jgi.p|Nanoce1779_2|579986, mRNA_2330 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579986
Unique NamemRNA_2330
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length936
Alignment locationscaffold_5:68661..69596 +

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Properties
Property NameValue
TranscriptId580072
TrackFilteredModels2
ProteinId579986
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:68661..69596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579986gene_2330Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579986mRNA_2330-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2330CDS_2330Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2330 ID=mRNA_2330|Name=jgi.p|Nanoce1779_2|579986|organism=Nannochloropsis oceanica|type=mRNA|length=936bp
AGTATGTGCACTTTACCATGTTCCTGGTCATTTTATTTTAATTAACACAT
CGCTCACTCCTGTGTATGGGCTAACTAGCTCAATTAAGTGACACGTGTAA
TCCTCAATATCAGAACACGAGAAAATGGAGAGCATCGAAATGGGTGTAGT
AGGATAGCTGAGGCGTAGGTGTTGCAAGGAAAGGTTGTCACTTCGTCGTT
GCCGAATCAATCGTACGTGCCAAGGCGAGAGAGCATCATCAAGCCTCTGC
TCCTATCCACCAAACATGCCACACACATACAGCATCCCTTCCCAGAAAGA
TCTCTTGGCGTCAGGACCAGCACTTTATATTCCATCTGTTCGCACCCTAC
ATTCCTGCCTGTCGCATCGCCTTATCATGAGCGGAACCAGCGCTTCTTCA
CGTGCAGCGCCTTCTGTCTCCGCGTCGTCCCCTCGTCCCACGGCCCCTGC
ACCGACCACCACTCGCCGTGTGCCCGCCACGACCACAGCCGGGGCATTTT
CTTCCGTACCAGGAACCACTTCAGCCGCCGGGCGCAGCACCACGAGCTTG
CGCACCCCTCCCATCCGCGGTGCAGGCACAAGCACTACGAGGCGGACGCC
AATAACAACACAACAAGGCGGCACACCTTCTTCATTGGGCGCCGCGCGAC
GGGTACCACGCAGTATAGGCGAGGAGGAGAGCGAGCTCATGCTTGACGAC
AATGGCGAGGAAGAAGTACGGCCAGTTCGTCGATTCCACCTACCGAATGA
AACCCAACCACCAGACCACACCGAAAAATGGATTGCTCTTGCGAAGCAAA
CGACGGTGGATGCGGCCTTTGTAGCAGCGATGGACCGATCGATGGTGGAA
GAGGTTTGTGAGAATCTGAAAGAGGTGGCGAAATCCCTGGAGGAGGACAG
ATGGATGTATGAATGAATGATGGAAGGAAGGGAGGG
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protein sequence of jgi.p|Nanoce1779_2|579986

>mRNA_2330-protein ID=mRNA_2330-protein|Name=jgi.p|Nanoce1779_2|579986|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MPHTYSIPSQKDLLASGPALYIPSVRTLHSCLSHRLIMSGTSASSRAAPS
VSASSPRPTAPAPTTTRRVPATTTAGAFSSVPGTTSAAGRSTTSLRTPPI
RGAGTSTTRRTPITTQQGGTPSSLGAARRVPRSIGEEESELMLDDNGEEE
VRPVRRFHLPNETQPPDHTEKWIALAKQTTVDAAFVAAMDRSMVEEVCEN
LKEVAKSLEEDRWMYE*
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mRNA from alignment at scaffold_5:68661..69596+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2330 ID=mRNA_2330|Name=jgi.p|Nanoce1779_2|579986|organism=Nannochloropsis oceanica|type=mRNA|length=936bp|location=Sequence derived from alignment at scaffold_5:68661..69596+ (Nannochloropsis oceanica)
AGTATGTGCACTTTACCATGTTCCTGGTCATTTTATTTTAATTAACACAT
CGCTCACTCCTGTGTATGGGCTAACTAGCTCAATTAAGTGACACGTGTAA
TCCTCAATATCAGAACACGAGAAAATGGAGAGCATCGAAATGGGTGTAGT
AGGATAGCTGAGGCGTAGGTGTTGCAAGGAAAGGTTGTCACTTCGTCGTT
GCCGAATCAATCGTACGTGCCAAGGCGAGAGAGCATCATCAAGCCTCTGC
TCCTATCCACCAAACATGCCACACACATACAGCATCCCTTCCCAGAAAGA
TCTCTTGGCGTCAGGACCAGCACTTTATATTCCATCTGTTCGCACCCTAC
ATTCCTGCCTGTCGCATCGCCTTATCATGAGCGGAACCAGCGCTTCTTCA
CGTGCAGCGCCTTCTGTCTCCGCGTCGTCCCCTCGTCCCACGGCCCCTGC
ACCGACCACCACTCGCCGTGTGCCCGCCACGACCACAGCCGGGGCATTTT
CTTCCGTACCAGGAACCACTTCAGCCGCCGGGCGCAGCACCACGAGCTTG
CGCACCCCTCCCATCCGCGGTGCAGGCACAAGCACTACGAGGCGGACGCC
AATAACAACACAACAAGGCGGCACACCTTCTTCATTGGGCGCCGCGCGAC
GGGTACCACGCAGTATAGGCGAGGAGGAGAGCGAGCTCATGCTTGACGAC
AATGGCGAGGAAGAAGTACGGCCAGTTCGTCGATTCCACCTACCGAATGA
AACCCAACCACCAGACCACACCGAAAAATGGATTGCTCTTGCGAAGCAAA
CGACGGTGGATGCGGCCTTTGTAGCAGCGATGGACCGATCGATGGTGGAA
GAGGTTTGTGAGAATCTGAAAGAGGTGGCGAAATCCCTGGAGGAGGACAG
ATGGATGTATGAATGAATGATGGAAGGAAGGGAGGG
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Coding sequence (CDS) from alignment at scaffold_5:68661..69596+

>mRNA_2330 ID=mRNA_2330|Name=jgi.p|Nanoce1779_2|579986|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_5:68661..69596+ (Nannochloropsis oceanica)
ATGCCACACACATACAGCATCCCTTCCCAGAAAGATCTCTTGGCGTCAGG
ACCAGCACTTTATATTCCATCTGTTCGCACCCTACATTCCTGCCTGTCGC
ATCGCCTTATCATGAGCGGAACCAGCGCTTCTTCACGTGCAGCGCCTTCT
GTCTCCGCGTCGTCCCCTCGTCCCACGGCCCCTGCACCGACCACCACTCG
CCGTGTGCCCGCCACGACCACAGCCGGGGCATTTTCTTCCGTACCAGGAA
CCACTTCAGCCGCCGGGCGCAGCACCACGAGCTTGCGCACCCCTCCCATC
CGCGGTGCAGGCACAAGCACTACGAGGCGGACGCCAATAACAACACAACA
AGGCGGCACACCTTCTTCATTGGGCGCCGCGCGACGGGTACCACGCAGTA
TAGGCGAGGAGGAGAGCGAGCTCATGCTTGACGACAATGGCGAGGAAGAA
GTACGGCCAGTTCGTCGATTCCACCTACCGAATGAAACCCAACCACCAGA
CCACACCGAAAAATGGATTGCTCTTGCGAAGCAAACGACGGTGGATGCGG
CCTTTGTAGCAGCGATGGACCGATCGATGGTGGAAGAGGTTTGTGAGAAT
CTGAAAGAGGTGGCGAAATCCCTGGAGGAGGACAGATGGATGTATGAATG
A
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Synonyms
Publications