jgi.p|Nanoce1779_2|579931, mRNA_2321 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579931
Unique Name	mRNA_2321
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2512
Alignment location	scaffold_5:24202..26991 -

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Properties


Property Name	Value
TranscriptId	580017
Track	FilteredModels2
ProteinId	579931

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:24202..26991 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579931	gene_2321	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579931	mRNA_2321-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2321	CDS_2321	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:24202..26991-
coding sequence from alignment at scaffold_5:24202..26991-

mRNA sequence

>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Nanoce1779_2|579931|organism=Nannochloropsis oceanica|type=mRNA|length=2512bp
CCTCTTTATCTCCTATCCTCGAGTTTGTCCACATTTTCATCCAAATTTGC
CCCCTTCTGGTCTCTGACAGATAGTATTGCGGACGAAGGCTCAAACTCTA
CGCCACTAGGCATGATGACGTTTTCAGCCACAGCATGTAATCATGCTCAT
GCCCGATTCTCATCCCAACGCCGTCAATTTGCTCTGAATATTTTCTCCTA
CTAAGGCCAACAAAAACAACATCCCCTCTTCCTTATTTTCATGATCACCC
ATCGAACGATGCTCATTGAAATTTTGTCGCCCTCTCCTCCTCTCCCCTTC
CTTTCCAGCAGGATGGCTCGAGATGAGGATGACAAGCGACCCCGTGGCGC
TCGAGCCATCATCTCTTGGTGCATGGCCTCTTCTTGGAGACGGGCTTTAT
TGGGTTGTACACTGGGGATATTTGCAATGGTCTGGTTTGTGACCCATCTG
GCAAGCAACATGGACGGGGGCAGTAGCGGAAGCAGCATGCTGAGTACGTC
CACAATCACCAACAGCAGAGACAAGAATGCCAACTTTACCCCTTCCACGG
CTTCATCTTTACCCCCTCACATCAAGGGCAATACCATCATGGCGGAGATG
CCCACAGTCGCTGCTATCCCTCTAAAGAGCGTGAAGAGCGAAGATGACGT
CTCTACCCTCGAGCACGCCTCCCCTTTGCTCCGCACCACTAAAGAGGGGG
GAAACACCCCCCAGCTACCATTTGTATCTGCGAAAAAAGATAATAATGAA
GGTGAAAGTCTCGGGAACAACGCCGTCATCACGACCATCACATCCATCGA
CAGCGGCGGCATCAGCAAGGGCAACGAGGACAACGGTGACACGGACTCCA
CTCTTGCGGACATTGAGAAGAAAGACAGTGCGACCTCTGAGACCGTAACC
ACTACTGCTAGCACGGCTGAGGCTGCTACAACAGCTTTCCCCCTCGTCTG
TCCCTATTACGACGACATACCTAGCCCGTTTCCCGCCTCTTTTTGGTACG
TCAAGAACCCCAAGACAGCCAGCAGCACACTTGGCGGCGTCTTCCGCAGT
GTAGCAGCCCACCACGGCGTGGAAATGCTCAACTCGGACGAAATACACAT
GGACTTACCCCAGCTTAAGCGTACCATCGCCGAGGTGCTGGCGGCCTTCG
GCAGTGCCGTGGCTCCCGATCCGCCTCTCGGGCTGGCCAACCACATGCCA
TTCGATATTAGTGCCCGCGACATTTTCAGAAAGACTGCGCCTGTGATGCT
GTTTACCTCGGTTCGTGAGCCTGTTGCTCAATTTCATTCGCACTTCGTGG
AGGTTTGCAAACAAGGGAAGAAGAGAAGAGAAAGTAGTAAATGTTTTGGC
CCGGCGGTACAGGAGCGGACGGCGATGGCGAATGCCATGGAACCCGACGC
TCAGTTTGCCTATATTCGCGGGGACGCATCTGATGCCGAGTCTGCTGCGG
CACAGTATGATTTTGTGTTTCTGCGGGAGCGCCTGGAGGAATCGTTGGTG
GCCTTTATGATCATGTACGGCCTGGACTTTGCCGACATTGCACATGTTGC
CGCCAAGGTGCGCACGGAATTATACCCTGGGCCGAGAGAGCTGCCTGAAG
AATTGAATGAACTGATTCGCACCAAGACAACCGAGGACGCTAAGCTCTGG
GCCAAGGCAAACATGATGCTGGATGAGAAAATTACTGCCATAAATGGCCA
CTGTGGTGGTAAGGCGTACTTTTCGTCAATGCTAACAGTTTTCCGGAAAT
TGCAAAAAGTGGTGATGCAGGAATGCACAGATTTTCGTGGTTGGTACAAG
AAGCATGGTTTTTCGACCGTGCTCCGGTATTGGGGCGACAATGGCCAGGC
ACCCCGATGCCGAGACTTTGTGGTTCGCCGTGAGATGCGTGCTTGGCAAA
AGCATCATGTGACGGAAATGCTCAGGGCCGCTATGGCTAAATCAAGAGGA
GGAAATACAGCGCCGATCTTGGAATCAAAAGGACCAGCAGTAAATGGCTG
GGGTCTACCAAAAGATGCATGATTGCCTTGACGATTTCGATGAAATCAGA
AAAAGGAGGGCAGTACGCAGGACAGTATGATAGCGTTTGTATATATATTA
TAAATGGGGCGCGATTGGTACTCTTTCTCCATTTGATTGGAAAGTGAAGT
GTACAGATTTAAACTTAAATAGAACCTCCAGATTCTTCAATTTTTTCCAA
AGAGGATTCACGGGGTCATCAAAACGGCTTCTCCAAGGCAGATAACCGTG
CGTTGGCCGGTCGTGGGGGCTTCAAGCGAATAAAAGACTATGGTCTGGCA
TGTATATGACCATAGCCTACCAGGTGACCCATGCTTTATAGTGGTCAGCA
TGACGAGAGTGGGCACCATTTCCATTCTGCGTTAGATAAGAAAGTGACAG
CGTGATTTGATCTGCTTACGCTATATATGGTACAAGCAGCAGTGTTATTA
GGTGTCATGCGATATGGTCTTAACAAAACAAATTGGATAAAATACAAGAT
GCAACAGAATGA

protein sequence of jgi.p|Nanoce1779_2|579931

>mRNA_2321-protein ID=mRNA_2321-protein|Name=jgi.p|Nanoce1779_2|579931|organism=Nannochloropsis oceanica|type=polypeptide|length=594bp
MITHRTMLIEILSPSPPLPFLSSRMARDEDDKRPRGARAIISWCMASSWR
RALLGCTLGIFAMVWFVTHLASNMDGGSSGSSMLSTSTITNSRDKNANFT
PSTASSLPPHIKGNTIMAEMPTVAAIPLKSVKSEDDVSTLEHASPLLRTT
KEGGNTPQLPFVSAKKDNNEGESLGNNAVITTITSIDSGGISKGNEDNGD
TDSTLADIEKKDSATSETVTTTASTAEAATTAFPLVCPYYDDIPSPFPAS
FWYVKNPKTASSTLGGVFRSVAAHHGVEMLNSDEIHMDLPQLKRTIAEVL
AAFGSAVAPDPPLGLANHMPFDISARDIFRKTAPVMLFTSVREPVAQFHS
HFVEVCKQGKKRRESSKCFGPAVQERTAMANAMEPDAQFAYIRGDASDAE
SAAAQYDFVFLRERLEESLVAFMIMYGLDFADIAHVAAKVRTELYPGPRE
LPEELNELIRTKTTEDAKLWAKANMMLDEKITAINGHCGGKAYFSSMLTV
FRKLQKVVMQECTDFRGWYKKHGFSTVLRYWGDNGQAPRCRDFVVRREMR
AWQKHHVTEMLRAAMAKSRGGNTAPILESKGPAVNGWGLPKDA*

mRNA from alignment at scaffold_5:24202..26991-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Nanoce1779_2|579931|organism=Nannochloropsis oceanica|type=mRNA|length=2790bp|location=Sequence derived from alignment at scaffold_5:24202..26991- (Nannochloropsis oceanica)
CCTCTTTATCTCCTATCCTCGAGTTTGTCCACATTTTCATCCAAATTTGC
CCCCTTCTGGTCTCTGACAGATAGTATTGCGGACGAAGGCTCAAACTCTA
CGCCACTAGGCATGATGACGTTTTCAGCCACAGCATGTAATCATGCTCAT
GCCCGATTCTCATCCCAACGCCGTCAATTTGCTCTGAATATTTTCTCCTA
CTAAGGCCAACAAAAACAACATCCCCTCTTCCTTATTTTCATGATCACCC
ATCGAACGATGCTCATTGAAATTTTGTCGCCCTCTCCTCCTCTCCCCTTC
CTTTCCAGCAGGATGGCTCGAGATGAGGATGACAAGCGACCCCGTGGCGC
TCGAGCCATCATCTCTTGGTGCATGGCCTCTTCTTGGAGACGGGCTTTAT
TGGGTTGTACACTGGGGATATTTGCAATGGTCTGGTTTGTGACCCATCTG
GCAAGCAACATGGACGGGGGCAGTAGCGGAAGCAGCATGCTGAGTACGTC
CACAATCACCAACAGCAGAGACAAGAATGCCAACTTTACCCCTTCCACGG
CTTCATCTTTACCCCCTCACATCAAGGGCAATACCATCATGGCGGAGATG
CCCACAGTCGCTGCTATCCCTCTAAAGAGCGTGAAGAGCGAAGATGACGT
CTCTACCCTCGAGCACGCCTCCCCTTTGCTCCGCACCACTAAAGAGGGGG
GAAACACCCCCCAGCTACCATTTGTATCTGCGAAAAAAGATAATAATGAA
GGTGAAAGTCTCGGGAACAACGCCGTCATCACGACCATCACATCCATCGA
CAGCGGCGGCATCAGCAAGGGCAACGAGGACAACGGTGACACGGACTCCA
CTCTTGCGGACATTGAGAAGAAAGACAGTGCGACCTCTGAGACCGTAACC
ACTACTGCTAGCACGGCTGAGGCTGCTACAACAGCTTTCCCCCTCGTCTG
TCCCTATTACGACGACATACCTAGCCCGTTTCCCGCCTCTTTTTGGTACG
TCAAGAACCCCAAGACAGCCAGCAGCACACTTGGCGGCGTCTTCCGCAGT
GTAGCAGCCCACCACGGCGTGGAAATGCTCAACTCGGACGAAATACACAT
GGACTTACCCCAGCTTAAGCGTACCATCGCCGAGGTGCTGGCGGCCTTCG
GCAGTGCCGTGGCTCCCGATCCGCCTCTCGGGCTGGCCAACCACATGCCA
TTCGATATTAGTGCCCGCGACATTTTCAGAAAGACTGCGCCTGTGATGCT
GTTTACCTCGGTTCGTGAGCCTGTTGCTCAATTTCATTCGCACTTCGTGG
AGGTTTGCAAACAAGGGAAGAAGAGAAGAGAAAGTAGTAAATGTTTTGGC
CCGGCGGTACAGGAGCGGACGGCGATGGCGAATGCCATGGAACCCGACGC
TCAGTTTGCCTATATTCGCGGGGACGCATCTGATGCCGAGTCTGCTGCGG
CACAGTATGATTTTGTGTTTCTGCGGGAGCGCCTGGAGGAATCGTTGGTG
GCCTTTATGATCATGTACGGCCTGGACTTTGCCGACATTGCACATGTTGC
CGCCAAGGTGCGCACGGAATTATACCCTGGGCCGAGAGAGCTGCCTGAAG
AATTGAATGAACTGATTCGCACCAAGACAACCGAGGACGCTAAGCTCTGG
GCCAAGGCAAACATGATGCTGGATGAGAAAATTACTGCCATAAATGGCCA
CTGTGGTGGTAAGGCGTACTTTTCGTCAATGCTAACAGTTTTCCGGAAAT
TGCAAAAAGTGGTGATGCAGGAATGCACAGATTTTCGTGGTTGGTACAAG
AAGCATGGTTTTTCGACCGTGCTCCGGTATTGGGGCGACAATGGCCAGGC
ACCCCGATGCCGAGACTTTGTGGTTCGCCGTGAGATGCGTGCTTGGCAAA
AGCATCATGTGACGGAAATGCTCAGGGCCGCTATGGCTAAATCAAGAGGA
GGAAATACAGCGCCGATCTTGGAATCAAAAGGACCAGCAGTAAATGGCTG
GGGTCTACCAAAAGATGCATGATTGCCTTGACGATTTCGATGAAATCAGA
AAAAGGAGGGCAGTACGCAGGACAGTATGATAGCGTTTGTATATATATTA
TAAATGGGGCGCGATTGGTACTCTTTCTCCATTTGATTGGAAAGTGAAGT
GTACAGATTTAAACTTAAATAGAACCTCCAGATTCTTCAATTTTTTCCAA
AGAGGATTCACGGGGTCATCAAAACGGCTTCTCCAAGGCAGATAACCGTG
CGTTGGCCGGTCGTGGGGGCTTCAAGCGAATAAAAGACTATGGTCTGGCA
TGTATATGACCATAGCCTACCAGGTGACCCATGCTGATAACTATAAAGCA
TTACCGCCGTGATTATAAATTTGTTGTCATAACATAAGCACCAAAGTAAG
CCCGCCCCGCCTGACGGGGAAGCTGCCGGCATCAGTCCCACTCGTTGGCG
CGGGACGACCGGCAGCCAAAAGAACGGCTTGCTCAGAGCGGGATGGCGTC
ACCGTCCCGCGCCAACGAGTGGAACTGATGCCGGCAGCTTCCCCGTCAGG
CGGGGTGGGCTTAATTTGATGCTCATGTTATGACAACAAATTTATAATCT
TGGCGGTAATGCTTTATAGTGGTCAGCATGACGAGAGTGGGCACCATTTC
CATTCTGCGTTAGATAAGAAAGTGACAGCGTGATTTGATCTGCTTACGCT
ATATATGGTACAAGCAGCAGTGTTATTAGGTGTCATGCGATATGGTCTTA
ACAAAACAAATTGGATAAAATACAAGATGCAACAGAATGA

Coding sequence (CDS) from alignment at scaffold_5:24202..26991-

>mRNA_2321 ID=mRNA_2321|Name=jgi.p|Nanoce1779_2|579931|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_5:24202..26991- (Nannochloropsis oceanica)
ATGATCACCCATCGAACGATGCTCATTGAAATTTTGTCGCCCTCTCCTCC
TCTCCCCTTCCTTTCCAGCAGGATGGCTCGAGATGAGGATGACAAGCGAC
CCCGTGGCGCTCGAGCCATCATCTCTTGGTGCATGGCCTCTTCTTGGAGA
CGGGCTTTATTGGGTTGTACACTGGGGATATTTGCAATGGTCTGGTTTGT
GACCCATCTGGCAAGCAACATGGACGGGGGCAGTAGCGGAAGCAGCATGC
TGAGTACGTCCACAATCACCAACAGCAGAGACAAGAATGCCAACTTTACC
CCTTCCACGGCTTCATCTTTACCCCCTCACATCAAGGGCAATACCATCAT
GGCGGAGATGCCCACAGTCGCTGCTATCCCTCTAAAGAGCGTGAAGAGCG
AAGATGACGTCTCTACCCTCGAGCACGCCTCCCCTTTGCTCCGCACCACT
AAAGAGGGGGGAAACACCCCCCAGCTACCATTTGTATCTGCGAAAAAAGA
TAATAATGAAGGTGAAAGTCTCGGGAACAACGCCGTCATCACGACCATCA
CATCCATCGACAGCGGCGGCATCAGCAAGGGCAACGAGGACAACGGTGAC
ACGGACTCCACTCTTGCGGACATTGAGAAGAAAGACAGTGCGACCTCTGA
GACCGTAACCACTACTGCTAGCACGGCTGAGGCTGCTACAACAGCTTTCC
CCCTCGTCTGTCCCTATTACGACGACATACCTAGCCCGTTTCCCGCCTCT
TTTTGGTACGTCAAGAACCCCAAGACAGCCAGCAGCACACTTGGCGGCGT
CTTCCGCAGTGTAGCAGCCCACCACGGCGTGGAAATGCTCAACTCGGACG
AAATACACATGGACTTACCCCAGCTTAAGCGTACCATCGCCGAGGTGCTG
GCGGCCTTCGGCAGTGCCGTGGCTCCCGATCCGCCTCTCGGGCTGGCCAA
CCACATGCCATTCGATATTAGTGCCCGCGACATTTTCAGAAAGACTGCGC
CTGTGATGCTGTTTACCTCGGTTCGTGAGCCTGTTGCTCAATTTCATTCG
CACTTCGTGGAGGTTTGCAAACAAGGGAAGAAGAGAAGAGAAAGTAGTAA
ATGTTTTGGCCCGGCGGTACAGGAGCGGACGGCGATGGCGAATGCCATGG
AACCCGACGCTCAGTTTGCCTATATTCGCGGGGACGCATCTGATGCCGAG
TCTGCTGCGGCACAGTATGATTTTGTGTTTCTGCGGGAGCGCCTGGAGGA
ATCGTTGGTGGCCTTTATGATCATGTACGGCCTGGACTTTGCCGACATTG
CACATGTTGCCGCCAAGGTGCGCACGGAATTATACCCTGGGCCGAGAGAG
CTGCCTGAAGAATTGAATGAACTGATTCGCACCAAGACAACCGAGGACGC
TAAGCTCTGGGCCAAGGCAAACATGATGCTGGATGAGAAAATTACTGCCA
TAAATGGCCACTGTGGTGGTAAGGCGTACTTTTCGTCAATGCTAACAGTT
TTCCGGAAATTGCAAAAAGTGGTGATGCAGGAATGCACAGATTTTCGTGG
TTGGTACAAGAAGCATGGTTTTTCGACCGTGCTCCGGTATTGGGGCGACA
ATGGCCAGGCACCCCGATGCCGAGACTTTGTGGTTCGCCGTGAGATGCGT
GCTTGGCAAAAGCATCATGTGACGGAAATGCTCAGGGCCGCTATGGCTAA
ATCAAGAGGAGGAAATACAGCGCCGATCTTGGAATCAAAAGGACCAGCAG
TAAATGGCTGGGGTCTACCAAAAGATGCATGA

Synonyms

Publications