAAAAAGGGGCAGCAGCAGGTCGTGAAGGGAAGG
GGGGATGGAAGGACCGGGGCGGGAAGGAGGAGATGACCACGGCATCGAGC
AGCTCTACCTCCCCACGGTGGACCACTTCGAACCTACCATCTCCGACCTC
TACCGCGCTGTGGAGTTCATCTCCCTGCGCCACGCCAAGGGCGAGAAGTG
CTTCGTGCACTGCAAAGCAGGGCATGGTCGCTCCGCTGCAGTTGCCCTTT
CTTGGCTGGCGACACAGAATCCAGACACTCTCATCATGGGCGCGGCGCCT
CTCGCCGCTCTCGGTCACGTGGAGTCCTTGCGCGATCTAGGCGTGACGGG
CGTCATAAATCTCTGCGACGAGTACGCAGGCCCTATCCGAATGTACCAAC
GATGGCTTGCCAGGCGCAGGTGCCTTGGCCCAAAACACGGCATGGCTCTG
TATGGGTAAGCACACATACACAGGTATGGACTCCTTCCCATCATCATCCA
ATCTCTCTCTCCCTCCCTCCTCTCTCACCTCCAGGTATCTTCGGGTTCAC
CTACCTCCTGTTCCAAAAGAAGCTTCTTCCCTTCCGGTACGCCCGCCTGG
CGGCCAAGCTTTTTTTCTGGCCCACCATACCTATCACCATATTGAATCGA
TGGAGCAACTATTGGACAGCGATAGACA
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Synonyms
Publications