jgi.p|Nanoce1779_2|661471, mRNA_2351 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|661471
Unique NamemRNA_2351
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length884
Alignment locationscaffold_5:121300..122873 -

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Properties
Property NameValue
TranscriptId661557
TrackFilteredModels2
ProteinId661471
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:121300..122873 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661471gene_2351Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661471mRNA_2351-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2351CDS_2351Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2351 ID=mRNA_2351|Name=jgi.p|Nanoce1779_2|661471|organism=Nannochloropsis oceanica|type=mRNA|length=884bp
AAAACACACTTTGTGCCCTTCTTCTCCTTCTCCTCCTTCTTCCGCTGTCA
CAGACAGTCAGACAAACAACTCTCCCCCTTCCTCTTCCTCCTCCTCCCCT
TCCTCCTCTCCCTCCTGCACTTCCCTCCCCCTCCTATGCACGCAAGCCGC
CTTTGTCTGGTACCAGCACGCGCACTCCTGTTTCATCACCGCCCAGGACA
CCGACAACACTGTCCTCGTCTCTCTTAACCTCTTGGGGCTCTGCAAGCTC
GCCGCCTCTTCCTCCCTCCCTCCCTTACTCTCCCTCCTTTCCTCCTCCTC
GTCCTCATCCTCGACCTTGTCGGATATAGAGCGGAAGGAGTTGTGGTGGG
CTGAAGCCGTGCGGCTCGGGGAGGAAGCACATGCCCGACTTCAGGAGGGG
GGGATGGAGGGAGGGCAGGAAGGAGGAGGGTCGCACGAGGAGGAGGGAGG
GAAGGCGGGGGGGGAATAAGAGAAGGAAAAAGAAAAAGACAGCGATGAGG
GAAGAAGGAGGCGGGAAGGAGAAGGAGATGCCGGAGAAGGGAAGGGAGAA
GAAGGAGAAAGAGGGGCAGGCTGCGATGGAAGCCTTCTCCTATTTTTATC
AACAGCAGAGAGACGGGAAACGCGCGGAGGGAGGGAAGGAGGGAGGGAAG
ATGTTGTGGTTGATTGTCATGGACTTGGCAGGACTGTTGGAGGCGGAAAG
AGGAGTTGCGAGAGCGCTTGGGAAGATGTTTACTGGGGTGCTCAAGGAGG
GAGGGCGAGAGAGAGGGGGCAAGAAAGGGGAGGAGAAGAAGCTGAAGGAG
ATGTACCGAGTGGTGTTGCAAGCGAAGGAGAGGGGGCTGGGGAAAGAAAG
GATGGAGAAGTTGTGGGAGCTCTTTAGTTCTTAG
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protein sequence of jgi.p|Nanoce1779_2|661471

>mRNA_2351-protein ID=mRNA_2351-protein|Name=jgi.p|Nanoce1779_2|661471|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MPDFRRGGWREGRKEEGRTRRREGRRGGNKRRKKKKTAMREEGGGKEKEM
PEKGREKKEKEGQAAMEAFSYFYQQQRDGKRAEGGKEGGKMLWLIVMDLA
GLLEAERGVARALGKMFTGVLKEGGRERGGKKGEEKKLKEMYRVVLQAKE
RGLGKERMEKLWELFSS*
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mRNA from alignment at scaffold_5:121300..122873-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2351 ID=mRNA_2351|Name=jgi.p|Nanoce1779_2|661471|organism=Nannochloropsis oceanica|type=mRNA|length=1574bp|location=Sequence derived from alignment at scaffold_5:121300..122873- (Nannochloropsis oceanica)
AAAACACACTTTGTGCCCTTCTTCTCCTTCTCCTCCTTCTTCCGCTGTCA
CAGACAGTCAGACAAACAACTCTCCCCCTTCCTCTTCCTCCTCCTCCCCT
TCCTCCTCTCCCTCCTGCACTTCCCTCCCCCTCCTATGCACGCAAGCCGC
CTTTGTCTGGTACCAGCACGCGCACTCCTGTTTCATCACCGCCCAGGACA
CCGACAACACTGTCCTCGTCTCTCTTAACCTCTTGGGGCTCTGCAAGCTC
GCCGCCTCTTCCTCCCTCCCTCCCTTACTCTCCCTCCTTTCCTCCTCCTC
GTCCTCATCCTCGACCTTGTCGGATATAGAGCGGAAGGAGTTGTGGTGGG
CTGAAGCCGTGCGGCTCGGGGAGGAAGCACATGCCCGACTTCAGGAGGGG
GGGATGGAGGGAGGGCAGGAAGGAGGAGGGTCGCACGAGGAGGAGGGAGG
GAAGGCGGGGGGGGAATAAGAGAAGGAAAAAGAAAAAGACAGCGATGAGG
GAAGAAGGAGGCGGGAAGGAGAAGGAGATGCCGGAGAAGGGAAGGGAGAA
GAAGGAGAAAGAGGGGCAGGCTGCGATGGAAGGTGAGGAGGAAGAAGATG
AGGAGGAGGAGGAGGGGGGAAAAAGGTGGAAAGGAGAAGGAAGCGAAAGA
GGGTGAGAGGAGAACCACACAGCCCATACCCAAGAACGAGGACAAAGACG
AGACAGGGGCAGCACCAGCAGCCCTCACACACTCCTCCTCCCTACTCCAC
CCACTCGCTGGCTGACGTCATCACTGGCGAGCTCGCCTCGGTCTACCTCA
AGATCGGCATCGGCCGCCGTCACGCCCTCCTTCCCCTCCCTCCCCATCTC
CTCCTCCTCCTCGTCCCTCCTGGTCCCTCCCTCCCTCTAAATACTTCTCA
AGAGGCCTCCATCTTTCTTCCCCTCACGCACCTCCCTCACCCTATACTCT
CGCCTCCCCGGCAACCACGCTGACGCCCAGGCCGCCGCTACTCACTATCA
GCTTGGGGCTTTGTACACACGCACGTGGACCGGTCAACGGGAGAAAAAGG
TAGCAAGGGAAATGCTGGGTAAGGCACTCACCCATTACAACCAAGCCTTC
TCCTATTTTTATCAACAGCAGAGAGACGGGAAACGCGCGGAGGGAGGGAA
GGAGGGAGGGAAGATGTTGTGGTTGATTGTCATGGACTTGGCAGGACTGT
TGGAGGCGGTGGGAGTGATGGAGGAAGGAAGGAAGGGAGGGAATGGGGGG
GGGAGGAGTATGTCTGTGGCAAGCTTTGGAATGTTTGTTGAAACTCCGAT
GTGTTTTCACGGAGGACGAAGAAGGGAAGAAGGAATGTAGGGAGGATGGG
AGGGAGGAAGGGCGGTTTGTTTGGTGTCGGCCGAGGAAAGAGGAGTTGCG
AGAGCGCTTGGGAAGATGTTTACTGGGGTGCTCAAGGAGGGAGGGCGAGA
GAGAGGGGGCAAGAAAGGGGAGGAGAAGAAGCTGAAGGAGATGTACCGAG
TGGTGTTGCAAGCGAAGGAGAGGGGGCTGGGGAAAGAAAGGATGGAGAAG
TTGTGGGAGCTCTTTAGTTCTTAG
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Coding sequence (CDS) from alignment at scaffold_5:121300..122873-

>mRNA_2351 ID=mRNA_2351|Name=jgi.p|Nanoce1779_2|661471|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_5:121300..122873- (Nannochloropsis oceanica)
GAAAGAGGAGTTGCGAGAGCGCTTGGGAAGATGTTTACTGGGGTGCTCAA
GGAGGGAGGGCGAGAGAGAGGGGGCAAGAAAGGGGAGGAGAAGAAGCTGA
AGGAGATGTACCGAGTGGTGTTGCAAGCGAAGGAGAGGGGGCTGGGGAAA
GAAAGGATGGAGAAGTTGTGGGAGCTCTTTAGTTCTTAGCCTTCTCCTAT
TTTTATCAACAGCAGAGAGACGGGAAACGCGCGGAGGGAGGGAAGGAGGG
AGGGAAGATGTTGTGGTTGATTGTCATGGACTTGGCAGGACTGTTGGAGG
CGATGCCCGACTTCAGGAGGGGGGGATGGAGGGAGGGCAGGAAGGAGGAG
GGTCGCACGAGGAGGAGGGAGGGAAGGCGGGGGGGGAATAAGAGAAGGAA
AAAGAAAAAGACAGCGATGAGGGAAGAAGGAGGCGGGAAGGAGAAGGAGA
TGCCGGAGAAGGGAAGGGAGAAGAAGGAGAAAGAGGGGCAGGCTGCGATG
GAAGGAAAGAGGAGTTGCGAGAGCGCTTGGGAAGATGTTTACTGGGGTGC
TCAAGGAGGGAGGGCGAGAGAGAGGGGGCAAGAAAGGGGAGGAGAAGAAG
CTGAAGGAGATGTACCGAGTGGTGTTGCAAGCGAAGGAGAGGGGGCTGGG
GAAAGAAAGGATGGAGAAGTTGTGGGAGCTCTTTAGTTCTTAGCCTTCTC
CTATTTTTATCAACAGCAGAGAGACGGGAAACGCGCGGAGGGAGGGAAGG
AGGGAGGGAAGATGTTGTGGTTGATTGTCATGGACTTGGCAGGACTGTTG
GAGGCGATGCCCGACTTCAGGAGGGGGGGATGGAGGGAGGGCAGGAAGGA
GGAGGGTCGCACGAGGAGGAGGGAGGGAAGGCGGGGGGGGAATAAGAGAA
GGAAAAAGAAAAAGACAGCGATGAGGGAAGAAGGAGGCGGGAAGGAGAAG
GAGATGCCGGAGAAGGGAAGGGAGAAGAAGGAGAAAGAGGGGCAGGCTGC
GATGGAAGGAAAGAGGAGTTGCGAGAGCGCTTGGGAAGATGTTTACTGGG
GTGCTCAAGGAGGGAGGGCGAGAGAGAGGGGGCAAGAAAGGGGAGGAGAA
GAAGCTGAAGGAGATGTACCGAGTGGTGTTGCAAGCGAAGGAGAGGGGGC
TGGGGAAAGAAAGGATGGAGAAGTTGTGGGAGCTCTTTAGTTCTTAGCCT
TCTCCTATTTTTATCAACAGCAGAGAGACGGGAAACGCGCGGAGGGAGGG
AAGGAGGGAGGGAAGATGTTGTGGTTGATTGTCATGGACTTGGCAGGACT
GTTGGAGGCGATGCCCGACTTCAGGAGGGGGGGATGGAGGGAGGGCAGGA
AGGAGGAGGGTCGCACGAGGAGGAGGGAGGGAAGGCGGGGGGGGAATAAG
AGAAGGAAAAAGAAAAAGACAGCGATGAGGGAAGAAGGAGGCGGGAAGGA
GAAGGAGATGCCGGAGAAGGGAAGGGAGAAGAAGGAGAAAGAGGGGCAGG
CTGCGATGGAAG
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Synonyms
Publications