jgi.p|Nanoce1779_2|580004, mRNA_2334 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580004
Unique NamemRNA_2334
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2193
Alignment locationscaffold_5:77510..79702 -

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Properties
Property NameValue
TranscriptId580090
TrackFilteredModels2
ProteinId580004
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:77510..79702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580004gene_2334Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580004mRNA_2334-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2334CDS_2334Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2334 ID=mRNA_2334|Name=jgi.p|Nanoce1779_2|580004|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp
ACAGGCAGGCACACGGATAAGAAGAGGCGGCTGGGGAGCTGCACAACGCG
ATGGTAGCTACGATGTGGGCACCCTTCTCCGCTGCCAAATCAGGGAAGGG
GGTCGATATTATGGACAGAAGCAACCCCAGTGATATAATCCACGCAAAGG
AAGACTCTGTCGCCGTCCAAAAACCCAACCATCAACTATCACCACCTCCG
CCGACTCAAGTGGACATGCAGGCACATGTTGGCCTCCGCGGAGTCGCTGC
CGTCTGGATCGTAGTCTTTCACTGCCTCGGTGACCCTAAGTACCATTCTG
GATGGGTAGTGGCCTTGCAAGGCTCTAGCTTGATGCCACTCTTCTTCATG
CTCTCGGGCTTCTCCTTGACCGTAACCTATGGCCGGACGATGTGGGCGTC
TTCGTCGTCGTCTTGTTTGTCTTGTTTCAGCCGACGTCGTCAACCAGACA
TCAACAAAAGCATAGCTAAAGATGTTGTACATACTGATATTGAACTAGTG
GAGGAAGGAAAGCGCCTTTCTTCCAGGCCCGTCGGCTGCTCTTCTCAGCC
ATCCCCCTCGCCCGCCTCGAAACGGCCGCCCTCTCCGTCCTCCTTCTCCG
CTCGCTCCCTCCCGCCCTTTGACACCCGCGCGTTCTATCAGAACCGCATT
GCGCGTGTAATGCCCGTATATTGGCTATCCATACTCGTCTCCATCCCTCT
CTGGCTCCTAAATATAGGCGACTTCCCCTTCGCACTCCAAACATTCCTCC
CCTCCCTCGCCAGTAGTGTCATTCCCGTGACCACCCTCTTCTCCTTCCTC
ACCGGCAGCTACCTTGCGGCCATCAATCCCGTAGGATGGTTCATCACGAC
CCTTGTCTTCTTCTGGTTTTTTTTCCCTTACTGGCTGCCCACCATGCAAC
GTCTTTCTGACCGCGCCCTGGTCAACACCGTCACCTGGGGCTTCTGGCTA
CAGCTTCTCCTCATTCAGGGTATCTATTCGCTCATGCCTCTTATCACGGA
CATCCGGCCCTTTGGGACTGCCACCACCAATCCTCTCTCTCGCTTTCCCT
TGTTCTTGATGGGCATGGCGGCGGGCGTGTTAACTCTGAGGTACCCCGTG
GTTGGAGGAGGTAGGGTGGGAAGGACGGCAGATAGAGACGAGCACAGTAG
TAGTAGTGGTAGTAGTAGCAGCAGCAGATGCAGCAGGAGCGTTGAAGGGA
AAAAGGAGGATTGTTTGCCTCGGCACACCAACAGCAAGCAGCTGCAAATG
CGTATTCTAAATGGAGCAGGTGCAGCCACAGAAGGTGGAGGAGTACTCGG
GGAAGGAGGGCGGGAAGGAGGAGTGAAAGAAGACGAGTCCACCGTAGAGG
TAATAGCAGTGGAGGAAATGGAAGAACAAGGAGCGAATGCATCGATGCCC
TGGCCCGCATGCATTTTCGGCCTGCCCTTGCCCGTGTGCCTCACATCTCG
CCGGAACAGCAGTAGCGCTAGTTGCACAACCACAACGGTCCCCACTGCGG
CGAAAATGGCATTTTTCATCCCCCCTCATTCTCCGCGGACCCAGTCAGAG
TGGGCTCGCCTCGCCACGCAACAGTCCCTGGCCCTTCTTTTCCTCACCTT
ACTCATTTCCGGCATCGACACCGGTGTTCGCGTTCTCTCACAAGGCCAAC
ACACCATCAGTGCCCAGGTCTGGTTCCAGGGGTTGGTCGCCATGACTCAG
CTGAACGTCTTCCTAGCCCTCACTCGGGACGGAAATCTCTCCCTGGCATC
CCGTTTCCTTCGCCTGCCTTTCTGCAAGTGGATCGGGCGCATTTCGATGA
ATATCTACTTGATCCATTATCCTCTCCTTGGCTATCTGGCCCTGGGGTTA
CACTTTCCCCAATCCAAGGACCTCCTAAACTGCTATAATCTAGGGAGTGG
CGGGGTGGAGGATATGACAGAGCGAGAGGCTTTACGAGTGACCGAGTGTC
AGACCTTAATCAAAGATGTGAGAGAGTTGCCGTGGTGGAGTGTGTTTGTG
ATCTTGCCTTTGGCTGCGCTGCTTGGGGAAGCACTGGCACGTTGGGTGGA
GGAGCCGGCAAGGCGCGCGTTGAGGCACCGGAAGGGGTAGTCCCACAGAA
AAAGAGGAGATGTTGAGACTGGTAAGAATTGTTTGAGAGAATCAAACAAA
CAAGATCAGAAAAAAGAGTGTGGTAGCAACGTCGATCCTCGAT
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protein sequence of jgi.p|Nanoce1779_2|580004

>mRNA_2334-protein ID=mRNA_2334-protein|Name=jgi.p|Nanoce1779_2|580004|organism=Nannochloropsis oceanica|type=polypeptide|length=680bp
MVATMWAPFSAAKSGKGVDIMDRSNPSDIIHAKEDSVAVQKPNHQLSPPP
PTQVDMQAHVGLRGVAAVWIVVFHCLGDPKYHSGWVVALQGSSLMPLFFM
LSGFSLTVTYGRTMWASSSSSCLSCFSRRRQPDINKSIAKDVVHTDIELV
EEGKRLSSRPVGCSSQPSPSPASKRPPSPSSFSARSLPPFDTRAFYQNRI
ARVMPVYWLSILVSIPLWLLNIGDFPFALQTFLPSLASSVIPVTTLFSFL
TGSYLAAINPVGWFITTLVFFWFFFPYWLPTMQRLSDRALVNTVTWGFWL
QLLLIQGIYSLMPLITDIRPFGTATTNPLSRFPLFLMGMAAGVLTLRYPV
VGGGRVGRTADRDEHSSSSGSSSSSRCSRSVEGKKEDCLPRHTNSKQLQM
RILNGAGAATEGGGVLGEGGREGGVKEDESTVEVIAVEEMEEQGANASMP
WPACIFGLPLPVCLTSRRNSSSASCTTTTVPTAAKMAFFIPPHSPRTQSE
WARLATQQSLALLFLTLLISGIDTGVRVLSQGQHTISAQVWFQGLVAMTQ
LNVFLALTRDGNLSLASRFLRLPFCKWIGRISMNIYLIHYPLLGYLALGL
HFPQSKDLLNCYNLGSGGVEDMTEREALRVTECQTLIKDVRELPWWSVFV
ILPLAALLGEALARWVEEPARRALRHRKG*
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mRNA from alignment at scaffold_5:77510..79702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2334 ID=mRNA_2334|Name=jgi.p|Nanoce1779_2|580004|organism=Nannochloropsis oceanica|type=mRNA|length=2193bp|location=Sequence derived from alignment at scaffold_5:77510..79702- (Nannochloropsis oceanica)
ACAGGCAGGCACACGGATAAGAAGAGGCGGCTGGGGAGCTGCACAACGCG
ATGGTAGCTACGATGTGGGCACCCTTCTCCGCTGCCAAATCAGGGAAGGG
GGTCGATATTATGGACAGAAGCAACCCCAGTGATATAATCCACGCAAAGG
AAGACTCTGTCGCCGTCCAAAAACCCAACCATCAACTATCACCACCTCCG
CCGACTCAAGTGGACATGCAGGCACATGTTGGCCTCCGCGGAGTCGCTGC
CGTCTGGATCGTAGTCTTTCACTGCCTCGGTGACCCTAAGTACCATTCTG
GATGGGTAGTGGCCTTGCAAGGCTCTAGCTTGATGCCACTCTTCTTCATG
CTCTCGGGCTTCTCCTTGACCGTAACCTATGGCCGGACGATGTGGGCGTC
TTCGTCGTCGTCTTGTTTGTCTTGTTTCAGCCGACGTCGTCAACCAGACA
TCAACAAAAGCATAGCTAAAGATGTTGTACATACTGATATTGAACTAGTG
GAGGAAGGAAAGCGCCTTTCTTCCAGGCCCGTCGGCTGCTCTTCTCAGCC
ATCCCCCTCGCCCGCCTCGAAACGGCCGCCCTCTCCGTCCTCCTTCTCCG
CTCGCTCCCTCCCGCCCTTTGACACCCGCGCGTTCTATCAGAACCGCATT
GCGCGTGTAATGCCCGTATATTGGCTATCCATACTCGTCTCCATCCCTCT
CTGGCTCCTAAATATAGGCGACTTCCCCTTCGCACTCCAAACATTCCTCC
CCTCCCTCGCCAGTAGTGTCATTCCCGTGACCACCCTCTTCTCCTTCCTC
ACCGGCAGCTACCTTGCGGCCATCAATCCCGTAGGATGGTTCATCACGAC
CCTTGTCTTCTTCTGGTTTTTTTTCCCTTACTGGCTGCCCACCATGCAAC
GTCTTTCTGACCGCGCCCTGGTCAACACCGTCACCTGGGGCTTCTGGCTA
CAGCTTCTCCTCATTCAGGGTATCTATTCGCTCATGCCTCTTATCACGGA
CATCCGGCCCTTTGGGACTGCCACCACCAATCCTCTCTCTCGCTTTCCCT
TGTTCTTGATGGGCATGGCGGCGGGCGTGTTAACTCTGAGGTACCCCGTG
GTTGGAGGAGGTAGGGTGGGAAGGACGGCAGATAGAGACGAGCACAGTAG
TAGTAGTGGTAGTAGTAGCAGCAGCAGATGCAGCAGGAGCGTTGAAGGGA
AAAAGGAGGATTGTTTGCCTCGGCACACCAACAGCAAGCAGCTGCAAATG
CGTATTCTAAATGGAGCAGGTGCAGCCACAGAAGGTGGAGGAGTACTCGG
GGAAGGAGGGCGGGAAGGAGGAGTGAAAGAAGACGAGTCCACCGTAGAGG
TAATAGCAGTGGAGGAAATGGAAGAACAAGGAGCGAATGCATCGATGCCC
TGGCCCGCATGCATTTTCGGCCTGCCCTTGCCCGTGTGCCTCACATCTCG
CCGGAACAGCAGTAGCGCTAGTTGCACAACCACAACGGTCCCCACTGCGG
CGAAAATGGCATTTTTCATCCCCCCTCATTCTCCGCGGACCCAGTCAGAG
TGGGCTCGCCTCGCCACGCAACAGTCCCTGGCCCTTCTTTTCCTCACCTT
ACTCATTTCCGGCATCGACACCGGTGTTCGCGTTCTCTCACAAGGCCAAC
ACACCATCAGTGCCCAGGTCTGGTTCCAGGGGTTGGTCGCCATGACTCAG
CTGAACGTCTTCCTAGCCCTCACTCGGGACGGAAATCTCTCCCTGGCATC
CCGTTTCCTTCGCCTGCCTTTCTGCAAGTGGATCGGGCGCATTTCGATGA
ATATCTACTTGATCCATTATCCTCTCCTTGGCTATCTGGCCCTGGGGTTA
CACTTTCCCCAATCCAAGGACCTCCTAAACTGCTATAATCTAGGGAGTGG
CGGGGTGGAGGATATGACAGAGCGAGAGGCTTTACGAGTGACCGAGTGTC
AGACCTTAATCAAAGATGTGAGAGAGTTGCCGTGGTGGAGTGTGTTTGTG
ATCTTGCCTTTGGCTGCGCTGCTTGGGGAAGCACTGGCACGTTGGGTGGA
GGAGCCGGCAAGGCGCGCGTTGAGGCACCGGAAGGGGTAGTCCCACAGAA
AAAGAGGAGATGTTGAGACTGGTAAGAATTGTTTGAGAGAATCAAACAAA
CAAGATCAGAAAAAAGAGTGTGGTAGCAACGTCGATCCTCGAT
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Coding sequence (CDS) from alignment at scaffold_5:77510..79702-

>mRNA_2334 ID=mRNA_2334|Name=jgi.p|Nanoce1779_2|580004|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_5:77510..79702- (Nannochloropsis oceanica)
ATGGTAGCTACGATGTGGGCACCCTTCTCCGCTGCCAAATCAGGGAAGGG
GGTCGATATTATGGACAGAAGCAACCCCAGTGATATAATCCACGCAAAGG
AAGACTCTGTCGCCGTCCAAAAACCCAACCATCAACTATCACCACCTCCG
CCGACTCAAGTGGACATGCAGGCACATGTTGGCCTCCGCGGAGTCGCTGC
CGTCTGGATCGTAGTCTTTCACTGCCTCGGTGACCCTAAGTACCATTCTG
GATGGGTAGTGGCCTTGCAAGGCTCTAGCTTGATGCCACTCTTCTTCATG
CTCTCGGGCTTCTCCTTGACCGTAACCTATGGCCGGACGATGTGGGCGTC
TTCGTCGTCGTCTTGTTTGTCTTGTTTCAGCCGACGTCGTCAACCAGACA
TCAACAAAAGCATAGCTAAAGATGTTGTACATACTGATATTGAACTAGTG
GAGGAAGGAAAGCGCCTTTCTTCCAGGCCCGTCGGCTGCTCTTCTCAGCC
ATCCCCCTCGCCCGCCTCGAAACGGCCGCCCTCTCCGTCCTCCTTCTCCG
CTCGCTCCCTCCCGCCCTTTGACACCCGCGCGTTCTATCAGAACCGCATT
GCGCGTGTAATGCCCGTATATTGGCTATCCATACTCGTCTCCATCCCTCT
CTGGCTCCTAAATATAGGCGACTTCCCCTTCGCACTCCAAACATTCCTCC
CCTCCCTCGCCAGTAGTGTCATTCCCGTGACCACCCTCTTCTCCTTCCTC
ACCGGCAGCTACCTTGCGGCCATCAATCCCGTAGGATGGTTCATCACGAC
CCTTGTCTTCTTCTGGTTTTTTTTCCCTTACTGGCTGCCCACCATGCAAC
GTCTTTCTGACCGCGCCCTGGTCAACACCGTCACCTGGGGCTTCTGGCTA
CAGCTTCTCCTCATTCAGGGTATCTATTCGCTCATGCCTCTTATCACGGA
CATCCGGCCCTTTGGGACTGCCACCACCAATCCTCTCTCTCGCTTTCCCT
TGTTCTTGATGGGCATGGCGGCGGGCGTGTTAACTCTGAGGTACCCCGTG
GTTGGAGGAGGTAGGGTGGGAAGGACGGCAGATAGAGACGAGCACAGTAG
TAGTAGTGGTAGTAGTAGCAGCAGCAGATGCAGCAGGAGCGTTGAAGGGA
AAAAGGAGGATTGTTTGCCTCGGCACACCAACAGCAAGCAGCTGCAAATG
CGTATTCTAAATGGAGCAGGTGCAGCCACAGAAGGTGGAGGAGTACTCGG
GGAAGGAGGGCGGGAAGGAGGAGTGAAAGAAGACGAGTCCACCGTAGAGG
TAATAGCAGTGGAGGAAATGGAAGAACAAGGAGCGAATGCATCGATGCCC
TGGCCCGCATGCATTTTCGGCCTGCCCTTGCCCGTGTGCCTCACATCTCG
CCGGAACAGCAGTAGCGCTAGTTGCACAACCACAACGGTCCCCACTGCGG
CGAAAATGGCATTTTTCATCCCCCCTCATTCTCCGCGGACCCAGTCAGAG
TGGGCTCGCCTCGCCACGCAACAGTCCCTGGCCCTTCTTTTCCTCACCTT
ACTCATTTCCGGCATCGACACCGGTGTTCGCGTTCTCTCACAAGGCCAAC
ACACCATCAGTGCCCAGGTCTGGTTCCAGGGGTTGGTCGCCATGACTCAG
CTGAACGTCTTCCTAGCCCTCACTCGGGACGGAAATCTCTCCCTGGCATC
CCGTTTCCTTCGCCTGCCTTTCTGCAAGTGGATCGGGCGCATTTCGATGA
ATATCTACTTGATCCATTATCCTCTCCTTGGCTATCTGGCCCTGGGGTTA
CACTTTCCCCAATCCAAGGACCTCCTAAACTGCTATAATCTAGGGAGTGG
CGGGGTGGAGGATATGACAGAGCGAGAGGCTTTACGAGTGACCGAGTGTC
AGACCTTAATCAAAGATGTGAGAGAGTTGCCGTGGTGGAGTGTGTTTGTG
ATCTTGCCTTTGGCTGCGCTGCTTGGGGAAGCACTGGCACGTTGGGTGGA
GGAGCCGGCAAGGCGCGCGTTGAGGCACCGGAAGGGGTAG
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Synonyms
Publications