jgi.p|Nanoce1779_2|576627, mRNA_235 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576627
Unique Name	mRNA_235
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1616
Alignment location	scaffold_3:585286..586901 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576713
Track	FilteredModels2
ProteinId	576627

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:585286..586901 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576627	gene_235	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576627	mRNA_235-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_235	CDS_235	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:585286..586901+
coding sequence from alignment at scaffold_3:585286..586901+

mRNA sequence

>mRNA_235 ID=mRNA_235|Name=jgi.p|Nanoce1779_2|576627|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp
ATGGTAGTCGGTCGTGAGTACATGTGAAAGGGCAATGGCACTGCGAAGGG
CGATGCCAGTCATTCTTTTTTAGTTCCTTCCCGCCATTCTCTGCTTCAAA
TTATGCTCCGCCCGGCGTGGGCCAGACGCGCGCCTCCGAAATCCATCATC
TGCCTGCGCTTCCTTAGCAAGCAACACCAAAGCGCGGCTTTGCTTTGTGC
CCGAACTCCAACCCCTAACCCCATGATACCAAAATGCCTGTATCCTTTAT
CACTCACTCATTCACACTCTATGCCAACGTCCAGTGGTTGGAGTTGCCTC
GCGTGGAGAGCCTGTCTTCACCAAATCAACCCCGCCCCCTCACCCACTTC
TATCCCGCTCCTCGCATCATCGGCCACAACATTTTCTGTGGGCCGTGAAC
TGGCAACCACACCCCATTACGACGGGTCCCTCACCATCTTTCTCCCCTCT
TCCCGCTATCCCTTGGCGATACACCCAGGCGCGACTCAAGGACCACATCC
AGCACGTTCTCCTCGAAAACAAGAGGCGCATGTCGTCGGGCGTCCAACAT
ACAGCCTCTTCCGCCATGGCCTCGGCGGTGGCTGCCAAGGCCAAGACTGC
GGGCACCAGCTTGGAAGACGGGGATTTGACCATCAACACCAACCACGCCC
TCAACGTCACGGCCGACACGCAGGACCTTCGGAAAGTGATGGCCATGTTG
CAGGACAACGATAACGCGGACGAGGGCGCCACTGTCAAGCTGCCCACCTC
TCCTTTGCTGGACGATGCTACCATACAGCTTCCTTCCAGCCTTCTGCCCG
ATCCGATGAGGCACAAAGTGACCCTAGGCGAGAAGGAAGGATGCTCTCCT
GCGCCTGCCACCGAGGGGAGTGAGAATATGAAAAAGGGCAATGACACCAA
GAGCAGCAGTAGCAAAAGCAGCAGCGGCAAGCTAAGTTGCACAGGGGGAA
AGCGCACGAATGCAGACCGGGTAGCGGAGATGCGAGGGCCTTTACGTGCT
CTGAATGTGCACGCTGATCTTGCGCCTGAAGCCTCCGTGGAGCAGCTCAA
TCGCCGGCAGACGGTGGACGATGGCGCGTTGGAAGACTTTTTCAAGGACT
TCAAGGGCAAGGAAAACGGGAAAGACGGCGGCGAGAAGGAGAATCAACAA
TCTGCTGCCACTGTTACCACTGCTGTAGTAGCTCCCGAGACGATAGCGAC
AATGACGATGACCTCTGCTGGTGTGGGAACTCTCGCTTCTACTGATGGAC
TGGCGGAGCGACGTGAGACAGCCGACCCCGAATCGCTTCGGTACCTACTG
ACACTGCTCAAGTCTCCTGGTAGCACGGGGCCAGCATCGCGGGCTTCGCT
GTCCGTGTCACCCAGCATAGCAATTAAGAATATTCTGGGCACTGCGCTCG
CCGCCGCGGACGAGGAAGCAAAGGAAGCGGAGAGGGAAGGAGGTGATGGT
ACCACCGGCGCGACGACAACGGCTATAGCTACAGGCAGCAGCAGCAATAT
GACAGGACGGGATGAGATGGCGGTAGCCGACCTGACCGCGGATACTTCGC
AGGTCGAACGACTGATTGTAGACCTTGAGACTTCCCTATCAGAAGGGGTG
GGAGGGGTGACGGGAA

protein sequence of jgi.p|Nanoce1779_2|576627

>mRNA_235-protein ID=mRNA_235-protein|Name=jgi.p|Nanoce1779_2|576627|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MLRPAWARRAPPKSIICLRFLSKQHQSAALLCARTPTPNPMIPKCLYPLS
LTHSHSMPTSSGWSCLAWRACLHQINPAPSPTSIPLLASSATTFSVGREL
ATTPHYDGSLTIFLPSSRYPLAIHPGATQGPHPARSPRKQEAHVVGRPTY
SLFRHGLGGGCQGQDCGHQLGRRGFDHQHQPRPQRHGRHAGPSESDGHVA
GQR*

mRNA from alignment at scaffold_3:585286..586901+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_235 ID=mRNA_235|Name=jgi.p|Nanoce1779_2|576627|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp|location=Sequence derived from alignment at scaffold_3:585286..586901+ (Nannochloropsis oceanica)
ATGGTAGTCGGTCGTGAGTACATGTGAAAGGGCAATGGCACTGCGAAGGG
CGATGCCAGTCATTCTTTTTTAGTTCCTTCCCGCCATTCTCTGCTTCAAA
TTATGCTCCGCCCGGCGTGGGCCAGACGCGCGCCTCCGAAATCCATCATC
TGCCTGCGCTTCCTTAGCAAGCAACACCAAAGCGCGGCTTTGCTTTGTGC
CCGAACTCCAACCCCTAACCCCATGATACCAAAATGCCTGTATCCTTTAT
CACTCACTCATTCACACTCTATGCCAACGTCCAGTGGTTGGAGTTGCCTC
GCGTGGAGAGCCTGTCTTCACCAAATCAACCCCGCCCCCTCACCCACTTC
TATCCCGCTCCTCGCATCATCGGCCACAACATTTTCTGTGGGCCGTGAAC
TGGCAACCACACCCCATTACGACGGGTCCCTCACCATCTTTCTCCCCTCT
TCCCGCTATCCCTTGGCGATACACCCAGGCGCGACTCAAGGACCACATCC
AGCACGTTCTCCTCGAAAACAAGAGGCGCATGTCGTCGGGCGTCCAACAT
ACAGCCTCTTCCGCCATGGCCTCGGCGGTGGCTGCCAAGGCCAAGACTGC
GGGCACCAGCTTGGAAGACGGGGATTTGACCATCAACACCAACCACGCCC
TCAACGTCACGGCCGACACGCAGGACCTTCGGAAAGTGATGGCCATGTTG
CAGGACAACGATAACGCGGACGAGGGCGCCACTGTCAAGCTGCCCACCTC
TCCTTTGCTGGACGATGCTACCATACAGCTTCCTTCCAGCCTTCTGCCCG
ATCCGATGAGGCACAAAGTGACCCTAGGCGAGAAGGAAGGATGCTCTCCT
GCGCCTGCCACCGAGGGGAGTGAGAATATGAAAAAGGGCAATGACACCAA
GAGCAGCAGTAGCAAAAGCAGCAGCGGCAAGCTAAGTTGCACAGGGGGAA
AGCGCACGAATGCAGACCGGGTAGCGGAGATGCGAGGGCCTTTACGTGCT
CTGAATGTGCACGCTGATCTTGCGCCTGAAGCCTCCGTGGAGCAGCTCAA
TCGCCGGCAGACGGTGGACGATGGCGCGTTGGAAGACTTTTTCAAGGACT
TCAAGGGCAAGGAAAACGGGAAAGACGGCGGCGAGAAGGAGAATCAACAA
TCTGCTGCCACTGTTACCACTGCTGTAGTAGCTCCCGAGACGATAGCGAC
AATGACGATGACCTCTGCTGGTGTGGGAACTCTCGCTTCTACTGATGGAC
TGGCGGAGCGACGTGAGACAGCCGACCCCGAATCGCTTCGGTACCTACTG
ACACTGCTCAAGTCTCCTGGTAGCACGGGGCCAGCATCGCGGGCTTCGCT
GTCCGTGTCACCCAGCATAGCAATTAAGAATATTCTGGGCACTGCGCTCG
CCGCCGCGGACGAGGAAGCAAAGGAAGCGGAGAGGGAAGGAGGTGATGGT
ACCACCGGCGCGACGACAACGGCTATAGCTACAGGCAGCAGCAGCAATAT
GACAGGACGGGATGAGATGGCGGTAGCCGACCTGACCGCGGATACTTCGC
AGGTCGAACGACTGATTGTAGACCTTGAGACTTCCCTATCAGAAGGGGTG
GGAGGGGTGACGGGAA

Coding sequence (CDS) from alignment at scaffold_3:585286..586901+

>mRNA_235 ID=mRNA_235|Name=jgi.p|Nanoce1779_2|576627|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at scaffold_3:585286..586901+ (Nannochloropsis oceanica)
ATGCTCCGCCCGGCGTGGGCCAGACGCGCGCCTCCGAAATCCATCATCTG
CCTGCGCTTCCTTAGCAAGCAACACCAAAGCGCGGCTTTGCTTTGTGCCC
GAACTCCAACCCCTAACCCCATGATACCAAAATGCCTGTATCCTTTATCA
CTCACTCATTCACACTCTATGCCAACGTCCAGTGGTTGGAGTTGCCTCGC
GTGGAGAGCCTGTCTTCACCAAATCAACCCCGCCCCCTCACCCACTTCTA
TCCCGCTCCTCGCATCATCGGCCACAACATTTTCTGTGGGCCGTGAACTG
GCAACCACACCCCATTACGACGGGTCCCTCACCATCTTTCTCCCCTCTTC
CCGCTATCCCTTGGCGATACACCCAGGCGCGACTCAAGGACCACATCCAG
CACGTTCTCCTCGAAAACAAGAGGCGCATGTCGTCGGGCGTCCAACATAC
AGCCTCTTCCGCCATGGCCTCGGCGGTGGCTGCCAAGGCCAAGACTGCGG
GCACCAGCTTGGAAGACGGGGATTTGACCATCAACACCAACCACGCCCTC
AACGTCACGGCCGACACGCAGGACCTTCGGAAAGTGATGGCCATGTTGCA
GGACAACGATAA

Synonyms

Publications