jgi.p|Nanoce1779_2|579988, mRNA_2331 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579988
Unique NamemRNA_2331
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length769
Alignment locationscaffold_5:69689..71277 -

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Properties
Property NameValue
TranscriptId580074
TrackFilteredModels2
ProteinId579988
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:69689..71277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579988gene_2331Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579988mRNA_2331-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2331CDS_2331Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2331 ID=mRNA_2331|Name=jgi.p|Nanoce1779_2|579988|organism=Nannochloropsis oceanica|type=mRNA|length=769bp
ACAGTCCACCCCACATTTCCTCAACAAGAACAATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAGTGGGTGATG
TCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGAAGCTG
TCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCCAAGGA
CGACACGCCCGGGTGCACCAAGGAGGCCAAGGCTTTCAATGCCGCGCTGG
CTGACTTCAAGAAGAAAGGCGCCGAGGTGTTTGGCATCTCCAGTGACCAG
GATCACTCCGCCTTCGTCGAGAAATACGGCCTGCAAATGCAGCTCCTCTC
GGACGTGGGTGGGGCCACCCGCAAGGCCTACAAGGTACCTACCTCCCTCT
TCGGCGCGCTGGAGGGACGTGTGACTTACGTGATTGGCAAGGACCAGACC
GTCAAGCTGATGTACGACAACCAATTCGCCCCTGAGAGCCATGTGGAGAA
GTCACTCATGGCCTTGGTCTAAACGTTCCATTTAAAATTTTGAATTATGT
GTGTTAGTGAATGTTGGAGGTGTGGGGTGTGGGGAGAGCGGGAAGTGTTG
ATCAGTGGTACTTGATTTGATTTGCGTGAGCGGACAGGAGGAACAAAAGA
TGTCCCGTGAAAGGGCAAAGAGAGAAGATGAGAAATACATCTATAGAAAC
AAGCTAGCAGCCAATGCGA
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protein sequence of jgi.p|Nanoce1779_2|579988

>mRNA_2331-protein ID=mRNA_2331-protein|Name=jgi.p|Nanoce1779_2|579988|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MRVISVLAISFLAAAQAFMPTATPVTRSRGALSMVKVGDVAPDFSLKDQN
NKIVKLSSFKGKKPVVLFFYPKDDTPGCTKEAKAFNAALADFKKKGAEVF
GISSDQDHSAFVEKYGLQMQLLSDVGGATRKAYKVPTSLFGALEGRVTYV
IGKDQTVKLMYDNQFAPESHVEKSLMALV*
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mRNA from alignment at scaffold_5:69689..71277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2331 ID=mRNA_2331|Name=jgi.p|Nanoce1779_2|579988|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at scaffold_5:69689..71277- (Nannochloropsis oceanica)
ACAGTCCACCCCACATTTCCTCAACAAGAACAATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAGTAAGTTTAA
TTGACCGGTGATGGTTGTCGCCAATGATTATTTTTTAATGAGACCGTGGA
GTGGGGAAGGGATCGTTACTCACTTACATGATGAGGAAAAATCGGTGCTG
GCGCCTGCACACGTAGGAAAAGGGGTATCCACCCTCTAGCCCCGTATGAC
TGCTTACATGAGTCATTATGCTCGTTCTTGCAAGTGTCTTTCCTCCCTCC
CTTTCCTCCCTCCGTCCCACCAGAATCAGCTTCCACTCCTGAATCACTCT
CACGTCCTCGCGGCGATACCCTTCATATCCCTTCTGACCTTCAAATTCCC
TTCTCCTTCTCTTTTTCCAAACACCATTCACGAAAACGTATGTAGGTGGG
TGATGTCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGA
AGCTGTCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCC
AAGGACGACACGCCCGGGTGCACCAAGGGTAAGTCACGAAATAAAAGGGA
GAAAGGAGATAGCTGTTAAGCGTGGACTGGAGTAGGTGTGCGAGTGCAAG
GGAGGTGGAGTGTGTGACACACGAGGCGTTTGGTCGAGTTCTGTCACCTC
CCCACACGGACACACACCCACACTTAAAGAAGACAATCTGTATTACCCAT
TCACATTCCTTTCTCTGCACCTCTCTCCCCATCCCCACCATGACTACAGA
GGCCAAGGCTTTCAATGCCGCGCTGGCTGACTTCAAGAAGAAAGGCGCCG
AGGTGTTTGGCATCTCCAGTGTACGTACTTCTGCTGCCATAACGGCAAAG
AACCAGAGGGGGGTCGCGAGGGGACGAGAAAGTAGAGAGATTTCTTTCGT
CAAGTCTAGAGTCAATTCAATGATTAAAGTCGCAGAGTCGTCAAGGAATG
TCGTCAAGGGTGACCTGAATTCAAAATCTGTGTATTCATTTCAAAACCGT
GTGCATCCATTCTCTCTCCTCATTCGCCCTCCCATCCTCCGTTTCCCCCC
CTCCCCCATCGCAGGACCAGGATCACTCCGCCTTCGTCGAGAAATACGGC
CTGCAAATGCAGCTCCTCTCGGACGTGGGTGGGGCCACCCGCAAGGCCTA
CAAGGTACCTACCTCCCTCTTCGGCGCGCTGGAGGGACGTGTGACTTACG
TGATTGGCAAGGACCAGACCGTCAAGCTGATGTACGACAACCAATTCGCC
CCTGAGAGCCATGTGGAGAAGTCACTCATGGCCTTGGTCTAAACGTTCCA
TTTAAAATTTTGAATTATGTGTGTTAGTGAATGTTGGAGGTGTGGGGTGT
GGGGAGAGCGGGAAGTGTTGATCAGTGGTACTTGATTTGATTTGCGTGAG
CGGACAGGAGGAACAAAAGATGTCCCGTGAAAGGGCAAAGAGAGAAGATG
AGAAATACATCTATAGAAACAAGCTAGCAGCCAATGCGA
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Coding sequence (CDS) from alignment at scaffold_5:69689..71277-

>mRNA_2331 ID=mRNA_2331|Name=jgi.p|Nanoce1779_2|579988|organism=Nannochloropsis oceanica|type=CDS|length=2160bp|location=Sequence derived from alignment at scaffold_5:69689..71277- (Nannochloropsis oceanica)
GACCAGGATCACTCCGCCTTCGTCGAGAAATACGGCCTGCAAATGCAGCT
CCTCTCGGACGTGGGTGGGGCCACCCGCAAGGCCTACAAGGTACCTACCT
CCCTCTTCGGCGCGCTGGAGGGACGTGTGACTTACGTGATTGGCAAGGAC
CAGACCGTCAAGCTGATGTACGACAACCAATTCGCCCCTGAGAGCCATGT
GGAGAAGTCACTCATGGCCTTGGTCTAAAGGCCAAGGCTTTCAATGCCGC
GCTGGCTGACTTCAAGAAGAAAGGCGCCGAGGTGTTTGGCATCTCCAGTG
TGGGTGATGTCGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATA
GTGAAGCTGTCTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTA
CCCCAAGGACGACACGCCCGGGTGCACCAAGGATGCGCGTGATTTCCGTC
CTCGCCATCTCTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCAC
ACCCGTGACCCGCAGCCGCGGTGCCTTATCCATGGTCAAAGACCAGGATC
ACTCCGCCTTCGTCGAGAAATACGGCCTGCAAATGCAGCTCCTCTCGGAC
GTGGGTGGGGCCACCCGCAAGGCCTACAAGGTACCTACCTCCCTCTTCGG
CGCGCTGGAGGGACGTGTGACTTACGTGATTGGCAAGGACCAGACCGTCA
AGCTGATGTACGACAACCAATTCGCCCCTGAGAGCCATGTGGAGAAGTCA
CTCATGGCCTTGGTCTAAAGGCCAAGGCTTTCAATGCCGCGCTGGCTGAC
TTCAAGAAGAAAGGCGCCGAGGTGTTTGGCATCTCCAGTGTGGGTGATGT
CGCACCGGACTTCTCTCTCAAGGATCAAAATAATAAGATAGTGAAGCTGT
CTTCCTTCAAGGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCCAAGGAC
GACACGCCCGGGTGCACCAAGGATGCGCGTGATTTCCGTCCTCGCCATCT
CTTTCTTGGCCGCCGCCCAGGCGTTCATGCCCACGGCCACACCCGTGACC
CGCAGCCGCGGTGCCTTATCCATGGTCAAAGACCAGGATCACTCCGCCTT
CGTCGAGAAATACGGCCTGCAAATGCAGCTCCTCTCGGACGTGGGTGGGG
CCACCCGCAAGGCCTACAAGGTACCTACCTCCCTCTTCGGCGCGCTGGAG
GGACGTGTGACTTACGTGATTGGCAAGGACCAGACCGTCAAGCTGATGTA
CGACAACCAATTCGCCCCTGAGAGCCATGTGGAGAAGTCACTCATGGCCT
TGGTCTAAAGGCCAAGGCTTTCAATGCCGCGCTGGCTGACTTCAAGAAGA
AAGGCGCCGAGGTGTTTGGCATCTCCAGTGTGGGTGATGTCGCACCGGAC
TTCTCTCTCAAGGATCAAAATAATAAGATAGTGAAGCTGTCTTCCTTCAA
GGGCAAGAAGCCCGTCGTCCTCTTCTTCTACCCCAAGGACGACACGCCCG
GGTGCACCAAGGATGCGCGTGATTTCCGTCCTCGCCATCTCTTTCTTGGC
CGCCGCCCAGGCGTTCATGCCCACGGCCACACCCGTGACCCGCAGCCGCG
GTGCCTTATCCATGGTCAAAGACCAGGATCACTCCGCCTTCGTCGAGAAA
TACGGCCTGCAAATGCAGCTCCTCTCGGACGTGGGTGGGGCCACCCGCAA
GGCCTACAAGGTACCTACCTCCCTCTTCGGCGCGCTGGAGGGACGTGTGA
CTTACGTGATTGGCAAGGACCAGACCGTCAAGCTGATGTACGACAACCAA
TTCGCCCCTGAGAGCCATGTGGAGAAGTCACTCATGGCCTTGGTCTAAAG
GCCAAGGCTTTCAATGCCGCGCTGGCTGACTTCAAGAAGAAAGGCGCCGA
GGTGTTTGGCATCTCCAGTGTGGGTGATGTCGCACCGGACTTCTCTCTCA
AGGATCAAAATAATAAGATAGTGAAGCTGTCTTCCTTCAAGGGCAAGAAG
CCCGTCGTCCTCTTCTTCTACCCCAAGGACGACACGCCCGGGTGCACCAA
GGATGCGCGTGATTTCCGTCCTCGCCATCTCTTTCTTGGCCGCCGCCCAG
GCGTTCATGCCCACGGCCACACCCGTGACCCGCAGCCGCGGTGCCTTATC
CATGGTCAAA
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Synonyms
Publications