jgi.p|Nanoce1779_2|326893, mRNA_2357 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|326893
Unique NamemRNA_2357
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length907
Alignment locationscaffold_5:140470..141853 -

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Properties
Property NameValue
TranscriptId326979
TrackFilteredModels2
ProteinId326893
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:140470..141853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326893gene_2357Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326893mRNA_2357-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2357CDS_2357Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2357 ID=mRNA_2357|Name=jgi.p|Nanoce1779_2|326893|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
AGGAAGGGAGGAAACTATGAGAATTGGAGGGAGAGGGTGGGGGGAGGAGG
ATGACGACCAAGAGCAGTGCAGATGCTGCCAGGACTAGAGTACTGGTTGG
GAGCAGAAGGTTTAGGAGGAAAGGAAATGAAGAATGCATGAGTGGCAATC
CCTACGGATGTCTTAGTTGTGTATGTTGCATTCCCGTACTGACGCGTGCC
ACATCCAACGACGGTCATCATGCCTTTCACTTTCATTCACATCATATATA
TAATGCCTTTCACTTCCGTTTACATCCTCCCTTCCCTTGTCATCCTCTAC
ATCCAAACAGGGACGCGCTTGGTCGCAAGGTAGAGGCGGACATTGAGGCT
AAGACGGATTTTAATTCGCTCAAGAACCAGTGGGACAGCATCGAGAAGGA
CTTCCACACCTGGTCTAAGGAGGTCGCTCCCATCGACTGGGCCAAATACA
AGAGCAATATTGAGGCCCCGGGTTTCGTGGATTTTCTAAAGCAACGCTAC
GAGGGTATTGATTGGGCTCAGCTCAACGTGAAATTGAGCCAGGCAGAGGT
TGCGGCGGATAAGGCTGAGAAAGAGACGATGCTGAAGGAGGGCAGCGCAT
TGGTGTCTGCCGCGGAGAAGATTATCGAGGAAACGAAGCATAAGATGCAC
CTGGCCACTACCAAAAGGACGAACAAGGACTCTCTCGTGGAGGATGTGTG
GGAGAAGAACCCCTCGATCAAGGAGGAGGTGCTGGCCGAGATCGAGGATC
ACAAGTGGTTCAAGGACATTAAATAAACCTCGCCCTCCACCCCTCTTTCC
CTCGGTCTCTGCCCCTCCCTCCCTCCCTCTTTCGTCTTCGTGTGAGAGAC
GGAGAGGAGAAGGAGGGAAGGGGGAGGGAAGGAGGGCATGTTCGTTTTGT
GTCATGT
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protein sequence of jgi.p|Nanoce1779_2|326893

>mRNA_2357-protein ID=mRNA_2357-protein|Name=jgi.p|Nanoce1779_2|326893|organism=Nannochloropsis oceanica|type=polypeptide|length=242bp
MTTKSSADAARTRVLVGSRRFRRKGNEECMSGNPYGCLSCVCCIPVLTRA
TSNDGHHAFHFHSHHIYNAFHFRLHPPFPCHPLHPNRDALGRKVEADIEA
KTDFNSLKNQWDSIEKDFHTWSKEVAPIDWAKYKSNIEAPGFVDFLKQRY
EGIDWAQLNVKLSQAEVAADKAEKETMLKEGSALVSAAEKIIEETKHKMH
LATTKRTNKDSLVEDVWEKNPSIKEEVLAEIEDHKWFKDIK*
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mRNA from alignment at scaffold_5:140470..141853-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2357 ID=mRNA_2357|Name=jgi.p|Nanoce1779_2|326893|organism=Nannochloropsis oceanica|type=mRNA|length=1384bp|location=Sequence derived from alignment at scaffold_5:140470..141853- (Nannochloropsis oceanica)
AGGAAGGGAGGAAACTATGAGAATTGGAGGGAGAGGGTGGGGGGAGGAGG
ATGACGACCAAGAGCAGTGCAGATGCTGCCAGGACTAGAGTACTGGTTGG
GAGCAGAAGGTTTAGGAGGAAAGGAAATGAAGAATGCATGAGTGGCAATC
CCTACGGATGTCTTAGTTGTGTATGTTGCATTCCCGTACTGACGCGTGCC
ACATCCAACGACGGTCATCATGCCTTTCACTTTCATTCACATCATATATA
TAATGCCTTTCACTTCCGTTTACATCCTCCCTTCCCTTGTCATCCTCTAC
ATCCAAACAGGGACGCGCTTGGTCGCAAGGTAGAGGCGGACATTGAGGCT
AAGACGGATTTTAATTCGCTCAAGAACCAGTGGGACAGCATCGAGAAGGA
CTTCCACACCTGGTCTAAGGAGGTGAGGGGGAAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGCGTGGGAAAGAAGGTGA
AGATATCAACCTTGTATTTTTAGTTCTGTTGTCACGTCTCACTCACCCCT
CTCCTCTGTCCTTCCCCCTCAGGTCGCTCCCATCGACTGGGCCAAATACA
AGAGCAATATTGAGGCCCCGGGTTTCGTGGATTTTCTAAAGCAACGCTAC
GAGGGTATTGATTGGGCTCAGCTCAACGTGAAATTGAGCCAGGCAGAGGT
TGCGGCGGATAAGGCTGAGAAAGAGACGATGGTGCGTGACTTGATTGCAA
AGGGGGTCGCTATCGCCCCCCCTTCCTCCCTCCCCCCCTCCCTTCCTTCC
TTTCTTTCTTTCTTCCTTCTCTGTCGATTGCCATCCTTCACTCGTCTTCT
ATTCGTGAGTGGCCATCCAGACCGACAGCTCCCATACATACCCACCCTCT
TTCCCTCCCTCCCTCCCTCTTTCCCTCCCTCTCGACAGCTGAAGGAGGGC
AGCGCATTGGTGTCTGCCGCGGAGAAGATTATCGAGGAAACGAAGCATAA
GATGCACCTGGCCACTACCAAAAGGACGAACAAGGACTCTCTCGTGGAGG
ATGTGTGGGAGAAGAACCCCTCGATCAAGGAGGAGGTGGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGATTGGGAGGTGTTTCTTGTCTAT
GCCAATCCACGCACTCGCTCACTCCCTCCCTCCCTCCCTCCCTCCTTTCG
TCTAGGTGCTGGCCGAGATCGAGGATCACAAGTGGTTCAAGGACATTAAA
TAAACCTCGCCCTCCACCCCTCTTTCCCTCGGTCTCTGCCCCTCCCTCCC
TCCCTCTTTCGTCTTCGTGTGAGAGACGGAGAGGAGAAGGAGGGAAGGGG
GAGGGAAGGAGGGCATGTTCGTTTTGTGTCATGT
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Coding sequence (CDS) from alignment at scaffold_5:140470..141853-

>mRNA_2357 ID=mRNA_2357|Name=jgi.p|Nanoce1779_2|326893|organism=Nannochloropsis oceanica|type=CDS|length=2904bp|location=Sequence derived from alignment at scaffold_5:140470..141853- (Nannochloropsis oceanica)
GTGCTGGCCGAGATCGAGGATCACAAGTGGTTCAAGGACATTAAATAACT
GAAGGAGGGCAGCGCATTGGTGTCTGCCGCGGAGAAGATTATCGAGGAAA
CGAAGCATAAGATGCACCTGGCCACTACCAAAAGGACGAACAAGGACTCT
CTCGTGGAGGATGTGTGGGAGAAGAACCCCTCGATCAAGGAGGAGGTCGC
TCCCATCGACTGGGCCAAATACAAGAGCAATATTGAGGCCCCGGGTTTCG
TGGATTTTCTAAAGCAACGCTACGAGGGTATTGATTGGGCTCAGCTCAAC
GTGAAATTGAGCCAGGCAGAGGTTGCGGCGGATAAGGCTGAGAAAGAGAC
GATGATGACGACCAAGAGCAGTGCAGATGCTGCCAGGACTAGAGTACTGG
TTGGGAGCAGAAGGTTTAGGAGGAAAGGAAATGAAGAATGCATGAGTGGC
AATCCCTACGGATGTCTTAGTTGTGTATGTTGCATTCCCGTACTGACGCG
TGCCACATCCAACGACGGTCATCATGCCTTTCACTTTCATTCACATCATA
TATATAATGCCTTTCACTTCCGTTTACATCCTCCCTTCCCTTGTCATCCT
CTACATCCAAACAGGGACGCGCTTGGTCGCAAGGTAGAGGCGGACATTGA
GGCTAAGACGGATTTTAATTCGCTCAAGAACCAGTGGGACAGCATCGAGA
AGGACTTCCACACCTGGTCTAAGGAGGTGCTGGCCGAGATCGAGGATCAC
AAGTGGTTCAAGGACATTAAATAACTGAAGGAGGGCAGCGCATTGGTGTC
TGCCGCGGAGAAGATTATCGAGGAAACGAAGCATAAGATGCACCTGGCCA
CTACCAAAAGGACGAACAAGGACTCTCTCGTGGAGGATGTGTGGGAGAAG
AACCCCTCGATCAAGGAGGAGGTCGCTCCCATCGACTGGGCCAAATACAA
GAGCAATATTGAGGCCCCGGGTTTCGTGGATTTTCTAAAGCAACGCTACG
AGGGTATTGATTGGGCTCAGCTCAACGTGAAATTGAGCCAGGCAGAGGTT
GCGGCGGATAAGGCTGAGAAAGAGACGATGATGACGACCAAGAGCAGTGC
AGATGCTGCCAGGACTAGAGTACTGGTTGGGAGCAGAAGGTTTAGGAGGA
AAGGAAATGAAGAATGCATGAGTGGCAATCCCTACGGATGTCTTAGTTGT
GTATGTTGCATTCCCGTACTGACGCGTGCCACATCCAACGACGGTCATCA
TGCCTTTCACTTTCATTCACATCATATATATAATGCCTTTCACTTCCGTT
TACATCCTCCCTTCCCTTGTCATCCTCTACATCCAAACAGGGACGCGCTT
GGTCGCAAGGTAGAGGCGGACATTGAGGCTAAGACGGATTTTAATTCGCT
CAAGAACCAGTGGGACAGCATCGAGAAGGACTTCCACACCTGGTCTAAGG
AGGTGCTGGCCGAGATCGAGGATCACAAGTGGTTCAAGGACATTAAATAA
CTGAAGGAGGGCAGCGCATTGGTGTCTGCCGCGGAGAAGATTATCGAGGA
AACGAAGCATAAGATGCACCTGGCCACTACCAAAAGGACGAACAAGGACT
CTCTCGTGGAGGATGTGTGGGAGAAGAACCCCTCGATCAAGGAGGAGGTC
GCTCCCATCGACTGGGCCAAATACAAGAGCAATATTGAGGCCCCGGGTTT
CGTGGATTTTCTAAAGCAACGCTACGAGGGTATTGATTGGGCTCAGCTCA
ACGTGAAATTGAGCCAGGCAGAGGTTGCGGCGGATAAGGCTGAGAAAGAG
ACGATGATGACGACCAAGAGCAGTGCAGATGCTGCCAGGACTAGAGTACT
GGTTGGGAGCAGAAGGTTTAGGAGGAAAGGAAATGAAGAATGCATGAGTG
GCAATCCCTACGGATGTCTTAGTTGTGTATGTTGCATTCCCGTACTGACG
CGTGCCACATCCAACGACGGTCATCATGCCTTTCACTTTCATTCACATCA
TATATATAATGCCTTTCACTTCCGTTTACATCCTCCCTTCCCTTGTCATC
CTCTACATCCAAACAGGGACGCGCTTGGTCGCAAGGTAGAGGCGGACATT
GAGGCTAAGACGGATTTTAATTCGCTCAAGAACCAGTGGGACAGCATCGA
GAAGGACTTCCACACCTGGTCTAAGGAGGTGCTGGCCGAGATCGAGGATC
ACAAGTGGTTCAAGGACATTAAATAACTGAAGGAGGGCAGCGCATTGGTG
TCTGCCGCGGAGAAGATTATCGAGGAAACGAAGCATAAGATGCACCTGGC
CACTACCAAAAGGACGAACAAGGACTCTCTCGTGGAGGATGTGTGGGAGA
AGAACCCCTCGATCAAGGAGGAGGTCGCTCCCATCGACTGGGCCAAATAC
AAGAGCAATATTGAGGCCCCGGGTTTCGTGGATTTTCTAAAGCAACGCTA
CGAGGGTATTGATTGGGCTCAGCTCAACGTGAAATTGAGCCAGGCAGAGG
TTGCGGCGGATAAGGCTGAGAAAGAGACGATGATGACGACCAAGAGCAGT
GCAGATGCTGCCAGGACTAGAGTACTGGTTGGGAGCAGAAGGTTTAGGAG
GAAAGGAAATGAAGAATGCATGAGTGGCAATCCCTACGGATGTCTTAGTT
GTGTATGTTGCATTCCCGTACTGACGCGTGCCACATCCAACGACGGTCAT
CATGCCTTTCACTTTCATTCACATCATATATATAATGCCTTTCACTTCCG
TTTACATCCTCCCTTCCCTTGTCATCCTCTACATCCAAACAGGGACGCGC
TTGGTCGCAAGGTAGAGGCGGACATTGAGGCTAAGACGGATTTTAATTCG
CTCAAGAACCAGTGGGACAGCATCGAGAAGGACTTCCACACCTGGTCTAA
GGAG
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Synonyms
Publications