jgi.p|Nanoce1779_2|326742, mRNA_2352 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|326742
Unique NamemRNA_2352
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_5:124111..125277 -

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Properties
Property NameValue
TranscriptId326828
TrackFilteredModels2
ProteinId326742
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:124111..125277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326742gene_2352Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326742mRNA_2352-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2352CDS_2352Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2352 ID=mRNA_2352|Name=jgi.p|Nanoce1779_2|326742|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
GCCTACCTTGAAAATATCTTTGCCTCCATCCCCGAGCTGGCCGTGGTGAT
GCACCAGAAGGGATTTATCCGCAGCTGTGATCTCGTCCGCACCGAGGAGG
TCCCCTTCCTCTCCCTCGGGTCCACAACTGTGGCAGCTGCTGCTGCTGCT
GCTGCTGGTGTTGCAGGCGCAACTGGGGCTGCAGGCATTTCGCGGGCAGC
TGTTGCTTCTCCCCCTGCGCCTGGTGCAAGGGGAAAGGGCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCGACCAAGAC
GCGTCCCAGCCCCTGTTCGATCCGAGCACCATCGATCTGAACGCCACCAC
TCTCCTCCGCTTCCTCAAAGCCAACTGCTGTGAAGACGGGAAGACCTACC
TCCTCCACCGTGAAGAGGGAGGACATAGCCTGGCTCTCTATGACATCACG
CCTTGTCGAGCCAGCGACAAAAACGATGGAAGTGGCTGCTGGCGATGCTT
TCCTATCGCTTTGCCATGCGGCTGTACCAGCAGGCGCATTTGTTGAGGAG
GAGGGAAGGAGGAAGGGAGGGAGGGGAAAGGAGAGGGCTGGAAAGGCGGC
ATAGGGCGTTGCTACAGACATGTTTTAAATTGCTTCAGGAGCTGGTGGGG
ACCACAGGGGGAGAAGGGGGGGGAGAGAGAAAAGGCGGGGGAGGGGGAGG
GCAGCACGCGAGTTTGTGTGCAGCAGTGCAGGAGCAGCTCGCGGACTCGT
ATCTTGTCCATGCCCCGTTGCCAGAGTCACCCTCCCTGCCTTCCTCCCCC
CCTTCCTCCCCCCCTCCCTCCTCGTCGAGTGCAGCAAAGGACCTGATGCA
GGCGGAGGAGCATTTGTCCACTGGCATCGGGCTCCTCCGTCCCTTGGTCA
TCAGGCACATGGAGGGAGGGAAGGAGGGAGGGAGGGAGGATGGTGGCCAG
G
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protein sequence of jgi.p|Nanoce1779_2|326742

>mRNA_2352-protein ID=mRNA_2352-protein|Name=jgi.p|Nanoce1779_2|326742|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MHQKGFIRSCDLVRTEEVPFLSLGSTTVAAAAAAAAGVAGATGAAGISRA
AVASPPAPGARGKGSSSSSSSSSSSSSSSSSDQDASQPLFDPSTIDLNAT
TLLRFLKANCCEDGKTYLLHREEGGHSLALYDITPCRASDKNDGSGCWRC
FPIALPCGCTSRRIC*
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mRNA from alignment at scaffold_5:124111..125277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2352 ID=mRNA_2352|Name=jgi.p|Nanoce1779_2|326742|organism=Nannochloropsis oceanica|type=mRNA|length=1167bp|location=Sequence derived from alignment at scaffold_5:124111..125277- (Nannochloropsis oceanica)
GCCTACCTTGAAAATATCTTTGCCTCCATCCCCGAGCTGGCCGTGGTGAT
GCACCAGAAGGGATTTATCCGCAGCTGTGATCTCGTCCGCACCGAGGAGG
TCCCCTTCCTCTCCCTCGGGTCCACAACTGTGGCAGCTGCTGCTGCTGCT
GCTGCTGGTGTTGCAGGCGCAACTGGGGCTGCAGGCATTTCGCGGGCAGC
TGTTGCTTCTCCCCCTGCGCCTGGTGCAAGGGGAAAGGGCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCGACCAAGAC
GCGTCCCAGCCCCTGTTCGATCCGAGGCAAGGTTTCCCTTCCTCCTACTC
ACTCTTCCATCCTTCCCTCTCTTCTTCCCTCCCTCTCCCTTCCTTCCCCA
AGCACCGTCGATCTCAACGCCACCACTAATTGCTGTCAAGACGGCAAGAC
CGACCTCCTCCACCGTGAAGAGGGAGGATACAATCTCCCCTCCACCTACT
GACTCCTTCCCTGCCTCCCTCCATTCCTCTCTCATCCCTCAGCACCATCG
ATCTGAACGCCACCACTCTCCTCCGCTTCCTCAAAGCCAACTGCTGTGAA
GACGGGAAGACCTACCTCCTCCACCGTGAAGAGGGAGGACATAGCCTGGC
TCTCTATGACATCACGCCTTGTCGAGCCAGCGACAAAAACGATGGAAGTG
GCTGCTGGCGATGCTTTCCTATCGCTTTGCCATGCGGCTGTACCAGCAGG
CGCATTTGTTGAGGAGGAGGGAAGGAGGAAGGGAGGGAGGGGAAAGGAGA
GGGCTGGAAAGGCGGCATAGGGCGTTGCTACAGACATGTTTTAAATTGCT
TCAGGAGCTGGTGGGGACCACAGGGGGAGAAGGGGGGGGAGAGAGAAAAG
GCGGGGGAGGGGGAGGGCAGCACGCGAGTTTGTGTGCAGCAGTGCAGGAG
CAGCTCGCGGACTCGTATCTTGTCCATGCCCCGTTGCCAGAGTCACCCTC
CCTGCCTTCCTCCCCCCCTTCCTCCCCCCCTCCCTCCTCGTCGAGTGCAG
CAAAGGACCTGATGCAGGCGGAGGAGCATTTGTCCACTGGCATCGGGCTC
CTCCGTCCCTTGGTCATCAGGCACATGGAGGGAGGGAAGGAGGGAGGGAG
GGAGGATGGTGGCCAGG
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Coding sequence (CDS) from alignment at scaffold_5:124111..125277-

>mRNA_2352 ID=mRNA_2352|Name=jgi.p|Nanoce1779_2|326742|organism=Nannochloropsis oceanica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_5:124111..125277- (Nannochloropsis oceanica)
CACCATCGATCTGAACGCCACCACTCTCCTCCGCTTCCTCAAAGCCAACT
GCTGTGAAGACGGGAAGACCTACCTCCTCCACCGTGAAGAGGGAGGACAT
AGCCTGGCTCTCTATGACATCACGCCTTGTCGAGCCAGCGACAAAAACGA
TGGAAGTGGCTGCTGGCGATGCTTTCCTATCGCTTTGCCATGCGGCTGTA
CCAGCAGGCGCATTTGTTGAATGCACCAGAAGGGATTTATCCGCAGCTGT
GATCTCGTCCGCACCGAGGAGGTCCCCTTCCTCTCCCTCGGGTCCACAAC
TGTGGCAGCTGCTGCTGCTGCTGCTGCTGGTGTTGCAGGCGCAACTGGGG
CTGCAGGCATTTCGCGGGCAGCTGTTGCTTCTCCCCCTGCGCCTGGTGCA
AGGGGAAAGGGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCTTCCGACCAAGACGCGTCCCAGCCCCTGTTCGATCCGAGCA
CCATCGATCTGAACGCCACCACTCTCCTCCGCTTCCTCAAAGCCAACTGC
TGTGAAGACGGGAAGACCTACCTCCTCCACCGTGAAGAGGGAGGACATAG
CCTGGCTCTCTATGACATCACGCCTTGTCGAGCCAGCGACAAAAACGATG
GAAGTGGCTGCTGGCGATGCTTTCCTATCGCTTTGCCATGCGGCTGTACC
AGCAGGCGCATTTGTTGAATGCACCAGAAGGGATTTATCCGCAGCTGTGA
TCTCGTCCGCACCGAGGAGGTCCCCTTCCTCTCCCTCGGGTCCACAACTG
TGGCAGCTGCTGCTGCTGCTGCTGCTGGTGTTGCAGGCGCAACTGGGGCT
GCAGGCATTTCGCGGGCAGCTGTTGCTTCTCCCCCTGCGCCTGGTGCAAG
GGGAAAGGGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCTTCCGACCAAGACGCGTCCCAGCCCCTGTTCGATCCGAG
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Synonyms
Publications