jgi.p|Nanoce1779_2|576623, mRNA_233 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576623
Unique Name	mRNA_233
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1577
Alignment location	scaffold_3:582122..583802 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576709
Track	FilteredModels2
ProteinId	576623

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:582122..583802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576623	gene_233	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576623	mRNA_233-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_233	CDS_233	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:582122..583802+
coding sequence from alignment at scaffold_3:582122..583802+

mRNA sequence

>mRNA_233 ID=mRNA_233|Name=jgi.p|Nanoce1779_2|576623|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp
ACAGTTCAACTCTTGCATATCTCTCTCCATACACTTCGTGCCGATGCCTC
ACCTGCCGCGTCTCGTTGCCGTTTTCATTGTTATTATCGTCCCGTCGTAC
GTGTCCGGAGCGGCTATCGCCCTCACGAAAAATGTGGAGGAGACGCCAAT
CGTCACCTCTGTTTGCCCGAGCTTTAGCCGCCCTGTGGAGCCCTGTACCT
CCGTGTGGAACATGAAGCCGTCGCAAGTGGACGTGGTGCTGGCTCTCGGG
GATTCCATCACTGCAGCCTTTGGAGCCAAAGGGCGACACAGCGGCTTCCA
TGAAGCTAGGGGCTTGAGCTGGAGCATTGGCGGCGATGCGGGGGCCAGGA
CCTTGCCAAATTTCATCAAGAAGCACAATCCAAATCTTACTGGCTACTCC
ATGGGCTCGCGGGAAACCTCTCTATGTTGGGGCCCCGTTTGCCGAGATAT
TCATCGACAGAGGCATGATCGACTCAACGGTGCGCTCAGCGGCTCAACAA
TACGAAATGTGTGGTTCGACCAACTTGACTACCTGGAGGAGCAGCTCGTC
TCCCAGGGCATAGATGAAGAGAGCTGGAAAGTGCTTACTTTATTTGTGGG
TGCGAATGACCTTTGTATTTGCTGTAAGCTTCCGAAAAGGACCGACGCCA
TAGAGTATTCTGAAACATTTCGACGAATCCTCCTTGCAATTCGGGATCGC
TTTCCGCGGACTCTAGTCAATGTCGTAGAGATGTTTAATGTCTCAGCCAT
TTACTGCGCTACAGAGAACAAGTCGTATTGCAAGGACGTCCACCGGCTCA
TTTTTCTGGAATGCGATTGTGCATTCAAAGGGTCAGAATCGGCCTCCGAA
CCCTACAGAAAGCTTATGGATGAATTATCACAGGAATACAATAAACAAAT
GAGAAGCGTGATCCGGGATCTATCGAAGGTCAAGAATGATACGTGGGCAA
TCGCCCTTCACTCCTTTACTCGGGACCTTAACATCACCTCCTTCCCTATG
GAAATGATTTCGGATCTGGATTGCTTCCACCCATCGGAAAAGAGCCATGC
TTTGATCGCCACAGCACTTTGGAACTCGATGCTCACTCCTCCGCAGCACC
GAGACACCACAATTCCCTCGCTGGACTTGCAGCCCCTTTGCGCGGGAGAG
GAGAGTGTGTTTTACCCCGGCTATCCTCCGGACGAGGACGAGGAGGTCGG
GATTGAGGAAGAAAGGATGGTGGGCTTGATCAATACGGGCAAGATGCTGC
GCGAGGCTTGAAGGACATCAGAGGAGTGGGACGATGTAAAGGTATGGCAT
ACGGGGCAACTGCTGGTGGGAGGCGCCAACTGCAATCAACACTGACGGAT
CGATATGGATACGGGGGACGAAAAGTAGCAATTCTGAGGAGACAGGTCTC
CTGATCTCGGAGTTCTGATTGTGCAAAGACGGAAGGGGTCCTAGAAAAAA
TGCATATACAAGTTTGTCCACGTGTATGTTGTGTCATGACGAAACACGCA
AAGTCAAAAAGATTTTGTGAGAAAAGGCTCGCTTGGAACGGGTCACACGA
AAAGAAAAGAGTACTATTCAAGGCAAT

protein sequence of jgi.p|Nanoce1779_2|576623

>mRNA_233-protein ID=mRNA_233-protein|Name=jgi.p|Nanoce1779_2|576623|organism=Nannochloropsis oceanica|type=polypeptide|length=406bp
MPHLPRLVAVFIVIIVPSYVSGAAIALTKNVEETPIVTSVCPSFSRPVEP
CTSVWNMKPSQVDVVLALGDSITAAFGAKGRHSGFHEARGLSWSIGGDAG
ARTLPNFIKKHNPNLTGYSMGSRETSLCWGPVCRDIHRQRHDRLNGALSG
STIRNVWFDQLDYLEEQLVSQGIDEESWKVLTLFVGANDLCICCKLPKRT
DAIEYSETFRRILLAIRDRFPRTLVNVVEMFNVSAIYCATENKSYCKDVH
RLIFLECDCAFKGSESASEPYRKLMDELSQEYNKQMRSVIRDLSKVKNDT
WAIALHSFTRDLNITSFPMEMISDLDCFHPSEKSHALIATALWNSMLTPP
QHRDTTIPSLDLQPLCAGEESVFYPGYPPDEDEEVGIEEERMVGLINTGK
MLREA*

mRNA from alignment at scaffold_3:582122..583802+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_233 ID=mRNA_233|Name=jgi.p|Nanoce1779_2|576623|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at scaffold_3:582122..583802+ (Nannochloropsis oceanica)
ACAGTTCAACTCTTGCATATCTCTCTCCATACACTTCGTGCCGATGCCTC
ACCTGCCGCGTCTCGTTGCCGTTTTCATTGTTATTATCGTCCCGTCGTAC
GTGTCCGGAGCGGCTATCGCCCTCACGAAAAATGTGGAGGAGACGCCAAT
CGTCACCTCTGTTTGCCCGAGCTTTAGCCGCCCTGTGGAGCCCTGTACCT
CCGTGTGGAACATGAAGCCGTCGCAAGTGGACGTGGTGCTGGCTCTCGGG
GATTCCATCACTGCAGCCTTTGGAGCCAAAGGGCGACACAGCGGCTTCCA
TGAAGCTAGGGGCTTGAGCTGGAGCATTGGCGGCGATGCGGGGGCCAGGA
CCTTGCCAAATTTCATCAAGAAGCACAATCCAAATCTTACTGGCTACTCC
ATGGGCTCGCGGGAAACCTCTCTATGTTGGGGCCCCGTTTGCCGAGATAT
TCATCGACAGAGGCATGATCGACTCAACGGTGCGCTCAGCGGCTCAACAA
TACGAAATGTGTGGTTCGACCAACTTGACTACCTGGAGGAGCAGCTCGTC
TCCCAGGGCATAGATGAAGAGAGCTGGAAAGTGCTTACTTTATTTGTGGG
TGCGAATGACCTTTGTATTTGCTGTAAGCTTCCGAAAAGGACCGACGCCA
TAGAGTATTCTGAAACATTTCGACGAATCCTCCTTGCAATTCGGGATCGC
TTTCCGCGGACTCTAGTCAATGTCGTAGAGATGTTTAATGTCTCAGCCAT
TTACTGCGCTACAGAGAACAAGTCGTATTGCAAGGACGTCCACCGGCTCA
TTTTTCTGGAATGCGATTGTGCATTCAAAGGGTCAGAATCGGCCTCCGAA
CCCTACAGAAAGCTTATGGATGAATTATCACAGGAATACAATAAACAAAT
GAGAAGCGTGATCCGGGATCTATCGAAGGTCAAGAATGATACGTGGGCAA
TCGCCCTTCACTCCTTTACTCGGGACCTTAACATCACCTCCTTCCCTATG
GAAATGATTTCGGTAAGCTATGAATTGAACATTGGATTTGCTGTAAATGT
ACACAATGACTTTTGACCTGCCTTTTTTTTCAATTTTCACCTGCCCAACG
ATTTTGTTGGGCTTAGGATCTGGATTGCTTCCACCCATCGGAAAAGAGCC
ATGCTTTGATCGCCACAGCACTTTGGAACTCGATGCTCACTCCTCCGCAG
CACCGAGACACCACAATTCCCTCGCTGGACTTGCAGCCCCTTTGCGCGGG
AGAGGAGAGTGTGTTTTACCCCGGCTATCCTCCGGACGAGGACGAGGAGG
TCGGGATTGAGGAAGAAAGGATGGTGGGCTTGATCAATACGGGCAAGATG
CTGCGCGAGGCTTGAAGGACATCAGAGGAGTGGGACGATGTAAAGGTATG
GCATACGGGGCAACTGCTGGTGGGAGGCGCCAACTGCAATCAACACTGAC
GGATCGATATGGATACGGGGGACGAAAAGTAGCAATTCTGAGGAGACAGG
TCTCCTGATCTCGGAGTTCTGATTGTGCAAAGACGGAAGGGGTCCTAGAA
AAAATGCATATACAAGTTTGTCCACGTGTATGTTGTGTCATGACGAAACA
CGCAAAGTCAAAAAGATTTTGTGAGAAAAGGCTCGCTTGGAACGGGTCAC
ACGAAAAGAAAAGAGTACTATTCAAGGCAAT

Coding sequence (CDS) from alignment at scaffold_3:582122..583802+

>mRNA_233 ID=mRNA_233|Name=jgi.p|Nanoce1779_2|576623|organism=Nannochloropsis oceanica|type=CDS|length=2436bp|location=Sequence derived from alignment at scaffold_3:582122..583802+ (Nannochloropsis oceanica)
ATGCCTCACCTGCCGCGTCTCGTTGCCGTTTTCATTGTTATTATCGTCCC
GTCGTACGTGTCCGGAGCGGCTATCGCCCTCACGAAAAATGTGGAGGAGA
CGCCAATCGTCACCTCTGTTTGCCCGAGCTTTAGCCGCCCTGTGGAGCCC
TGTACCTCCGTGTGGAACATGAAGCCGTCGCAAGTGGACGTGGTGCTGGC
TCTCGGGGATTCCATCACTGCAGCCTTTGGAGCCAAAGGGCGACACAGCG
GCTTCCATGAAGCTAGGGGCTTGAGCTGGAGCATTGGCGGCGATGCGGGG
GCCAGGACCTTGCCAAATTTCATCAAGAAGCACAATCCAAATCTTACTGG
CTACTCCATGGGCTCGCGGGAAACCTCTCTATGTTGGGGCCCCGTTTGCC
GAGATATTCATCGACAGAGGCATGATCGACTCAACGGTGCGCTCAGCGGC
TCAACAATACGAAATGTGTGGTTCGACCAACTTGACTACCTGGAGGAGCA
GCTCGTCTCCCAGGGCATAGATGAAGAGAGCTGGAAAGTGCTTACTTTAT
TTGTGGGTGCGAATGACCTTTGTATTTGCTGTAAGCTTCCGAAAAGGACC
GACGCCATAGAGTATTCTGAAACATTTCGACGAATCCTCCTTGCAATTCG
GGATCGCTTTCCGCGGACTCTAGTCAATGTCGTAGAGATGTTTAATGTCT
CAGCCATTTACTGCGCTACAGAGAACAAGTCGTATTGCAAGGACGTCCAC
CGGCTCATTTTTCTGGAATGCGATTGTGCATTCAAAGGGTCAGAATCGGC
CTCCGAACCCTACAGAAAGCTTATGGATGAATTATCACAGGAATACAATA
AACAAATGAGAAGCGTGATCCGGGATCTATCGAAGGTCAAGAATGATACG
TGGGCAATCGCCCTTCACTCCTTTACTCGGGACCTTAACATCACCTCCTT
CCCTATGGAAATGATTTCGGATCTGGATTGCTTCCACCCATCGGAAAAGA
GCCATGCTTTGATCGCCACAGCACTTTGGAACTCGATGCTCACTCCTCCG
CAGCACCGAGACACCACAATTCCCTCGCTGGACTTGCAGCCCCTTTGCGC
GGGAGAGGAGAGTGTGTTTTACCCCGGCTATCCTCCGGACGAGGACGAGG
AGGTCGGGATTGAGGAAGAAAGGATGGTGGGCTTGATCAATACGGGCAAG
ATGCTGCGCGAGGCTTGAATGCCTCACCTGCCGCGTCTCGTTGCCGTTTT
CATTGTTATTATCGTCCCGTCGTACGTGTCCGGAGCGGCTATCGCCCTCA
CGAAAAATGTGGAGGAGACGCCAATCGTCACCTCTGTTTGCCCGAGCTTT
AGCCGCCCTGTGGAGCCCTGTACCTCCGTGTGGAACATGAAGCCGTCGCA
AGTGGACGTGGTGCTGGCTCTCGGGGATTCCATCACTGCAGCCTTTGGAG
CCAAAGGGCGACACAGCGGCTTCCATGAAGCTAGGGGCTTGAGCTGGAGC
ATTGGCGGCGATGCGGGGGCCAGGACCTTGCCAAATTTCATCAAGAAGCA
CAATCCAAATCTTACTGGCTACTCCATGGGCTCGCGGGAAACCTCTCTAT
GTTGGGGCCCCGTTTGCCGAGATATTCATCGACAGAGGCATGATCGACTC
AACGGTGCGCTCAGCGGCTCAACAATACGAAATGTGTGGTTCGACCAACT
TGACTACCTGGAGGAGCAGCTCGTCTCCCAGGGCATAGATGAAGAGAGCT
GGAAAGTGCTTACTTTATTTGTGGGTGCGAATGACCTTTGTATTTGCTGT
AAGCTTCCGAAAAGGACCGACGCCATAGAGTATTCTGAAACATTTCGACG
AATCCTCCTTGCAATTCGGGATCGCTTTCCGCGGACTCTAGTCAATGTCG
TAGAGATGTTTAATGTCTCAGCCATTTACTGCGCTACAGAGAACAAGTCG
TATTGCAAGGACGTCCACCGGCTCATTTTTCTGGAATGCGATTGTGCATT
CAAAGGGTCAGAATCGGCCTCCGAACCCTACAGAAAGCTTATGGATGAAT
TATCACAGGAATACAATAAACAAATGAGAAGCGTGATCCGGGATCTATCG
AAGGTCAAGAATGATACGTGGGCAATCGCCCTTCACTCCTTTACTCGGGA
CCTTAACATCACCTCCTTCCCTATGGAAATGATTTCGGATCTGGATTGCT
TCCACCCATCGGAAAAGAGCCATGCTTTGATCGCCACAGCACTTTGGAAC
TCGATGCTCACTCCTCCGCAGCACCGAGACACCACAATTCCCTCGCTGGA
CTTGCAGCCCCTTTGCGCGGGAGAGGAGAGTGTGTTTTACCCCGGCTATC
CTCCGGACGAGGACGAGGAGGTCGGGATTGAGGAAGAAAGGATGGTGGGC
TTGATCAATACGGGCAAGATGCTGCGCGAGGCTTGA

Synonyms

Publications