jgi.p|Nanoce1779_2|628427, mRNA_2348 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628427
Unique Name	mRNA_2348
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1827
Alignment location	scaffold_5:114359..116185 -

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Properties


Property Name	Value
TranscriptId	628513
Track	FilteredModels2
ProteinId	628427

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:114359..116185 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628427	gene_2348	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628427	mRNA_2348-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2348	CDS_2348	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:114359..116185-
coding sequence from alignment at scaffold_5:114359..116185-

mRNA sequence

>mRNA_2348 ID=mRNA_2348|Name=jgi.p|Nanoce1779_2|628427|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp
TGCTGCTGCTGCCGCCGCCATTGCTGCTGCTGTCACTGCTGCTGCTGCTG
CTGTTACTGCTGCTGCTGTCACTGCTGCTGCTGCCGCTTCCACTGCTACT
ATCACTACAGCCATCCTCATGCTCCTCCACCGCCGCAATAGCCACCTTCC
CTTTCTTATTCTGCTGCTTCTTGTCGCCCGCCACCAACCCCTCCTCCCTC
CATTCCTCCTCCTTCACACTCTCTAATAGGGCAACCAGAGCCTCTTTCGC
ATGCCCAACTCTCGATGTCCCACACTTCCTCCTCACCGTCTCCAGCCCTA
GGGCAATCCTCCCTTCCTCCCTCCCTCCCTCCTTCAGAGCCTTCAAGGCC
GCATCTATGTGCCTCATGAATCGATTCGCTTTCCTTGGCTCCAGGGTAGT
GGCGCCGTGTAAGTACCGAAGCCAGGCAGGCATCCCTAGCCCCGCCTTCT
CAGGAGGATCAATGAGGTGGTCTGATGAACGAACCGCCTGGTGTGGTCGT
GACAACAACAGAGGGGGGGAGGGGAGGCTTGGTTGGGCTGCTCTTTTCTG
CTGCCACTGCTACTGGGGTCGTGGTGGTGGTTGTGGGAGTAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCTTCTTGGACTTGGTCGCTGCTTC
CTTTCCGCCTCCTTCTCTATCTCCATTCTTCTCATTTTGCCCGTTCATCG
AAACAGCAGGGGCCGCCATGGCGGGGAGGGAGAGCGGGAGGGAGGGCGAG
GCAGCCGCTGCTGGAGAGGAGGGGGGGTTGGCGTGCAAGGGGCGGCCGTC
TGTTCTCATCATGACGACCCCTGTATCCGCCAGCTCGTCCCCCAACAAGG
GCTTTGGGGTTCGAGAGGAGCCGCCAGCAGTGGGGTTTGCCGAGTTGCAG
GGTGCGGGGAGTGATTTGACGGAGAGAGGAGAAAAGGGCGGCAGAGGACG
GAGAGGGGGAGGAAGAGGAGGAGGCAGGCATGGAGGTGAAGGCGTTCCAA
GTTCCGATGCTGGTGACGCACAGACGTTTTCTTCCATCCCTTGCTGTTGC
TGCTGCTGGTATTGCCATTTCCCCTGTGGCGAGGAGAAGGGGGAGGAATA
GCACCAGCACAAGCAGCTGCTACAGCTGCGGGCATCACAAGATGGTCTTC
CCGCCAGGCTTGGTAGCAGCCTAGGGCCGTCTCGCTCAATTGCTTGACCG
TAGCCAAGCGGGGCATCATTAACCCGAGCTTGTGCTGGCCATCAACGACA
AGGAAAAGCTGTATGAAAGGGGAGGCGGACGGATGGGGGGCGCGAGGAAT
GGTGTTGGGTAAATGCTCCTTCTTCCGCTTTTTGCTGGCGGGGGCGGCGG
GGGACGAAATGGGGGGGGAAGACCCATTGCTGGCACCATGTGCGGTAGGA
GGTACAGGCGCTGACGCACCCGGGGCTGAGGTTGAGGAATTAATTGGAGT
AGAAGTAGAGGTGGACGGTGCCTTGGATTTGCGGGGCTTGCGCTTTTTCT
TTGCGCTGGTCTCGGAGTGCGCAGGGGTAAAGGAGGAGGCCGAGTCCGGC
AGGAAGGGGAAGAAATCATCGAACATCATCGGCTCGAGAGAGCGTCAGGC
CTGTGCATATGTCATGGTGTAAGTGCGAAGGTGTGGGTGTGGGTGTGGGT
GAGGTGGATTGAGCTTGAAATGGGCAACGAAGAACAGGGGCAAGAAGAGG
AGGCAGGTCTCGCTTGGGAGCCACTCGTCCACAGCGCACACTTAAGCAGC
GATTGAACTTGAGACACCGCGTGCTGCATCCTATGATTTTGCAGCATAAG
TTACTGTACGGGAGGGGTGGTTAGCGT

protein sequence of jgi.p|Nanoce1779_2|628427

>mRNA_2348-protein ID=mRNA_2348-protein|Name=jgi.p|Nanoce1779_2|628427|organism=Nannochloropsis oceanica|type=polypeptide|length=209bp
MNEPPGVVVTTTEGGRGGLVGLLFSAATATGVVVVVVGVAAAAAAAAAAA
AFLDLVAASFPPPSLSPFFSFCPFIETAGAAMAGRESGREGEAAAAGEEG
GLACKGRPSVLIMTTPVSASSSPNKGFGVREEPPAVGFAELQGAGSDLTE
RGEKGGRGRRGGGRGGGRHGGEGVPSSDAGDAQTFSSIPCCCCCWYCHFP
CGEEKGEE*

mRNA from alignment at scaffold_5:114359..116185-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2348 ID=mRNA_2348|Name=jgi.p|Nanoce1779_2|628427|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at scaffold_5:114359..116185- (Nannochloropsis oceanica)
TGCTGCTGCTGCCGCCGCCATTGCTGCTGCTGTCACTGCTGCTGCTGCTG
CTGTTACTGCTGCTGCTGTCACTGCTGCTGCTGCCGCTTCCACTGCTACT
ATCACTACAGCCATCCTCATGCTCCTCCACCGCCGCAATAGCCACCTTCC
CTTTCTTATTCTGCTGCTTCTTGTCGCCCGCCACCAACCCCTCCTCCCTC
CATTCCTCCTCCTTCACACTCTCTAATAGGGCAACCAGAGCCTCTTTCGC
ATGCCCAACTCTCGATGTCCCACACTTCCTCCTCACCGTCTCCAGCCCTA
GGGCAATCCTCCCTTCCTCCCTCCCTCCCTCCTTCAGAGCCTTCAAGGCC
GCATCTATGTGCCTCATGAATCGATTCGCTTTCCTTGGCTCCAGGGTAGT
GGCGCCGTGTAAGTACCGAAGCCAGGCAGGCATCCCTAGCCCCGCCTTCT
CAGGAGGATCAATGAGGTGGTCTGATGAACGAACCGCCTGGTGTGGTCGT
GACAACAACAGAGGGGGGGAGGGGAGGCTTGGTTGGGCTGCTCTTTTCTG
CTGCCACTGCTACTGGGGTCGTGGTGGTGGTTGTGGGAGTAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCCTTCTTGGACTTGGTCGCTGCTTC
CTTTCCGCCTCCTTCTCTATCTCCATTCTTCTCATTTTGCCCGTTCATCG
AAACAGCAGGGGCCGCCATGGCGGGGAGGGAGAGCGGGAGGGAGGGCGAG
GCAGCCGCTGCTGGAGAGGAGGGGGGGTTGGCGTGCAAGGGGCGGCCGTC
TGTTCTCATCATGACGACCCCTGTATCCGCCAGCTCGTCCCCCAACAAGG
GCTTTGGGGTTCGAGAGGAGCCGCCAGCAGTGGGGTTTGCCGAGTTGCAG
GGTGCGGGGAGTGATTTGACGGAGAGAGGAGAAAAGGGCGGCAGAGGACG
GAGAGGGGGAGGAAGAGGAGGAGGCAGGCATGGAGGTGAAGGCGTTCCAA
GTTCCGATGCTGGTGACGCACAGACGTTTTCTTCCATCCCTTGCTGTTGC
TGCTGCTGGTATTGCCATTTCCCCTGTGGCGAGGAGAAGGGGGAGGAATA
GCACCAGCACAAGCAGCTGCTACAGCTGCGGGCATCACAAGATGGTCTTC
CCGCCAGGCTTGGTAGCAGCCTAGGGCCGTCTCGCTCAATTGCTTGACCG
TAGCCAAGCGGGGCATCATTAACCCGAGCTTGTGCTGGCCATCAACGACA
AGGAAAAGCTGTATGAAAGGGGAGGCGGACGGATGGGGGGCGCGAGGAAT
GGTGTTGGGTAAATGCTCCTTCTTCCGCTTTTTGCTGGCGGGGGCGGCGG
GGGACGAAATGGGGGGGGAAGACCCATTGCTGGCACCATGTGCGGTAGGA
GGTACAGGCGCTGACGCACCCGGGGCTGAGGTTGAGGAATTAATTGGAGT
AGAAGTAGAGGTGGACGGTGCCTTGGATTTGCGGGGCTTGCGCTTTTTCT
TTGCGCTGGTCTCGGAGTGCGCAGGGGTAAAGGAGGAGGCCGAGTCCGGC
AGGAAGGGGAAGAAATCATCGAACATCATCGGCTCGAGAGAGCGTCAGGC
CTGTGCATATGTCATGGTGTAAGTGCGAAGGTGTGGGTGTGGGTGTGGGT
GAGGTGGATTGAGCTTGAAATGGGCAACGAAGAACAGGGGCAAGAAGAGG
AGGCAGGTCTCGCTTGGGAGCCACTCGTCCACAGCGCACACTTAAGCAGC
GATTGAACTTGAGACACCGCGTGCTGCATCCTATGATTTTGCAGCATAAG
TTACTGTACGGGAGGGGTGGTTAGCGT

Coding sequence (CDS) from alignment at scaffold_5:114359..116185-

>mRNA_2348 ID=mRNA_2348|Name=jgi.p|Nanoce1779_2|628427|organism=Nannochloropsis oceanica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_5:114359..116185- (Nannochloropsis oceanica)
ATGAACGAACCGCCTGGTGTGGTCGTGACAACAACAGAGGGGGGGAGGGG
AGGCTTGGTTGGGCTGCTCTTTTCTGCTGCCACTGCTACTGGGGTCGTGG
TGGTGGTTGTGGGAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCCTTCTTGGACTTGGTCGCTGCTTCCTTTCCGCCTCCTTCTCTATCTCC
ATTCTTCTCATTTTGCCCGTTCATCGAAACAGCAGGGGCCGCCATGGCGG
GGAGGGAGAGCGGGAGGGAGGGCGAGGCAGCCGCTGCTGGAGAGGAGGGG
GGGTTGGCGTGCAAGGGGCGGCCGTCTGTTCTCATCATGACGACCCCTGT
ATCCGCCAGCTCGTCCCCCAACAAGGGCTTTGGGGTTCGAGAGGAGCCGC
CAGCAGTGGGGTTTGCCGAGTTGCAGGGTGCGGGGAGTGATTTGACGGAG
AGAGGAGAAAAGGGCGGCAGAGGACGGAGAGGGGGAGGAAGAGGAGGAGG
CAGGCATGGAGGTGAAGGCGTTCCAAGTTCCGATGCTGGTGACGCACAGA
CGTTTTCTTCCATCCCTTGCTGTTGCTGCTGCTGGTATTGCCATTTCCCC
TGTGGCGAGGAGAAGGGGGAGGAATAG

Synonyms

Publications