jgi.p|Nanoce1779_2|668975, mRNA_2344 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668975
Unique NamemRNA_2344
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1150
Alignment locationscaffold_5:107463..108612 -

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Properties
Property NameValue
TranscriptId669061
TrackFilteredModels2
ProteinId668975
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:107463..108612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668975gene_2344Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2344CDS_2344Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668975mRNA_2344-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2344 ID=mRNA_2344|Name=jgi.p|Nanoce1779_2|668975|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp
CCATGTTCCGTGGATGACCTCCCGCCTCTCCCCTTGGTCGTGTGATGCCC
TTGCCGTGTGGAGTCAACAAACGCGAATACGAAGACATAACTATCAAATG
TATCGTCTCTGTCTGGACACTGCTGGCCATCGTACCCACGTCCACGGCCC
AAGTGAAACAAAAGCGTTGTCACTCTTACCACCCCCGCTTACTACACCTA
CAGACGGACGCGCTCTTTGACATCACCGACAAAAGGTACAGGTCATGACC
CGCAGTGAGCGCATCGCCAGCATCCGATCATCTTCCGCAACCTCTTCTTC
CCCCCCCGCCGCCAAAACTTCCATTGGCAACACCAACACCCTCAAGGCCG
TGCCCTTTCTCACGGGCAGTTCAGTCGACTCCCTGGAAAAAATGATGAAT
CAGTACTCCAAGGCAGAACTGAAGCGCCTCCTCCGGTCAGCGTGGGGTGA
AATTACCATTCGTCGAAACGAAGTACTAGCTTTGCGCTCTGTTGTGGTCA
GCTTGCGGCAAAACATTGCGTATTACCACGCCAACGCCCAATCCAGAGAC
AGCTCTAGCACTAGCAGCGGCACTCTAATTGACACCCATGTTGGCAATGA
CTACAGTACACCCATTTTACATGGCTGCAGCCCTCAGAACGCCGATGAGG
AGCCGTCGTACTTTTCCATATCCACCGACGCCTCTCGCACTGTGAGCCCG
ACCCCGGCGATAGGGTATGTACTCCCTGTAAGCGATAATGGTCTGGTGAC
TCCCACGACGACGTCGAAACAAGAGCAGCAGTACGAACAACAGCAGTCAG
GGCAACAGCAGCACGAGCAGCAGCAGCACGAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGAAAGTGCCCTCGGTCAC
GGCAACGGCGCAAGCGAGGATGGTGGGAAATATGGGCACGGGGGACGGTC
ATGCCATACAGGGGGAGGATGAGGTGGACCCTCTGTTGGAGGCGTTGTTG
GTAGAACAGGGAGGGGTTAAGGGTATGGAAGGGGAGGGAGGATTGATGGC
TGAGTTTGTGATGCATTGGGGTGCAAGTGAGGGGGAGGATGAGAAGCAGG
AGGGGAATGCGGTAGGGATGACGGACTTGTCGGTGGTGGTAAACGAGTGA
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protein sequence of jgi.p|Nanoce1779_2|668975

>mRNA_2344-protein ID=mRNA_2344-protein|Name=jgi.p|Nanoce1779_2|668975|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MTRSERIASIRSSSATSSSPPAAKTSIGNTNTLKAVPFLTGSSVDSLEKM
MNQYSKAELKRLLRSAWGEITIRRNEVLALRSVVVSLRQNIAYYHANAQS
RDSSSTSSGTLIDTHVGNDYSTPILHGCSPQNADEEPSYFSISTDASRTV
SPTPAIGYVLPVSDNGLVTPTTTSKQEQQYEQQQSGQQQHEQQQHEQQQQ
QQQQQQQQQQQQGKVPSVTATAQARMVGNMGTGDGHAIQGEDEVDPLLEA
LLVEQGGVKGMEGEGGLMAEFVMHWGASEGEDEKQEGNAVGMTDLSVVVN
E*
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mRNA from alignment at scaffold_5:107463..108612-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2344 ID=mRNA_2344|Name=jgi.p|Nanoce1779_2|668975|organism=Nannochloropsis oceanica|type=mRNA|length=1150bp|location=Sequence derived from alignment at scaffold_5:107463..108612- (Nannochloropsis oceanica)
CCATGTTCCGTGGATGACCTCCCGCCTCTCCCCTTGGTCGTGTGATGCCC
TTGCCGTGTGGAGTCAACAAACGCGAATACGAAGACATAACTATCAAATG
TATCGTCTCTGTCTGGACACTGCTGGCCATCGTACCCACGTCCACGGCCC
AAGTGAAACAAAAGCGTTGTCACTCTTACCACCCCCGCTTACTACACCTA
CAGACGGACGCGCTCTTTGACATCACCGACAAAAGGTACAGGTCATGACC
CGCAGTGAGCGCATCGCCAGCATCCGATCATCTTCCGCAACCTCTTCTTC
CCCCCCCGCCGCCAAAACTTCCATTGGCAACACCAACACCCTCAAGGCCG
TGCCCTTTCTCACGGGCAGTTCAGTCGACTCCCTGGAAAAAATGATGAAT
CAGTACTCCAAGGCAGAACTGAAGCGCCTCCTCCGGTCAGCGTGGGGTGA
AATTACCATTCGTCGAAACGAAGTACTAGCTTTGCGCTCTGTTGTGGTCA
GCTTGCGGCAAAACATTGCGTATTACCACGCCAACGCCCAATCCAGAGAC
AGCTCTAGCACTAGCAGCGGCACTCTAATTGACACCCATGTTGGCAATGA
CTACAGTACACCCATTTTACATGGCTGCAGCCCTCAGAACGCCGATGAGG
AGCCGTCGTACTTTTCCATATCCACCGACGCCTCTCGCACTGTGAGCCCG
ACCCCGGCGATAGGGTATGTACTCCCTGTAAGCGATAATGGTCTGGTGAC
TCCCACGACGACGTCGAAACAAGAGCAGCAGTACGAACAACAGCAGTCAG
GGCAACAGCAGCACGAGCAGCAGCAGCACGAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGAAAGTGCCCTCGGTCAC
GGCAACGGCGCAAGCGAGGATGGTGGGAAATATGGGCACGGGGGACGGTC
ATGCCATACAGGGGGAGGATGAGGTGGACCCTCTGTTGGAGGCGTTGTTG
GTAGAACAGGGAGGGGTTAAGGGTATGGAAGGGGAGGGAGGATTGATGGC
TGAGTTTGTGATGCATTGGGGTGCAAGTGAGGGGGAGGATGAGAAGCAGG
AGGGGAATGCGGTAGGGATGACGGACTTGTCGGTGGTGGTAAACGAGTGA
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Coding sequence (CDS) from alignment at scaffold_5:107463..108612-

>mRNA_2344 ID=mRNA_2344|Name=jgi.p|Nanoce1779_2|668975|organism=Nannochloropsis oceanica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_5:107463..108612- (Nannochloropsis oceanica)
ATGACCCGCAGTGAGCGCATCGCCAGCATCCGATCATCTTCCGCAACCTC
TTCTTCCCCCCCCGCCGCCAAAACTTCCATTGGCAACACCAACACCCTCA
AGGCCGTGCCCTTTCTCACGGGCAGTTCAGTCGACTCCCTGGAAAAAATG
ATGAATCAGTACTCCAAGGCAGAACTGAAGCGCCTCCTCCGGTCAGCGTG
GGGTGAAATTACCATTCGTCGAAACGAAGTACTAGCTTTGCGCTCTGTTG
TGGTCAGCTTGCGGCAAAACATTGCGTATTACCACGCCAACGCCCAATCC
AGAGACAGCTCTAGCACTAGCAGCGGCACTCTAATTGACACCCATGTTGG
CAATGACTACAGTACACCCATTTTACATGGCTGCAGCCCTCAGAACGCCG
ATGAGGAGCCGTCGTACTTTTCCATATCCACCGACGCCTCTCGCACTGTG
AGCCCGACCCCGGCGATAGGGTATGTACTCCCTGTAAGCGATAATGGTCT
GGTGACTCCCACGACGACGTCGAAACAAGAGCAGCAGTACGAACAACAGC
AGTCAGGGCAACAGCAGCACGAGCAGCAGCAGCACGAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGGGAAAGTGCCCTC
GGTCACGGCAACGGCGCAAGCGAGGATGGTGGGAAATATGGGCACGGGGG
ACGGTCATGCCATACAGGGGGAGGATGAGGTGGACCCTCTGTTGGAGGCG
TTGTTGGTAGAACAGGGAGGGGTTAAGGGTATGGAAGGGGAGGGAGGATT
GATGGCTGAGTTTGTGATGCATTGGGGTGCAAGTGAGGGGGAGGATGAGA
AGCAGGAGGGGAATGCGGTAGGGATGACGGACTTGTCGGTGGTGGTAAAC
GAGTGA
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Synonyms
Publications