jgi.p|Nanoce1779_2|580033, mRNA_2340 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580033
Unique NamemRNA_2340
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1716
Alignment locationscaffold_5:100526..102381 +

Link to JBrowse

Properties
Property NameValue
TranscriptId580119
TrackFilteredModels2
ProteinId580033
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:100526..102381 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580033gene_2340Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580033mRNA_2340-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2340CDS_2340Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2340 ID=mRNA_2340|Name=jgi.p|Nanoce1779_2|580033|organism=Nannochloropsis oceanica|type=mRNA|length=1716bp
CGCTCGGGTTATCCGCTTGATTCGTAACGAATTATGCTTACCACTCCCAC
AACGGTGGTCGGATACCATTTGGCTGTTTTAAAAAAAGAAAGAAAATACG
AAATTGTAAGCGATATTAAGGCAGACTATGTCGAAAAGGAGAATGCAGTT
CCTAGCGGCCCCTTTGGCACTTCTACTGCCATATTTCTTACTGCTGTTTC
TCATCCAAGACTTTCAGTCGGACGCGCGTCTTCAGCAGCACGATTTCCGA
GCGACGAAAAAAATATGTGAGATTTCACCTTTACTCGGCGAATTATTGAT
AGTTGTGTCCTTTCATTGGGATGTTACCAAGCTGATCTATTTCACTACCG
TACTTGATACAATTCGGACATACGAGACACGCGTCCATATTGTTATCGTG
ACTGACCACGAGAAGGCATTAAGAAGGGCCCTCCAAAAAATGGAGCCCTT
CCATGGTAGTAACCCGACATTGACATTTTCGCAAGTACCTCCGACAAATG
ATACCAACAAATTTGCCATGTGTTGGGCTCATAGACAGGTGATAGAGAAA
CAATTTGAGCAATATCCCAATTTTACGTCTATTATATATCTGGAGGATGA
CCAACTTTTCAGCTGGCCCACATTAGTTTCCTGGGCCCTTGACACAGAAG
TGCTGGCGCCTCTGAATTTTACTCGTTGCATATATCGGACGGAGGTAGAT
GTAGAGACAGGAGAGTCAAACATGGGAGATTGGAGGACTCCCGTAAAGTT
GACTCACGAAAACACTATAAATGTGACACACACTTTGGACTTTGCTCGGG
TGCAGAACCGTCTCCAGAACGCCCCTCATTGCCATTGCGGGAAGCATCGC
GATGGGGCGCCGTGGCCCTGCAGAGTACACGACAATTATGTTTCCCCCAC
GGACCCATTTCAAGGCATTTGGATGGCCTCTCGAGCTCAACTGGTTTCCT
TTATGGCGCATCCCTTTTGGGAAAAAGACGCCGTATATGATGCTAAACTC
AAATTTGACATGGGGTACCCAGAACGCACGACGTTCATGAATCTCATGAT
CAACGTGCCTACAGGATATCGGTCGAACTGCATGGTACCGCTCGTGCCCA
ACGACGAAATAGGCGGGCTTAGAAATTTCAGTCTACCTCTGGTTGCTGGA
ATAGAGCATATGCGAAACAGGTACAGCAGTATGCCTAACACTCGCTTGGG
GAAACTTCACGTCGAGGAGGCAATATAGGGAGCCTTCCGGTCACACTCAA
TGAGTACCACGAGTTCTTTCCTCCCAACAGTGAGGACGATCAGACATTCA
GAAAGCAAACACATTACGTCACGCGCCCTGTACAAAACCACACAAACATG
ACCATGACTAGATACAGGTGAGAGAGAGGCGAGCCGCTGGGAATTTTTTT
ACCTTTTCCCTCTTTATCCTGACACTGTCCCTTATCAAATATGCGGGACG
TTATGAATTTCACAAGATGTAGATAACTGAGATGAATTACAATAGATGTT
GACCGATGAGATGAATTTACAAGTCGTTTCTTACTTTTGGTTATTGAACA
GCTCCTTCAGTCGATTCATTTCTTTTACTGCCCTTCCTCCACCCACTTCT
CTCCCCCTTCTCCATTCCTCTTCTCCATTGCTTTATCCTTCTTCAGCTTT
TCTTGTGGGATGTACCCAAGCCACCACGCCTCTCCACTCCCACCCAAAAA
CTACCCACACCCATGC
back to top

protein sequence of jgi.p|Nanoce1779_2|580033

>mRNA_2340-protein ID=mRNA_2340-protein|Name=jgi.p|Nanoce1779_2|580033|organism=Nannochloropsis oceanica|type=polypeptide|length=367bp
MSKRRMQFLAAPLALLLPYFLLLFLIQDFQSDARLQQHDFRATKKICEIS
PLLGELLIVVSFHWDVTKLIYFTTVLDTIRTYETRVHIVIVTDHEKALRR
ALQKMEPFHGSNPTLTFSQVPPTNDTNKFAMCWAHRQVIEKQFEQYPNFT
SIIYLEDDQLFSWPTLVSWALDTEVLAPLNFTRCIYRTEVDVETGESNMG
DWRTPVKLTHENTINVTHTLDFARVQNRLQNAPHCHCGKHRDGAPWPCRV
HDNYVSPTDPFQGIWMASRAQLVSFMAHPFWEKDAVYDAKLKFDMGYPER
TTFMNLMINVPTGYRSNCMVPLVPNDEIGGLRNFSLPLVAGIEHMRNRYS
SMPNTRLGKLHVEEAI*
back to top

mRNA from alignment at scaffold_5:100526..102381+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2340 ID=mRNA_2340|Name=jgi.p|Nanoce1779_2|580033|organism=Nannochloropsis oceanica|type=mRNA|length=1856bp|location=Sequence derived from alignment at scaffold_5:100526..102381+ (Nannochloropsis oceanica)
CGCTCGGGTTATCCGCTTGATTCGTAACGAATTATGCTTACCACTCCCAC
AACGGTGGTCGGATACCATTTGGCTGTTTTAAAAAAAGAAAGAAAATACG
AAATTGTAAGCGATATTAAGGCAGGTAAGCATTTCTCAACTTCAGGAAAT
AGAGGTGTCTTTGTCATGTGTGGTGACAAGTGCAATTCATGTCTCGTACT
CACTTACTTGCTATCGATAAAAATTACAATTGGTTCACTATTTCATTTTT
TAATTTCATGATAGACTATGTCGAAAAGGAGAATGCAGTTCCTAGCGGCC
CCTTTGGCACTTCTACTGCCATATTTCTTACTGCTGTTTCTCATCCAAGA
CTTTCAGTCGGACGCGCGTCTTCAGCAGCACGATTTCCGAGCGACGAAAA
AAATATGTGAGATTTCACCTTTACTCGGCGAATTATTGATAGTTGTGTCC
TTTCATTGGGATGTTACCAAGCTGATCTATTTCACTACCGTACTTGATAC
AATTCGGACATACGAGACACGCGTCCATATTGTTATCGTGACTGACCACG
AGAAGGCATTAAGAAGGGCCCTCCAAAAAATGGAGCCCTTCCATGGTAGT
AACCCGACATTGACATTTTCGCAAGTACCTCCGACAAATGATACCAACAA
ATTTGCCATGTGTTGGGCTCATAGACAGGTGATAGAGAAACAATTTGAGC
AATATCCCAATTTTACGTCTATTATATATCTGGAGGATGACCAACTTTTC
AGCTGGCCCACATTAGTTTCCTGGGCCCTTGACACAGAAGTGCTGGCGCC
TCTGAATTTTACTCGTTGCATATATCGGACGGAGGTAGATGTAGAGACAG
GAGAGTCAAACATGGGAGATTGGAGGACTCCCGTAAAGTTGACTCACGAA
AACACTATAAATGTGACACACACTTTGGACTTTGCTCGGGTGCAGAACCG
TCTCCAGAACGCCCCTCATTGCCATTGCGGGAAGCATCGCGATGGGGCGC
CGTGGCCCTGCAGAGTACACGACAATTATGTTTCCCCCACGGACCCATTT
CAAGGCATTTGGATGGCCTCTCGAGCTCAACTGGTTTCCTTTATGGCGCA
TCCCTTTTGGGAAAAAGACGCCGTATATGATGCTAAACTCAAATTTGACA
TGGGGTACCCAGAACGCACGACGTTCATGAATCTCATGATCAACGTGCCT
ACAGGATATCGGTCGAACTGCATGGTACCGCTCGTGCCCAACGACGAAAT
AGGCGGGCTTAGAAATTTCAGTCTACCTCTGGTTGCTGGAATAGAGCATA
TGCGAAACAGGTACAGCAGTATGCCTAACACTCGCTTGGGGAAACTTCAC
GTCGAGGAGGCAATATAGGGAGCCTTCCGGTCACACTCAATGAGTACCAC
GAGTTCTTTCCTCCCAACAGTGAGGACGATCAGACATTCAGAAAGCAAAC
ACATTACGTCACGCGCCCTGTACAAAACCACACAAACATGACCATGACTA
GATACAGGTGAGAGAGAGGCGAGCCGCTGGGAATTTTTTTACCTTTTCCC
TCTTTATCCTGACACTGTCCCTTATCAAATATGCGGGACGTTATGAATTT
CACAAGATGTAGATAACTGAGATGAATTACAATAGATGTTGACCGATGAG
ATGAATTTACAAGTCGTTTCTTACTTTTGGTTATTGAACAGCTCCTTCAG
TCGATTCATTTCTTTTACTGCCCTTCCTCCACCCACTTCTCTCCCCCTTC
TCCATTCCTCTTCTCCATTGCTTTATCCTTCTTCAGCTTTTCTTGTGGGA
TGTACCCAAGCCACCACGCCTCTCCACTCCCACCCAAAAACTACCCACAC
CCATGC
back to top

Coding sequence (CDS) from alignment at scaffold_5:100526..102381+

>mRNA_2340 ID=mRNA_2340|Name=jgi.p|Nanoce1779_2|580033|organism=Nannochloropsis oceanica|type=CDS|length=1101bp|location=Sequence derived from alignment at scaffold_5:100526..102381+ (Nannochloropsis oceanica)
ATGTCGAAAAGGAGAATGCAGTTCCTAGCGGCCCCTTTGGCACTTCTACT
GCCATATTTCTTACTGCTGTTTCTCATCCAAGACTTTCAGTCGGACGCGC
GTCTTCAGCAGCACGATTTCCGAGCGACGAAAAAAATATGTGAGATTTCA
CCTTTACTCGGCGAATTATTGATAGTTGTGTCCTTTCATTGGGATGTTAC
CAAGCTGATCTATTTCACTACCGTACTTGATACAATTCGGACATACGAGA
CACGCGTCCATATTGTTATCGTGACTGACCACGAGAAGGCATTAAGAAGG
GCCCTCCAAAAAATGGAGCCCTTCCATGGTAGTAACCCGACATTGACATT
TTCGCAAGTACCTCCGACAAATGATACCAACAAATTTGCCATGTGTTGGG
CTCATAGACAGGTGATAGAGAAACAATTTGAGCAATATCCCAATTTTACG
TCTATTATATATCTGGAGGATGACCAACTTTTCAGCTGGCCCACATTAGT
TTCCTGGGCCCTTGACACAGAAGTGCTGGCGCCTCTGAATTTTACTCGTT
GCATATATCGGACGGAGGTAGATGTAGAGACAGGAGAGTCAAACATGGGA
GATTGGAGGACTCCCGTAAAGTTGACTCACGAAAACACTATAAATGTGAC
ACACACTTTGGACTTTGCTCGGGTGCAGAACCGTCTCCAGAACGCCCCTC
ATTGCCATTGCGGGAAGCATCGCGATGGGGCGCCGTGGCCCTGCAGAGTA
CACGACAATTATGTTTCCCCCACGGACCCATTTCAAGGCATTTGGATGGC
CTCTCGAGCTCAACTGGTTTCCTTTATGGCGCATCCCTTTTGGGAAAAAG
ACGCCGTATATGATGCTAAACTCAAATTTGACATGGGGTACCCAGAACGC
ACGACGTTCATGAATCTCATGATCAACGTGCCTACAGGATATCGGTCGAA
CTGCATGGTACCGCTCGTGCCCAACGACGAAATAGGCGGGCTTAGAAATT
TCAGTCTACCTCTGGTTGCTGGAATAGAGCATATGCGAAACAGGTACAGC
AGTATGCCTAACACTCGCTTGGGGAAACTTCACGTCGAGGAGGCAATATA
G
back to top
Synonyms
Publications