Properties
| Property Name | Value |
|---|
| TranscriptId | 326918 |
| Track | FilteredModels2 |
| ProteinId | 326832 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:137141..139183 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2356 ID=mRNA_2356|Name=jgi.p|Nanoce1779_2|326832|organism=Nannochloropsis oceanica|type=mRNA|length=1463bp
GTTCGCTGCTGCATGCACGCCGTTGTCTGTGCCCCCCTTCGCATCTCTCC
CATATGCTAACTCATCAGGACATCTATTATGATGCTGTTCTCTTCGCATG
CCGTCTCTGACCTTCTAATCCCGTTCTTTTCACAACAGAGAGGAGCAAGC
AACTTTCCATCTACGTAGAACGCTGCCTGTAAGAACCATGGCCGGCGGGG
GCGACGTCGTGGACGTGCCCAGCGGTAGCAGCATCAGAATAACTACTGCT
ATGCTTGACAATATCCTGCGCAATGGAGAAGAAAACCCGTCTGCTGTCGG
CCAGGAAGACGAGGGCGAACAGAAGCTCCAGCGGGTGCGCCTTTCGTACA
CTCCCACCTTTCAACGCTTTCGTGCCAAAACCCGAACATTCACGCAGCAA
TATTCCCACATGTACACGAATCGATTGCGACTGATGCGGCCGATGTTAGA
GGCGTCGGCGCAGGCGAAATGGGGAACAGGAGGGATGGCGCCGACGCTGT
GCAAGAAGGTGATCGATTTGGTGGATGGCGCGGGAACGGTTATGGTGGTG
GGTACACTGTTTAAGGACATGCCGTTGAGGCCGAGCCTGTTGGACGAATA
CCGGGATGAAGCGGCGTTGCAAGGTGCCTTGCAGCCCGCCGCGGGCCCCA
ACACCAACTACGTCTCTGGCGAGGATACCCTTGTCCTGGAAGATGAATCT
GGACGGGTGAATCTCGCCGGACCTTCCTTGGCCGTGGGGGAGTTCGTGAC
AGGCTTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGGGGGGTGTTAACAG
TGGCAGATGTGTGTGTCGCTGGGTTACCTTCCCAGGAAGAGGGGCCGGAG
GAGGGGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGGGCGGGAACCCGCG
GTATGTGTTGTTGGCGTCCGGGTTTAAGCTGAATGAGAAGTCCGACTTGC
TGCCCCTGCAGATGCTGATCGAGTATGTGCAAGGCCACGTGGGCTCAGAT
GCCCACAAGCGGGATGTCGTCTCCCGCATCGGCCGCCTCATTGTCGCGGG
CGACCTCCTCGCGCCCTTCGACGACTCCCTCCTCCGGGAGAAGCACATGA
CTGCCAAGCAACAGGAGGATTTCGCCCTCCCTTTCAAGCACCTCGACCTC
GTCCTCACGCAGGTCCGGCGCCAGGAGAGGAGGGAGGCAGTGAGGGAGGG
AGGGAGGGGAAAACGAGGATGTACGATGTTTTTTGTTTTGGCTTGTTCAC
ATTGCATGAAACACACATAGACCCGACCCTCCATCCCTCCCCCCTCCTCC
TCCCACCTCTTGATCCATTTAACCTCCCGCGCATTACCATCCTCCCAACC
TCCCTCCTCCTTCAGCTCGCCTCTGCAGTGCCTATGGACGTTATGCCAGG
CGCCGACGACCCCTCGAACAGCACGCTCCCGCAGCAGGTACGGTGTGACT
GTATCCTTCCTCC back to topprotein sequence of jgi.p|Nanoce1779_2|326832 >mRNA_2356-protein ID=mRNA_2356-protein|Name=jgi.p|Nanoce1779_2|326832|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MAGGGDVVDVPSGSSIRITTAMLDNILRNGEENPSAVGQEDEGEQKLQRV
RLSYTPTFQRFRAKTRTFTQQYSHMYTNRLRLMRPMLEASAQAKWGTGGM
APTLCKKVIDLVDGAGTVMVVGTLFKDMPLRPSLLDEYRDEAALQGALQP
AAGPNTNYVSGEDTLVLEDESGRVNLAGPSLAVGEFVTGLVVAVKGHVEG
GVLTVADVCVAGLPSQEEGPEEGAAVEVEGEGGGGNPRYVLLASGFKLNE
KSDLLPLQMLIEYVQGHVGSDAHKRDVVSRIGRLIVAGDLLAPFDDSLLR
EKHMTAKQQEDFALPFKHLDLVLTQVRRQERREAVREGGRGKRGCTMFFV
LACSHCMKHT* back to topmRNA from alignment at scaffold_5:137141..139183+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2356 ID=mRNA_2356|Name=jgi.p|Nanoce1779_2|326832|organism=Nannochloropsis oceanica|type=mRNA|length=2043bp|location=Sequence derived from alignment at scaffold_5:137141..139183+ (Nannochloropsis oceanica)
GTTCGCTGCTGCATGCACGCCGTTGTCTGTGCCCCCCTTCGCATCTCTCC
CATATGCTAACTCATCAGGACATCTATTATGATGCTGTTCTCTTCGCATG
CCGTCTCTGACCTTCTAATCCCGTTCTTTTCACAACAGAGAGGAGCAAGC
AACTTTCCATCTACGTAGAACGCTGCCTGTAAGAACCATGGCCGGCGGGG
GCGACGTCGTGGACGTGCCCAGCGGTAGCAGCATCAGAATAACTACTGCT
ATGCTTGACAATATCCTGCGCAATGGAGAAGAAAACCCGTCTGCTGTCGG
CCAGGAAGACGAGGGCGAACAGAAGCTCCAGCGGGTGCGCCTTTCGTACA
CTCCCACCTTTCAACGCTTTCGTGCCAAAACCCGAACATTCACGCAGCAA
TATTCCCACATGTACACGAATCGATTGCGACTGATGCGGCCGATGTTAGA
GGCGTCGGCGCAGGCGAAATGGGGAACAGGAGGGATGGCGCCGACGCTGT
GCAAGAAGGTGATCGATTTGGTGGATGGCGCGGGAACGGTTATGGTGGTG
GGTACACTGTTTAAGGACATGCCGTTGAGGCCGAGCCTGTTGGACGAATA
CCGGGATGAAGCGGCGTTGCAAGGTGAGTAGAGGGAAGGCTGGTAGGGAG
AGAGGGAGGAAGGGGAGAAGGAGCGTCATGAAGAGACAAGTGCGATACGT
GCTACTTTTTGTTATTGACTGAAAAAGCAATCCACGTGTACAAGCGGATC
AAAGCGAGTGTAATTGAAAATGAATAAGAAGACACCCCGTCACACCCGCC
TTCATTCCGTCACTCACACTTCGATACCAGCTACCTTAAACTCCTCCCCT
CCCACACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAT
CCCTCCCTCCCTCCCTCCCTCCCTGCAGGTGCCTTGCAGCCCGCCGCGGG
CCCCAACACCAACTACGTCTCTGGCGAGGATACCCTTGTCCTGGAAGATG
AATCTGGACGGGTGAATCTCGCCGGACCTTCCTTGGCCGTGGGGGAGTTC
GTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGGGGGGTGTT
AACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTCCCAGGAAGAGGGGC
CGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGGGCGGGAAC
CCGCGGTATGTGTTGTTGGCGTCCGGTGAGTGCTTGCAGAGGAGGGAGGG
AAGGGTGGCAGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGAGGAAGAGAG
GGAAGGAGGGAAGGGATTATGTTATGTTTCATTTCTGTGTTTTTCAACCA
TCTTTCCCGCATTTACTCGTTTATGCAGGGTTTAAGCTGAATGAGAAGTC
CGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCAAGGCCACGTGG
GCTCAGATGCCCACAAGCGGGATGTAAGTTAATGAACAAACCCTCCCTCT
CTCCCTCCCTCCCTCCTTTCCTCCCTAATTGTTGGTCTTTTCTTTCTTTT
CCTGAGTTTTCTCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGTCGT
CTCCCGCATCGGCCGCCTCATTGTCGCGGGCGACCTCCTCGCGCCCTTCG
ACGACTCCCTCCTCCGGGAGAAGCACATGACTGCCAAGCAACAGGAGGAT
TTCGCCCTCCCTTTCAAGCACCTCGACCTCGTCCTCACGCAGGTCCGGCG
CCAGGAGAGGAGGGAGGCAGTGAGGGAGGGAGGGAGGGGAAAACGAGGAT
GTACGATGTTTTTTGTTTTGGCTTGTTCACATTGCATGAAACACACATAG
ACCCGACCCTCCATCCCTCCCCCCTCCTCCTCCCACCTCTTGATCCATTT
AACCTCCCGCGCATTACCATCCTCCCAACCTCCCTCCTCCTTCAGCTCGC
CTCTGCAGTGCCTATGGACGTTATGCCAGGCGCCGACGACCCCTCGAACA
GCACGCTCCCGCAGCAGGTACGGTGTGACTGTATCCTTCCTCC back to topCoding sequence (CDS) from alignment at scaffold_5:137141..139183+ >mRNA_2356 ID=mRNA_2356|Name=jgi.p|Nanoce1779_2|326832|organism=Nannochloropsis oceanica|type=CDS|length=4332bp|location=Sequence derived from alignment at scaffold_5:137141..139183+ (Nannochloropsis oceanica)
ATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAGCATCAG
AATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAGAAAACC
CGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAGCGGGTG
CGCCTTTCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAACCCGAAC
ATTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGACTGATGC
GGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGAGGGATG
GCGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGCGGGAAC
GGTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGCCGAGCC
TGTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGCCTTGCAGCCC
GCCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCCTTGTCCT
GGAAGATGAATCTGGACGGGTGAATCTCGCCGGACCTTCCTTGGCCGTGG
GGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGG
GGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTCCCAGGA
AGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGG
GCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGGTTTAAGCTGAATGAG
AAGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCAAGGCCA
CGTGGGCTCAGATGCCCACAAGCGGGATGTCGTCTCCCGCATCGGCCGCC
TCATTGTCGCGGGCGACCTCCTCGCGCCCTTCGACGACTCCCTCCTCCGG
GAGAAGCACATGACTGCCAAGCAACAGGAGGATTTCGCCCTCCCTTTCAA
GCACCTCGACCTCGTCCTCACGCAGGTCCGGCGCCAGGAGAGGAGGGAGG
CAGTGAGGGAGGGAGGGAGGGGAAAACGAGGATGTACGATGTTTTTTGTT
TTGGCTTGTTCACATTGCATGAAACACACATAGATGGCCGGCGGGGGCGA
CGTCGTGGACGTGCCCAGCGGTAGCAGCATCAGAATAACTACTGCTATGC
TTGACAATATCCTGCGCAATGGAGAAGAAAACCCGTCTGCTGTCGGCCAG
GAAGACGAGGGCGAACAGAAGCTCCAGCGGGTGCGCCTTTCGTACACTCC
CACCTTTCAACGCTTTCGTGCCAAAACCCGAACATTCACGCAGCAATATT
CCCACATGTACACGAATCGATTGCGACTGATGCGGCCGATGTTAGAGGCG
TCGGCGCAGGCGAAATGGGGAACAGGAGGGATGGCGCCGACGCTGTGCAA
GAAGGTGATCGATTTGGTGGATGGCGCGGGAACGGTTATGGTGGTGGGTA
CACTGTTTAAGGACATGCCGTTGAGGCCGAGCCTGTTGGACGAATACCGG
GATGAAGCGGCGTTGCAAGGTGCCTTGCAGCCCGCCGCGGGCCCCAACAC
CAACTACGTCTCTGGCGAGGATACCCTTGTCCTGGAAGATGAATCTGGAC
GGGTGAATCTCGCCGGACCTTCCTTGGCCGTGGGGGAGTTCGTGACAGGC
TTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGGGGGGTGTTAACAGTGGC
AGATGTGTGTGTCGCTGGGTTACCTTCCCAGGAAGAGGGGCCGGAGGAGG
GGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGGGCGGGAACCCGCGGTAT
GTGTTGTTGGCGTCCGGGTTTAAGCTGAATGAGAAGTCCGACTTGCTGCC
CCTGCAGATGCTGATCGAGTATGTGCAAGGCCACGTGGGCTCAGATGCCC
ACAAGCGGGATGTCGTCTCCCGCATCGGCCGCCTCATTGTCGCGGGCGAC
CTCCTCGCGCCCTTCGACGACTCCCTCCTCCGGGAGAAGCACATGACTGC
CAAGCAACAGGAGGATTTCGCCCTCCCTTTCAAGCACCTCGACCTCGTCC
TCACGCAGGTCCGGCGCCAGGAGAGGAGGGAGGCAGTGAGGGAGGGAGGG
AGGGGAAAACGAGGATGTACGATGTTTTTTGTTTTGGCTTGTTCACATTG
CATGAAACACACATAGATGGCCGGCGGGGGCGACGTCGTGGACGTGCCCA
GCGGTAGCAGCATCAGAATAACTACTGCTATGCTTGACAATATCCTGCGC
AATGGAGAAGAAAACCCGTCTGCTGTCGGCCAGGAAGACGAGGGCGAACA
GAAGCTCCAGCGGGTGCGCCTTTCGTACACTCCCACCTTTCAACGCTTTC
GTGCCAAAACCCGAACATTCACGCAGCAATATTCCCACATGTACACGAAT
CGATTGCGACTGATGCGGCCGATGTTAGAGGCGTCGGCGCAGGCGAAATG
GGGAACAGGAGGGATGGCGCCGACGCTGTGCAAGAAGGTGATCGATTTGG
TGGATGGCGCGGGAACGGTTATGGTGGTGGGTACACTGTTTAAGGACATG
CCGTTGAGGCCGAGCCTGTTGGACGAATACCGGGATGAAGCGGCGTTGCA
AGGTGCCTTGCAGCCCGCCGCGGGCCCCAACACCAACTACGTCTCTGGCG
AGGATACCCTTGTCCTGGAAGATGAATCTGGACGGGTGAATCTCGCCGGA
CCTTCCTTGGCCGTGGGGGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAA
AGGTCATGTGGAAGGGGGGGTGTTAACAGTGGCAGATGTGTGTGTCGCTG
GGTTACCTTCCCAGGAAGAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTG
GAGGGAGAAGGAGGGGGCGGGAACCCGCGGTATGTGTTGTTGGCGTCCGG
GTTTAAGCTGAATGAGAAGTCCGACTTGCTGCCCCTGCAGATGCTGATCG
AGTATGTGCAAGGCCACGTGGGCTCAGATGCCCACAAGCGGGATGTCGTC
TCCCGCATCGGCCGCCTCATTGTCGCGGGCGACCTCCTCGCGCCCTTCGA
CGACTCCCTCCTCCGGGAGAAGCACATGACTGCCAAGCAACAGGAGGATT
TCGCCCTCCCTTTCAAGCACCTCGACCTCGTCCTCACGCAGGTCCGGCGC
CAGGAGAGGAGGGAGGCAGTGAGGGAGGGAGGGAGGGGAAAACGAGGATG
TACGATGTTTTTTGTTTTGGCTTGTTCACATTGCATGAAACACACATAGA
TGGCCGGCGGGGGCGACGTCGTGGACGTGCCCAGCGGTAGCAGCATCAGA
ATAACTACTGCTATGCTTGACAATATCCTGCGCAATGGAGAAGAAAACCC
GTCTGCTGTCGGCCAGGAAGACGAGGGCGAACAGAAGCTCCAGCGGGTGC
GCCTTTCGTACACTCCCACCTTTCAACGCTTTCGTGCCAAAACCCGAACA
TTCACGCAGCAATATTCCCACATGTACACGAATCGATTGCGACTGATGCG
GCCGATGTTAGAGGCGTCGGCGCAGGCGAAATGGGGAACAGGAGGGATGG
CGCCGACGCTGTGCAAGAAGGTGATCGATTTGGTGGATGGCGCGGGAACG
GTTATGGTGGTGGGTACACTGTTTAAGGACATGCCGTTGAGGCCGAGCCT
GTTGGACGAATACCGGGATGAAGCGGCGTTGCAAGGTGCCTTGCAGCCCG
CCGCGGGCCCCAACACCAACTACGTCTCTGGCGAGGATACCCTTGTCCTG
GAAGATGAATCTGGACGGGTGAATCTCGCCGGACCTTCCTTGGCCGTGGG
GGAGTTCGTGACAGGCTTGGTGGTGGCTGTAAAAGGTCATGTGGAAGGGG
GGGTGTTAACAGTGGCAGATGTGTGTGTCGCTGGGTTACCTTCCCAGGAA
GAGGGGCCGGAGGAGGGGGCAGCAGTGGAGGTGGAGGGAGAAGGAGGGGG
CGGGAACCCGCGGTATGTGTTGTTGGCGTCCGGGTTTAAGCTGAATGAGA
AGTCCGACTTGCTGCCCCTGCAGATGCTGATCGAGTATGTGCAAGGCCAC
GTGGGCTCAGATGCCCACAAGCGGGATGTCGTCTCCCGCATCGGCCGCCT
CATTGTCGCGGGCGACCTCCTCGCGCCCTTCGACGACTCCCTCCTCCGGG
AGAAGCACATGACTGCCAAGCAACAGGAGGATTTCGCCCTCCCTTTCAAG
CACCTCGACCTCGTCCTCACGCAGGTCCGGCGCCAGGAGAGGAGGGAGGC
AGTGAGGGAGGGAGGGAGGGGAAAACGAGGATGTACGATGTTTTTTGTTT
TGGCTTGTTCACATTGCATGAAACACACATAG back to top
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