jgi.p|Nanoce1779_2|580048, mRNA_2349 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580048
Unique NamemRNA_2349
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length450
Alignment locationscaffold_5:116509..117887 -

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Properties
Property NameValue
TranscriptId580134
TrackFilteredModels2
ProteinId580048
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:116509..117887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580048gene_2349Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580048mRNA_2349-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2349CDS_2349Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2349 ID=mRNA_2349|Name=jgi.p|Nanoce1779_2|580048|organism=Nannochloropsis oceanica|type=mRNA|length=450bp
AAGTTTTTCCGCTTCTTCTTTTTGCTGTCCTCGCTGCTGCTGCCGGTGCT
GCTTGTGGTGGCTGTGTGGCGTGGGAGGGAGGGAGGTCGGGAGGGAGGTA
CGACGGGAGGGCGGGATGGCGGAAGGTGCTGTGAAGCCGTTGAGGAGGCT
GAAGAGCACGTCTTGGTCTTGAGGGGCAACCGACGAAGTGCGTCGCTGCT
GCTGCTGCTGCTGCTGCTGATACTTGCCGGTACCAGAGGCATTTGCTCCT
CCTGGAGGAGGAGGAGGACGAGGATGGAGACGAGGCCGAGGAATCGAGGG
AGGCAGGTCGGGTCGTGCCAGTCATCATCCTTCGTCTTCTTCTTCTGCCG
GAATGAGTCAGAATCAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGAAGAGGGTGACGACGATGAGGAGGTATCGCCCTTCTGA
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protein sequence of jgi.p|Nanoce1779_2|580048

>mRNA_2349-protein ID=mRNA_2349-protein|Name=jgi.p|Nanoce1779_2|580048|organism=Nannochloropsis oceanica|type=polypeptide|length=150bp
KFFRFFFLLSSLLLPVLLVVAVWRGREGGREGGTTGGRDGGRCCEAVEEA
EEHVLVLRGNRRSASLLLLLLLLILAGTRGICSSWRRRRTRMETRPRNRG
RQVGSCQSSSFVFFFCRNESESDEEEEEEEEEEEEEEEEGDDDEEVSPF*
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mRNA from alignment at scaffold_5:116509..117887-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2349 ID=mRNA_2349|Name=jgi.p|Nanoce1779_2|580048|organism=Nannochloropsis oceanica|type=mRNA|length=1379bp|location=Sequence derived from alignment at scaffold_5:116509..117887- (Nannochloropsis oceanica)
AAGTTTTTCCGCTTCTTCTTTTTGCTGTCCTCGCTGCTGCTGCCGGTGCT
GCTTGTGGTGGCTGTGTGGCGTGGGAGGGAGGGAGGTCGGGAGGGAGGTA
CGACGGGAGGGCGGGATGGCGGAAGGTGCTGTGAAGCCGTTGAGGAGGCT
GAAGAGCACGTCTTGGTCTTGAGGGGCAACCGACGAAGTGCGTCGCTGCT
GCTGCTGCTGCTGCTGCTGATACTTGCCGGTACCAGAGGCATTTGCTCCT
CCTGGGTTGGTCGCTGCCACCTTGCTGCCCGTGCTGCTACTGCTCTTCAC
CGCAGTTCTCCCCTTCCTCTTCCTCCCCCTCATCTTCAAAAGAGGAGGAG
GAGGACGAGGATGGAGACGAGGCCGAGGAATCGAGGGAGGCAGGTCGGGT
CGTGCCAGTCATCATCCTTCGTCTTCTTCTTCTGCCGGTGCGCAGTGACC
ACAGCCACCGGGGCCACTCCTCTTTTTTCCCTTCCTCTCCCTCTCCCTCC
TCGTCAACTACTGCTGCTGCTACTGCTGCTACTGCTGCTAAACTGCTGCT
CCTAGGCGCTTGTCGTTTCCACCGCCTCCCTTGGTATCTTCCTTTTCCGT
CAAAATAGGTTTTCTCCCCCTCCTCCTCCTCTTCCCCTTCACTGCTCTCC
ATCGCTGTTTGCCGACATCTTTTCCTGGACTCTTCCTTCATTCTTCTTCA
AACCTGTATAGATGGATTGTAGGCGATGCAGCCACACAGCGCAGGAGTCA
GCAGTAGCAGCATCAGCAGGGGTAGAGACAAAGGATTTTAGGGCCGCACG
GAGGCCGCAACGGCCTTTTCCTCCTTTCCAAGTCCCTCCCCTTTCCTCCT
TCTTTTCACCAATTATTATCATCAATCATCATAATCGCTCCAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAAGGAGAGGAGGAGGAGGAGGAGGA
GGAGGAGCCTTCTTTCTTCTCCTCTCACTCTCACTCTCACTGCCAGAGTA
CTCCTCCTCTCCCTCCTCCTCCTTCTTTTTCTCCTCCTGCTCCTCCACCT
TCTTCTCTGCCGCCGCCGCTTTCAGAGCAACCGATCTAGCAGGCGACAGT
GCTGTTGCTGCTGCTACTTTTTCTCCTCCTGCTGCTACCACCCCATTCTG
TGCACCTCCTCCTACTCCTTTGGTCGTCGGGGTCAGAGGAGCAACCTCCC
TCTTCTGAGCCGCTTCTTCTACTGCTGGCTTCGACGTTGGCATCTCCTCT
TCGTCACTACTACTGTCCTCTCCTCCAAGGAATGAGTCAGAATCAGATGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAAGAGGGTG
ACGACGATGAGGAGGTATCGCCCTTCTGA
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Coding sequence (CDS) from alignment at scaffold_5:116509..117887-

>mRNA_2349 ID=mRNA_2349|Name=jgi.p|Nanoce1779_2|580048|organism=Nannochloropsis oceanica|type=CDS|length=1350bp|location=Sequence derived from alignment at scaffold_5:116509..117887- (Nannochloropsis oceanica)
GAATGAGTCAGAATCAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGAAGAGGGTGACGACGATGAGGAGGTATCGCCCTTCTGA
AGGAGGAGGAGGACGAGGATGGAGACGAGGCCGAGGAATCGAGGGAGGCA
GGTCGGGTCGTGCCAGTCATCATCCTTCGTCTTCTTCTTCTGCCGAAGTT
TTTCCGCTTCTTCTTTTTGCTGTCCTCGCTGCTGCTGCCGGTGCTGCTTG
TGGTGGCTGTGTGGCGTGGGAGGGAGGGAGGTCGGGAGGGAGGTACGACG
GGAGGGCGGGATGGCGGAAGGTGCTGTGAAGCCGTTGAGGAGGCTGAAGA
GCACGTCTTGGTCTTGAGGGGCAACCGACGAAGTGCGTCGCTGCTGCTGC
TGCTGCTGCTGCTGATACTTGCCGGTACCAGAGGCATTTGCTCCTCCTGG
GAATGAGTCAGAATCAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGAAGAGGGTGACGACGATGAGGAGGTATCGCCCTTCTGA
AGGAGGAGGAGGACGAGGATGGAGACGAGGCCGAGGAATCGAGGGAGGCA
GGTCGGGTCGTGCCAGTCATCATCCTTCGTCTTCTTCTTCTGCCGAAGTT
TTTCCGCTTCTTCTTTTTGCTGTCCTCGCTGCTGCTGCCGGTGCTGCTTG
TGGTGGCTGTGTGGCGTGGGAGGGAGGGAGGTCGGGAGGGAGGTACGACG
GGAGGGCGGGATGGCGGAAGGTGCTGTGAAGCCGTTGAGGAGGCTGAAGA
GCACGTCTTGGTCTTGAGGGGCAACCGACGAAGTGCGTCGCTGCTGCTGC
TGCTGCTGCTGCTGATACTTGCCGGTACCAGAGGCATTTGCTCCTCCTGG
GAATGAGTCAGAATCAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGAGGAAGAGGGTGACGACGATGAGGAGGTATCGCCCTTCTGA
AGGAGGAGGAGGACGAGGATGGAGACGAGGCCGAGGAATCGAGGGAGGCA
GGTCGGGTCGTGCCAGTCATCATCCTTCGTCTTCTTCTTCTGCCGAAGTT
TTTCCGCTTCTTCTTTTTGCTGTCCTCGCTGCTGCTGCCGGTGCTGCTTG
TGGTGGCTGTGTGGCGTGGGAGGGAGGGAGGTCGGGAGGGAGGTACGACG
GGAGGGCGGGATGGCGGAAGGTGCTGTGAAGCCGTTGAGGAGGCTGAAGA
GCACGTCTTGGTCTTGAGGGGCAACCGACGAAGTGCGTCGCTGCTGCTGC
TGCTGCTGCTGCTGATACTTGCCGGTACCAGAGGCATTTGCTCCTCCTGG
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Synonyms
Publications