jgi.p|Nanoce1779_2|579954, mRNA_2323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579954
Unique NamemRNA_2323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length944
Alignment locationscaffold_5:42412..43355 +

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Properties
Property NameValue
TranscriptId580040
TrackFilteredModels2
ProteinId579954
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:42412..43355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579954gene_2323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579954mRNA_2323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2323CDS_2323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2323 ID=mRNA_2323|Name=jgi.p|Nanoce1779_2|579954|organism=Nannochloropsis oceanica|type=mRNA|length=944bp
CCTGTAGACCGGCGCACTCTTTCCACGTTATGTCTTTTTCATCGTTTCCT
CCCTCCCTTCCTTCCCCCCTCTCTTCTCCCCTCAGTGTGGACCAAGCCAC
CGACCAGCTCATCCAGGAAACGATTCGCCGGGAGTTTGTCGACTGCACCG
TCTTGACGATCGCCCACAGGTTAGAAGGGAGGGAAGAATGAAGAGAAGGA
AGTGACCATGAAGGTCGGTTAGAACCGCACACCTGAGCAAGAATCACGGC
TACATGTAATGGATGGCACGTGCCTCCCTACCCACTCATTCATCCGACTC
TCGTCCCTTTCACCCTACCACCTGCCCTCCATTTGCCTCGTGAAGGTTGG
AAACCATCTTGGACTCGGACCGGATCTTGGTCATGAGGAATGGCCGCCTG
GTAGAGTTCGACCGACCCCACGTCCTCTTGAACAGATCCAATTCCCTGTT
CGCCGAGCTCGTGCGAAGTGCCGAGCTCGAGGGAGGGGTGGAGGGGCCTG
CGGTTGCCTCAGTGGCAGCATCATCATCATCAGCAGCAACGGACGCAAAA
TCGAGTACCGCATCGACGCCCTCGATGCCCATGCCGGCACCCGCGTAAAA
GGCTGGGAGGATGAAGGAGGGAGGGAGGATGGAGTCTTGTATAAAAGCAG
CAGCAACAGCTACCGAAGCAGTAGCAGCAGCGGAGTAAGCGATGGAAAGA
AAAAGCCAAGTACCCCAGACGACGACAACGGCTTTGACTGGGTGCATGGA
GGCGTGCGAGGGTGAAGGATGAGTAGAGGAGAACAGAGAGGAATAGTGGA
GTGAGATTTAAACCAGCTGACGTGCTAAACACGCAGTCGAAATTACACAA
GGAAACAATCGAGAAGTGCTCGTTGAAGCGGTACAAGATGTTGACAAGGC
AAAGGCAGTGCCATAACTAAATGCCAAATTCGCTGCTGCCTCTG
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protein sequence of jgi.p|Nanoce1779_2|579954

>mRNA_2323-protein ID=mRNA_2323-protein|Name=jgi.p|Nanoce1779_2|579954|organism=Nannochloropsis oceanica|type=polypeptide|length=169bp
MDGTCLPTHSFIRLSSLSPYHLPSICLVKVGNHLGLGPDLGHEEWPPGRV
RPTPRPLEQIQFPVRRARAKCRARGRGGGACGCLSGSIIIISSNGRKIEY
RIDALDAHAGTRVKGWEDEGGREDGVLYKSSSNSYRSSSSSGVSDGKKKP
STPDDDNGFDWVHGGVRG*
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mRNA from alignment at scaffold_5:42412..43355+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2323 ID=mRNA_2323|Name=jgi.p|Nanoce1779_2|579954|organism=Nannochloropsis oceanica|type=mRNA|length=944bp|location=Sequence derived from alignment at scaffold_5:42412..43355+ (Nannochloropsis oceanica)
CCTGTAGACCGGCGCACTCTTTCCACGTTATGTCTTTTTCATCGTTTCCT
CCCTCCCTTCCTTCCCCCCTCTCTTCTCCCCTCAGTGTGGACCAAGCCAC
CGACCAGCTCATCCAGGAAACGATTCGCCGGGAGTTTGTCGACTGCACCG
TCTTGACGATCGCCCACAGGTTAGAAGGGAGGGAAGAATGAAGAGAAGGA
AGTGACCATGAAGGTCGGTTAGAACCGCACACCTGAGCAAGAATCACGGC
TACATGTAATGGATGGCACGTGCCTCCCTACCCACTCATTCATCCGACTC
TCGTCCCTTTCACCCTACCACCTGCCCTCCATTTGCCTCGTGAAGGTTGG
AAACCATCTTGGACTCGGACCGGATCTTGGTCATGAGGAATGGCCGCCTG
GTAGAGTTCGACCGACCCCACGTCCTCTTGAACAGATCCAATTCCCTGTT
CGCCGAGCTCGTGCGAAGTGCCGAGCTCGAGGGAGGGGTGGAGGGGCCTG
CGGTTGCCTCAGTGGCAGCATCATCATCATCAGCAGCAACGGACGCAAAA
TCGAGTACCGCATCGACGCCCTCGATGCCCATGCCGGCACCCGCGTAAAA
GGCTGGGAGGATGAAGGAGGGAGGGAGGATGGAGTCTTGTATAAAAGCAG
CAGCAACAGCTACCGAAGCAGTAGCAGCAGCGGAGTAAGCGATGGAAAGA
AAAAGCCAAGTACCCCAGACGACGACAACGGCTTTGACTGGGTGCATGGA
GGCGTGCGAGGGTGAAGGATGAGTAGAGGAGAACAGAGAGGAATAGTGGA
GTGAGATTTAAACCAGCTGACGTGCTAAACACGCAGTCGAAATTACACAA
GGAAACAATCGAGAAGTGCTCGTTGAAGCGGTACAAGATGTTGACAAGGC
AAAGGCAGTGCCATAACTAAATGCCAAATTCGCTGCTGCCTCTG
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Coding sequence (CDS) from alignment at scaffold_5:42412..43355+

>mRNA_2323 ID=mRNA_2323|Name=jgi.p|Nanoce1779_2|579954|organism=Nannochloropsis oceanica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_5:42412..43355+ (Nannochloropsis oceanica)
ATGGATGGCACGTGCCTCCCTACCCACTCATTCATCCGACTCTCGTCCCT
TTCACCCTACCACCTGCCCTCCATTTGCCTCGTGAAGGTTGGAAACCATC
TTGGACTCGGACCGGATCTTGGTCATGAGGAATGGCCGCCTGGTAGAGTT
CGACCGACCCCACGTCCTCTTGAACAGATCCAATTCCCTGTTCGCCGAGC
TCGTGCGAAGTGCCGAGCTCGAGGGAGGGGTGGAGGGGCCTGCGGTTGCC
TCAGTGGCAGCATCATCATCATCAGCAGCAACGGACGCAAAATCGAGTAC
CGCATCGACGCCCTCGATGCCCATGCCGGCACCCGCGTAAAAGGCTGGGA
GGATGAAGGAGGGAGGGAGGATGGAGTCTTGTATAAAAGCAGCAGCAACA
GCTACCGAAGCAGTAGCAGCAGCGGAGTAAGCGATGGAAAGAAAAAGCCA
AGTACCCCAGACGACGACAACGGCTTTGACTGGGTGCATGGAGGCGTGCG
AGGGTGA
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Synonyms
Publications