jgi.p|Nanoce1779_2|326500, mRNA_2341 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|326500
Unique NamemRNA_2341
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1298
Alignment locationscaffold_5:102096..103393 -

Link to JBrowse

Properties
Property NameValue
TranscriptId326586
TrackFilteredModels2
ProteinId326500
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:102096..103393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326500gene_2341Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|326500mRNA_2341-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2341CDS_2341Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2341 ID=mRNA_2341|Name=jgi.p|Nanoce1779_2|326500|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp
TTTTATTGAGGAGTGCAATCCCTTGCCGTCCATCTTTCCTATGTCCCATG
CGGAACGAAAAAGAAGAAGAAGCAACACGTACTTGAAGTCAAATGCTTCA
CCCCATACCAAACTACTTACAGATCAAAAAACCTGTCAAAGTCGCCAGTA
AAACTCGGACCAAATAAGGGGTGAATATGCAACAAATTATTGTTGAAAGG
CTCCCCCTCGTATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTT
CTAGAGGGATGTACGGCAACGGCAACTACTTACAGGCAAAGAGCACAAGA
CAAGCAAAGCAACAACAAGATGATGATCTCCGCGTTTGATCTTGCGGCTG
GTTGGTCCATGGCACGCACTAGTGCAGCGCTTGCCATTGTCTCCCTTTTG
TGCCTCTCTTCTTCTTCCATGGCCGTGGGCCGCCGTCTCCGCACCCGGAT
ATGCACCACTTTGCAGCGACTTCGCCGTAGACAAAGGCGTTCATGGCAAG
ACATAAAGCAGGACAAGGAAACTGCTCTATTTCGCTGTGACACCTTCCAT
GCGGACGTCATTCTAGTCTTGGGTGGAGACCGCCATCGGGAGCTCACAGC
CGTGCGTCTTTTCCATGAGAAAGCAATCGTCTCTGCCCTCGCCCTTCCCC
ACCACCAACATAAAAGTCGCATCCACATCGACTACACCCGCACACCCCTA
ATCCTCTCCTCGGGCACCATCGGTCCAGATGACCTTCCTTCCTACCTCCC
ACCCTCGCTTTGCATCACCTTTGATCGACGCGCCATTTGCACTCTGACCA
ACTTTACGTCCCTATCTTCGTCTTTTCAAGCCCAGGGGGTACGGCGGGTC
CTAGTTTTGACTTCGTCTTCCCATCTCCCCCGTGCGCTGGCTGTAGGCAG
CGTGGTGCTAGGGGCAGGAGCGATAGATGTGCGTGGGCTCGGTATCGAAG
GAAGTGGTGGAGGAGGACAGGGAGAGGAAGGGTGGTTGAGGAGGGGAAGG
GATTACGTGAGGGCATGGGTGTGGGTAGTTTTTGGGTGGGAGTGGAGAGG
CGTGGTGGCTTGGGTACATCCCACAAGAAAAGCTGAAGAAGGATAAAGCA
ATGGAGAAGAGGAATGGAGAAGGGGGAGAGAAGTGGGTGGAGGAAGGGCA
GTAAAAGAAATGAATCGACTGAAGGAGCTGTTCAATAACCAAAAGTAAGA
AACGACTTGTAAATTCATCTCATCGGTCAACATCTATTGTAATTCATCTC
AGTTATCTACATCTTGTGAAATTCATAACGTCCCGCATATTTGATAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|326500

>mRNA_2341-protein ID=mRNA_2341-protein|Name=jgi.p|Nanoce1779_2|326500|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MQVLEDVRLHAIVLEGCTATATTYRQRAQDKQSNNKMMISAFDLAAGWSM
ARTSAALAIVSLLCLSSSSMAVGRRLRTRICTTLQRLRRRQRRSWQDIKQ
DKETALFRCDTFHADVILVLGGDRHRELTAVRLFHEKAIVSALALPHHQH
KSRIHIDYTRTPLILSSGTIGPDDLPSYLPPSLCITFDRRAICTLTNFTS
LSSSFQAQGVRRVLVLTSSSHLPRALAVGSVVLGAGAIDVRGLGIEGSGG
GGQGEEGWLRRGRDYVRAWVWVVFGWEWRGVVAWVHPTRKAEEG*
back to top

mRNA from alignment at scaffold_5:102096..103393-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2341 ID=mRNA_2341|Name=jgi.p|Nanoce1779_2|326500|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp|location=Sequence derived from alignment at scaffold_5:102096..103393- (Nannochloropsis oceanica)
TTTTATTGAGGAGTGCAATCCCTTGCCGTCCATCTTTCCTATGTCCCATG
CGGAACGAAAAAGAAGAAGAAGCAACACGTACTTGAAGTCAAATGCTTCA
CCCCATACCAAACTACTTACAGATCAAAAAACCTGTCAAAGTCGCCAGTA
AAACTCGGACCAAATAAGGGGTGAATATGCAACAAATTATTGTTGAAAGG
CTCCCCCTCGTATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTT
CTAGAGGGATGTACGGCAACGGCAACTACTTACAGGCAAAGAGCACAAGA
CAAGCAAAGCAACAACAAGATGATGATCTCCGCGTTTGATCTTGCGGCTG
GTTGGTCCATGGCACGCACTAGTGCAGCGCTTGCCATTGTCTCCCTTTTG
TGCCTCTCTTCTTCTTCCATGGCCGTGGGCCGCCGTCTCCGCACCCGGAT
ATGCACCACTTTGCAGCGACTTCGCCGTAGACAAAGGCGTTCATGGCAAG
ACATAAAGCAGGACAAGGAAACTGCTCTATTTCGCTGTGACACCTTCCAT
GCGGACGTCATTCTAGTCTTGGGTGGAGACCGCCATCGGGAGCTCACAGC
CGTGCGTCTTTTCCATGAGAAAGCAATCGTCTCTGCCCTCGCCCTTCCCC
ACCACCAACATAAAAGTCGCATCCACATCGACTACACCCGCACACCCCTA
ATCCTCTCCTCGGGCACCATCGGTCCAGATGACCTTCCTTCCTACCTCCC
ACCCTCGCTTTGCATCACCTTTGATCGACGCGCCATTTGCACTCTGACCA
ACTTTACGTCCCTATCTTCGTCTTTTCAAGCCCAGGGGGTACGGCGGGTC
CTAGTTTTGACTTCGTCTTCCCATCTCCCCCGTGCGCTGGCTGTAGGCAG
CGTGGTGCTAGGGGCAGGAGCGATAGATGTGCGTGGGCTCGGTATCGAAG
GAAGTGGTGGAGGAGGACAGGGAGAGGAAGGGTGGTTGAGGAGGGGAAGG
GATTACGTGAGGGCATGGGTGTGGGTAGTTTTTGGGTGGGAGTGGAGAGG
CGTGGTGGCTTGGGTACATCCCACAAGAAAAGCTGAAGAAGGATAAAGCA
ATGGAGAAGAGGAATGGAGAAGGGGGAGAGAAGTGGGTGGAGGAAGGGCA
GTAAAAGAAATGAATCGACTGAAGGAGCTGTTCAATAACCAAAAGTAAGA
AACGACTTGTAAATTCATCTCATCGGTCAACATCTATTGTAATTCATCTC
AGTTATCTACATCTTGTGAAATTCATAACGTCCCGCATATTTGATAAG
back to top

Coding sequence (CDS) from alignment at scaffold_5:102096..103393-

>mRNA_2341 ID=mRNA_2341|Name=jgi.p|Nanoce1779_2|326500|organism=Nannochloropsis oceanica|type=CDS|length=885bp|location=Sequence derived from alignment at scaffold_5:102096..103393- (Nannochloropsis oceanica)
ATGCAAGTCCTAGAGGACGTCAGGTTGCATGCGATAGTTCTAGAGGGATG
TACGGCAACGGCAACTACTTACAGGCAAAGAGCACAAGACAAGCAAAGCA
ACAACAAGATGATGATCTCCGCGTTTGATCTTGCGGCTGGTTGGTCCATG
GCACGCACTAGTGCAGCGCTTGCCATTGTCTCCCTTTTGTGCCTCTCTTC
TTCTTCCATGGCCGTGGGCCGCCGTCTCCGCACCCGGATATGCACCACTT
TGCAGCGACTTCGCCGTAGACAAAGGCGTTCATGGCAAGACATAAAGCAG
GACAAGGAAACTGCTCTATTTCGCTGTGACACCTTCCATGCGGACGTCAT
TCTAGTCTTGGGTGGAGACCGCCATCGGGAGCTCACAGCCGTGCGTCTTT
TCCATGAGAAAGCAATCGTCTCTGCCCTCGCCCTTCCCCACCACCAACAT
AAAAGTCGCATCCACATCGACTACACCCGCACACCCCTAATCCTCTCCTC
GGGCACCATCGGTCCAGATGACCTTCCTTCCTACCTCCCACCCTCGCTTT
GCATCACCTTTGATCGACGCGCCATTTGCACTCTGACCAACTTTACGTCC
CTATCTTCGTCTTTTCAAGCCCAGGGGGTACGGCGGGTCCTAGTTTTGAC
TTCGTCTTCCCATCTCCCCCGTGCGCTGGCTGTAGGCAGCGTGGTGCTAG
GGGCAGGAGCGATAGATGTGCGTGGGCTCGGTATCGAAGGAAGTGGTGGA
GGAGGACAGGGAGAGGAAGGGTGGTTGAGGAGGGGAAGGGATTACGTGAG
GGCATGGGTGTGGGTAGTTTTTGGGTGGGAGTGGAGAGGCGTGGTGGCTT
GGGTACATCCCACAAGAAAAGCTGAAGAAGGATAA
back to top
Synonyms
Publications