Properties
| Property Name | Value |
|---|
| TranscriptId | 580123 |
| Track | FilteredModels2 |
| ProteinId | 580037 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:105682..107233 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2343 ID=mRNA_2343|Name=jgi.p|Nanoce1779_2|580037|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp
ACAGCACACAGGCCTCCTCCAAGCTCCCGCTACCCTTCGAACACAAATTC
TGACCCTCGTAATGGCTTCCAAGTTGGCACCTCGACGTGTTCCTCGGCCG
ACCAGCTTGCTTTTCCAGATCCTCCTTTTCCTCCTCTCCATCGTCTATAC
CTATGCCCAACAGTCCAAGAGCGACAGACTCTCCCCATCCTCAGAAGTGT
TGGGGGGAATCATCCTTACACTGGGCCTCATTCTTGCCTTTGGTGGGAAG
AACGTCATGTCTCTTTATTGTGCTGCAGCCGGGTTTTTGTTTGGATTTAT
CATCTCGTACGTAGTTCTTGAGAGGATTCAAGTCGATCATGACCTGGGGC
CGAACAAGGACCTCATCGAGCTTGTCAGTGCCTTGCTCATGGGCATCATT
GGAGCGGCCCTAGGGTTATGTTTATCGCGATTCGCTGCATTTCTTGTGGC
GGTATTGTTTGGCCTGGTGGTGACTGTAGCAATCCTCACCATTCCTGGCA
CTCGTTCCCGCCTGCCGTCTTGGGCTTTGGCTCTCATTGTCATCGCCATT
TCTATCGTCATATATGCCCTTCTCGAGACGTGGCTCGTCGTGCTTTTCAC
GGCTTTGGTCGGTTCCTTTGCGTTTGCCTGTGGGTTGGACGGGATCTTGA
AGACGGGGCTCAACGAGGAGCTATCGATGGTGTTGACTCAGAGCACGGAG
TCTGCCCCGATTCCATTTGAGGGGACGGAGGACATGCTCCCTATTCTATA
CGCTTTTTGCGCTTGTTTTGTGCTGGGGAGCATCACGCAGGTGTGTGTAA
GCAGGAGGGCGGGAAACGGGAGTGATGGGGAGGAGGCGAGAAAGATGAGG
GCAAGCAGGAGGGACCGGGCTTTTGAGGAGGAGGAGGAGAAGATGGAACG
TGGCGCAGTGGCACATGTGTACTAAGAGAAAGAGATGTGGAGAAGAGAGG
GAGGGAAAGAGGGAGGAGTTGGAGGTATGGGTTTGCATACATAAATATAC
ATTGATGTGACAGCAGACGTAGCAGCAGCGGCAGGAGCAGGAGCAGCAGT
AGGAGCAAGAGCAGGAGCAGCAGTAGGAGCAAGAGCAGCAGTAGCAGCAG
CATAATGATGAAACTTGGAGCGACTGAACCGCACCACGCCCAGCAGCGGG
AGCAGCACAGGGGCAGGAACAACTCAGAGGGGACGTAGAATGTATTACGG
GCATAAGCCACCGCCTTATTGGAACACAAGGGAGAGAAGCCGCCTCAGCT
CTGTGTTATGAAAGAGGAAAAGGGAGCAGTATGTGAATGTGAGAACACGT
GGAATAAAAGCGTTGATAAAGGAATGGAAAGGTTCACGTGCTGACTGTAG
CGGTCGACTAGCCTCATCTACATGGGCAAGGGAAAATGAAATTTGAACAG
CGCAGGTTTGTTCGATATTGTTTGTTCGAGAAGGGAAAAGAACGAGGGAG
GTTTCATAGCGTATCACACACGCGTAAAGAGAGAAAAAGAGAAAAGAAGA
ACGACCTCCATGGTAAGCCCCCCAAATGAAGGCCAGAAACATTATCTGTC
TA back to topprotein sequence of jgi.p|Nanoce1779_2|580037 >mRNA_2343-protein ID=mRNA_2343-protein|Name=jgi.p|Nanoce1779_2|580037|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MASKLAPRRVPRPTSLLFQILLFLLSIVYTYAQQSKSDRLSPSSEVLGGI
ILTLGLILAFGGKNVMSLYCAAAGFLFGFIISYVVLERIQVDHDLGPNKD
LIELVSALLMGIIGAALGLCLSRFAAFLVAVLFGLVVTVAILTIPGTRSR
LPSWALALIVIAISIVIYALLETWLVVLFTALVGSFAFACGLDGILKTGL
NEELSMVLTQSTESAPIPFEGTEDMLPILYAFCACFVLGSITQVCVSRRA
GNGSDGEEARKMRASRRDRAFEEEEEKMERGAVAHVY* back to topmRNA from alignment at scaffold_5:105682..107233+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2343 ID=mRNA_2343|Name=jgi.p|Nanoce1779_2|580037|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp|location=Sequence derived from alignment at scaffold_5:105682..107233+ (Nannochloropsis oceanica)
ACAGCACACAGGCCTCCTCCAAGCTCCCGCTACCCTTCGAACACAAATTC
TGACCCTCGTAATGGCTTCCAAGTTGGCACCTCGACGTGTTCCTCGGCCG
ACCAGCTTGCTTTTCCAGATCCTCCTTTTCCTCCTCTCCATCGTCTATAC
CTATGCCCAACAGTCCAAGAGCGACAGACTCTCCCCATCCTCAGAAGTGT
TGGGGGGAATCATCCTTACACTGGGCCTCATTCTTGCCTTTGGTGGGAAG
AACGTCATGTCTCTTTATTGTGCTGCAGCCGGGTTTTTGTTTGGATTTAT
CATCTCGTACGTAGTTCTTGAGAGGATTCAAGTCGATCATGACCTGGGGC
CGAACAAGGACCTCATCGAGCTTGTCAGTGCCTTGCTCATGGGCATCATT
GGAGCGGCCCTAGGGTTATGTTTATCGCGATTCGCTGCATTTCTTGTGGC
GGTATTGTTTGGCCTGGTGGTGACTGTAGCAATCCTCACCATTCCTGGCA
CTCGTTCCCGCCTGCCGTCTTGGGCTTTGGCTCTCATTGTCATCGCCATT
TCTATCGTCATATATGCCCTTCTCGAGACGTGGCTCGTCGTGCTTTTCAC
GGCTTTGGTCGGTTCCTTTGCGTTTGCCTGTGGGTTGGACGGGATCTTGA
AGACGGGGCTCAACGAGGAGCTATCGATGGTGTTGACTCAGAGCACGGAG
TCTGCCCCGATTCCATTTGAGGGGACGGAGGACATGCTCCCTATTCTATA
CGCTTTTTGCGCTTGTTTTGTGCTGGGGAGCATCACGCAGGTGTGTGTAA
GCAGGAGGGCGGGAAACGGGAGTGATGGGGAGGAGGCGAGAAAGATGAGG
GCAAGCAGGAGGGACCGGGCTTTTGAGGAGGAGGAGGAGAAGATGGAACG
TGGCGCAGTGGCACATGTGTACTAAGAGAAAGAGATGTGGAGAAGAGAGG
GAGGGAAAGAGGGAGGAGTTGGAGGTATGGGTTTGCATACATAAATATAC
ATTGATGTGACAGCAGACGTAGCAGCAGCGGCAGGAGCAGGAGCAGCAGT
AGGAGCAAGAGCAGGAGCAGCAGTAGGAGCAAGAGCAGCAGTAGCAGCAG
CATAATGATGAAACTTGGAGCGACTGAACCGCACCACGCCCAGCAGCGGG
AGCAGCACAGGGGCAGGAACAACTCAGAGGGGACGTAGAATGTATTACGG
GCATAAGCCACCGCCTTATTGGAACACAAGGGAGAGAAGCCGCCTCAGCT
CTGTGTTATGAAAGAGGAAAAGGGAGCAGTATGTGAATGTGAGAACACGT
GGAATAAAAGCGTTGATAAAGGAATGGAAAGGTTCACGTGCTGACTGTAG
CGGTCGACTAGCCTCATCTACATGGGCAAGGGAAAATGAAATTTGAACAG
CGCAGGTTTGTTCGATATTGTTTGTTCGAGAAGGGAAAAGAACGAGGGAG
GTTTCATAGCGTATCACACACGCGTAAAGAGAGAAAAAGAGAAAAGAAGA
ACGACCTCCATGGTAAGCCCCCCAAATGAAGGCCAGAAACATTATCTGTC
TA back to topCoding sequence (CDS) from alignment at scaffold_5:105682..107233+ >mRNA_2343 ID=mRNA_2343|Name=jgi.p|Nanoce1779_2|580037|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at scaffold_5:105682..107233+ (Nannochloropsis oceanica)
ATGGCTTCCAAGTTGGCACCTCGACGTGTTCCTCGGCCGACCAGCTTGCT
TTTCCAGATCCTCCTTTTCCTCCTCTCCATCGTCTATACCTATGCCCAAC
AGTCCAAGAGCGACAGACTCTCCCCATCCTCAGAAGTGTTGGGGGGAATC
ATCCTTACACTGGGCCTCATTCTTGCCTTTGGTGGGAAGAACGTCATGTC
TCTTTATTGTGCTGCAGCCGGGTTTTTGTTTGGATTTATCATCTCGTACG
TAGTTCTTGAGAGGATTCAAGTCGATCATGACCTGGGGCCGAACAAGGAC
CTCATCGAGCTTGTCAGTGCCTTGCTCATGGGCATCATTGGAGCGGCCCT
AGGGTTATGTTTATCGCGATTCGCTGCATTTCTTGTGGCGGTATTGTTTG
GCCTGGTGGTGACTGTAGCAATCCTCACCATTCCTGGCACTCGTTCCCGC
CTGCCGTCTTGGGCTTTGGCTCTCATTGTCATCGCCATTTCTATCGTCAT
ATATGCCCTTCTCGAGACGTGGCTCGTCGTGCTTTTCACGGCTTTGGTCG
GTTCCTTTGCGTTTGCCTGTGGGTTGGACGGGATCTTGAAGACGGGGCTC
AACGAGGAGCTATCGATGGTGTTGACTCAGAGCACGGAGTCTGCCCCGAT
TCCATTTGAGGGGACGGAGGACATGCTCCCTATTCTATACGCTTTTTGCG
CTTGTTTTGTGCTGGGGAGCATCACGCAGGTGTGTGTAAGCAGGAGGGCG
GGAAACGGGAGTGATGGGGAGGAGGCGAGAAAGATGAGGGCAAGCAGGAG
GGACCGGGCTTTTGAGGAGGAGGAGGAGAAGATGGAACGTGGCGCAGTGG
CACATGTGTACTAA back to top
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