jgi.p|Nanoce1779_2|326394, mRNA_2342 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|326394
Unique NamemRNA_2342
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1200
Alignment locationscaffold_5:103384..104583 +

Link to JBrowse

Properties
Property NameValue
TranscriptId326480
TrackFilteredModels2
ProteinId326394
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:103384..104583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326394gene_2342Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326394mRNA_2342-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2342CDS_2342Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2342 ID=mRNA_2342|Name=jgi.p|Nanoce1779_2|326394|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp
CTCAATAAAAAACATGGACAATTCTGTTCTCTACTTAGGGCTAATTTCAT
TACACATAGCCTCTCCATGCTTTATTGCCACAGGAAGAAAGAAACTCACT
TCGTGCAACCTCCCCGTCCTCCCCCCCACCTCCACCGCTGCAGAACAGAA
CTTCGTCCCGGACGCAGATAAAAATCAAGGCTGATTAAAGCACCACGCCA
ATATGGACAAAACATTTGCCGCTACGCAACACCTGCAGCAGCCACAGGCC
TCGCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGGGTGATAGCCTGAT
GGCGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGTCCGGCCACGACTC
CGGCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCCCTTGCGTGCGACG
GATGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGGGAAAGGCGGCTGG
GGCGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGAGGGCACAAGACGG
CGGAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGAAGCTTTGGGTGTG
GCCCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGGCGAAGACCCAGGA
ACCCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAATTTCACAAGAAGA
AAGAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGCACAGGTAGTGGAC
AAGGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGATTGGAGAAGTGGC
GGCGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAGAGGGTGAATAAAA
TGGGACATCGTGTGGCAGAGCACGCTGAGGCGATGGGAAATAAAGTCCAG
TCAATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTGCCGTGGATCGAGC
CAAGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCAGAGCACATGGGGG
ATGCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCATGGCTGGCGAAGTG
CAGCACCGGTCGAAGGAAGAGTAAAGACGACAAGGCGGACCCGTACCGAT
AGGGTTCAGTGAACTTGAAGGAGCGAGTGGCATCAAGATACGTGGACGGA
CGAAGAAAGGAGGAGGAGAACGAGTCAAGGCGTTGGCACGTGACTTGGCT
ACCTTTACCTTGGACATGTCGCGAGCGTGTGTGGTATGAGGGGAGGAGGA
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protein sequence of jgi.p|Nanoce1779_2|326394

>mRNA_2342-protein ID=mRNA_2342-protein|Name=jgi.p|Nanoce1779_2|326394|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MDKTFAATQHLQQPQASQKSQGRKEGGLGDSLMAEEEFVVPPEGRPATTP
AGEKGREGGTDPLRATDEALTGAAGWVKGKAAGAWQTVKAGTVSGGHKTA
EGLGTVKDKMGEALGVAREKVASATHRVAKTQEPKSPVRERAAQEFHKKK
EEGKETTQAMKAQVVDKAEGATDVTKVKIGEVAARGSEAGAQAQERVNKM
GHRVAEHAEAMGNKVQSMAQATKQQGQSAVDRAKETAQEAAGTTAEHMGD
AAGKVSGFMEGMAGEVQHRSKEE*
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mRNA from alignment at scaffold_5:103384..104583+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2342 ID=mRNA_2342|Name=jgi.p|Nanoce1779_2|326394|organism=Nannochloropsis oceanica|type=mRNA|length=1200bp|location=Sequence derived from alignment at scaffold_5:103384..104583+ (Nannochloropsis oceanica)
CTCAATAAAAAACATGGACAATTCTGTTCTCTACTTAGGGCTAATTTCAT
TACACATAGCCTCTCCATGCTTTATTGCCACAGGAAGAAAGAAACTCACT
TCGTGCAACCTCCCCGTCCTCCCCCCCACCTCCACCGCTGCAGAACAGAA
CTTCGTCCCGGACGCAGATAAAAATCAAGGCTGATTAAAGCACCACGCCA
ATATGGACAAAACATTTGCCGCTACGCAACACCTGCAGCAGCCACAGGCC
TCGCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGGGTGATAGCCTGAT
GGCGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGTCCGGCCACGACTC
CGGCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCCCTTGCGTGCGACG
GATGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGGGAAAGGCGGCTGG
GGCGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGAGGGCACAAGACGG
CGGAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGAAGCTTTGGGTGTG
GCCCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGGCGAAGACCCAGGA
ACCCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAATTTCACAAGAAGA
AAGAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGCACAGGTAGTGGAC
AAGGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGATTGGAGAAGTGGC
GGCGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAGAGGGTGAATAAAA
TGGGACATCGTGTGGCAGAGCACGCTGAGGCGATGGGAAATAAAGTCCAG
TCAATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTGCCGTGGATCGAGC
CAAGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCAGAGCACATGGGGG
ATGCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCATGGCTGGCGAAGTG
CAGCACCGGTCGAAGGAAGAGTAAAGACGACAAGGCGGACCCGTACCGAT
AGGGTTCAGTGAACTTGAAGGAGCGAGTGGCATCAAGATACGTGGACGGA
CGAAGAAAGGAGGAGGAGAACGAGTCAAGGCGTTGGCACGTGACTTGGCT
ACCTTTACCTTGGACATGTCGCGAGCGTGTGTGGTATGAGGGGAGGAGGA
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Coding sequence (CDS) from alignment at scaffold_5:103384..104583+

>mRNA_2342 ID=mRNA_2342|Name=jgi.p|Nanoce1779_2|326394|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_5:103384..104583+ (Nannochloropsis oceanica)
ATGGACAAAACATTTGCCGCTACGCAACACCTGCAGCAGCCACAGGCCTC
GCAGAAGTCCCAAGGCCGTAAGGAGGGAGGCTTGGGTGATAGCCTGATGG
CGGAAGAAGAGTTTGTCGTGCCCCCCGAAGGTCGTCCGGCCACGACTCCG
GCAGGGGAAAAAGGACGAGAAGGAGGGACGGATCCCTTGCGTGCGACGGA
TGAGGCCTTGACGGGTGCGGCAGGGTGGGTCAAGGGAAAGGCGGCTGGGG
CGTGGCAGACGGTAAAAGCCGGTACTGTCTCGGGAGGGCACAAGACGGCG
GAGGGCTTGGGCACTGTCAAGGACAAGATGGGCGAAGCTTTGGGTGTGGC
CCGTGAGAAGGTAGCCAGCGCGACACATAGGGTGGCGAAGACCCAGGAAC
CCAAGTCGCCTGTCCGAGAGCGGGCCGCGCAAGAATTTCACAAGAAGAAA
GAGGAGGGCAAAGAGACCACCCAGGCGATGAAGGCACAGGTAGTGGACAA
GGCCGAGGGTGCCACCGATGTGACCAAGGTTAAGATTGGAGAAGTGGCGG
CGCGGGGCAGCGAAGCTGGCGCGCAAGCGCAGGAGAGGGTGAATAAAATG
GGACATCGTGTGGCAGAGCACGCTGAGGCGATGGGAAATAAAGTCCAGTC
AATGGCTCAAGCGACCAAGCAACAGGGCCAGTCTGCCGTGGATCGAGCCA
AGGAAACCGCCCAAGAGGCAGCCGGCACCACGGCAGAGCACATGGGGGAT
GCGGCGGGAAAGGTCAGCGGCTTTATGGAGGGCATGGCTGGCGAAGTGCA
GCACCGGTCGAAGGAAGAGTAA
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Synonyms
Publications