jgi.p|Nanoce1779_2|579928, mRNA_2320 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579928
Unique NamemRNA_2320
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1259
Alignment locationscaffold_5:20991..22249 -

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Properties
Property NameValue
TranscriptId580014
TrackFilteredModels2
ProteinId579928
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:20991..22249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579928gene_2320Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579928mRNA_2320-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2320CDS_2320Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2320 ID=mRNA_2320|Name=jgi.p|Nanoce1779_2|579928|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp
ATTTTGCAGAGGTGCAACAACACTGAGACTTGTTCTGGCCACATTCACGA
CTCAGACACTGCCCACATTCTCTCATCTGCACCTCTGACACCTTTCCCCT
TAATGGTCCCCCCAACACACCGTACAGTCACTGTCAACGTACTCATCCAG
CCCGCATTCGCCTTCATCTCCCCATCCCCCCTCCAACAGCTGCAATATCC
TTGCAACTCCAAGCATGGCTCCAGCTTCCGCATCTACCCCCACTGATGCC
CCTGCTGCTGCATTTCTTGCCTTTCCGCGTCTGACCTCCGACCTGATTTT
TGACCTAGCGGGCTTTCTGGATGGTGCTACATTGGTTTACTTCGCTTCGA
CGAGCAAGGCGTTGTGCTCGCTTCTTCTGCCTCCTCCTTCCGCATCGAAT
TCCTACTCTCTTTCCTCTCTCCTTCAGACTGTCTCTCCACCGTCAACGTC
GTCGGCCGCTCGAGTGGCCCTGTGGTACGATCTTCTGGGCCGTGACAGCA
ACGGGGCCAAGCTCCTTCGCCGCCACAAGCATGCTGCTCATACCCTCCCG
AAGGGCCTTGCGACTGGCCTTCCGCTCCCATCCCCTCCTGAACTCTACGC
GACTGCCCACCGGCTCCGCTGTCTTGGCACTGGTTCCCGGGTGGCTTGGC
TACCGCTGCCTCGTGCTGTCAACCGCCAGGATGGCCCGCCGCCCATGGAG
GGTCACACGGCCTGCCTTCTCGATGATAGGTGGATGGTGATGATTGGCGG
CTTCACCAGCTTCGGCGTGCGGAACGATGTGTTTGTACTCGACACCTGGG
CACCCTTCGACAATCCTCACCCGAAATGGACTCGCTTTCCTTCTCCCTCA
GTTGTGGCTCGGCCCTTTCACCAAGACCATGGGCAGTATTACCAGCACCA
GCAGCTGGAGGAGCAGCAGCAGTTCCAGCACCAACTGCCAGTCTACGGCC
ACATGTGCTGCGCGCTCAGTAGGAGGCACGTGGCGGTGTTCGGAGGTGTG
ACCATGGGGGGCTACCAGGGTGATGTCAACGACTTTTACATCCTCGAGCT
GGATTTTTGCGAAGAGGGAGAAACGGTGGGTGGGAGCAGCAGCTACAGCA
GCAGCCGCACGACAATCTGTCGTGGCGTGCATCTCCTGCGTCCGTCCCTC
CTCCTGGGTCAGCCATTGACCTCTCGTGCGTATGGAAGTATGACTCTCCT
TTCCTCCATCCCGCCTTCTAAATGCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|579928

>mRNA_2320-protein ID=mRNA_2320-protein|Name=jgi.p|Nanoce1779_2|579928|organism=Nannochloropsis oceanica|type=polypeptide|length=140bp
MVLHWFTSLRRARRCARFFCLLLPHRIPTLFPLSFRLSLHRQRRRPLEWP
CGTIFWAVTATGPSSFAATSMLLIPSRRALRLAFRSHPLLNSTRLPTGSA
VLALVPGWLGYRCLVLSTARMARRPWRVTRPAFSMIGGW*
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mRNA from alignment at scaffold_5:20991..22249-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2320 ID=mRNA_2320|Name=jgi.p|Nanoce1779_2|579928|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp|location=Sequence derived from alignment at scaffold_5:20991..22249- (Nannochloropsis oceanica)
ATTTTGCAGAGGTGCAACAACACTGAGACTTGTTCTGGCCACATTCACGA
CTCAGACACTGCCCACATTCTCTCATCTGCACCTCTGACACCTTTCCCCT
TAATGGTCCCCCCAACACACCGTACAGTCACTGTCAACGTACTCATCCAG
CCCGCATTCGCCTTCATCTCCCCATCCCCCCTCCAACAGCTGCAATATCC
TTGCAACTCCAAGCATGGCTCCAGCTTCCGCATCTACCCCCACTGATGCC
CCTGCTGCTGCATTTCTTGCCTTTCCGCGTCTGACCTCCGACCTGATTTT
TGACCTAGCGGGCTTTCTGGATGGTGCTACATTGGTTTACTTCGCTTCGA
CGAGCAAGGCGTTGTGCTCGCTTCTTCTGCCTCCTCCTTCCGCATCGAAT
TCCTACTCTCTTTCCTCTCTCCTTCAGACTGTCTCTCCACCGTCAACGTC
GTCGGCCGCTCGAGTGGCCCTGTGGTACGATCTTCTGGGCCGTGACAGCA
ACGGGGCCAAGCTCCTTCGCCGCCACAAGCATGCTGCTCATACCCTCCCG
AAGGGCCTTGCGACTGGCCTTCCGCTCCCATCCCCTCCTGAACTCTACGC
GACTGCCCACCGGCTCCGCTGTCTTGGCACTGGTTCCCGGGTGGCTTGGC
TACCGCTGCCTCGTGCTGTCAACCGCCAGGATGGCCCGCCGCCCATGGAG
GGTCACACGGCCTGCCTTCTCGATGATAGGTGGATGGTGATGATTGGCGG
CTTCACCAGCTTCGGCGTGCGGAACGATGTGTTTGTACTCGACACCTGGG
CACCCTTCGACAATCCTCACCCGAAATGGACTCGCTTTCCTTCTCCCTCA
GTTGTGGCTCGGCCCTTTCACCAAGACCATGGGCAGTATTACCAGCACCA
GCAGCTGGAGGAGCAGCAGCAGTTCCAGCACCAACTGCCAGTCTACGGCC
ACATGTGCTGCGCGCTCAGTAGGAGGCACGTGGCGGTGTTCGGAGGTGTG
ACCATGGGGGGCTACCAGGGTGATGTCAACGACTTTTACATCCTCGAGCT
GGATTTTTGCGAAGAGGGAGAAACGGTGGGTGGGAGCAGCAGCTACAGCA
GCAGCCGCACGACAATCTGTCGTGGCGTGCATCTCCTGCGTCCGTCCCTC
CTCCTGGGTCAGCCATTGACCTCTCGTGCGTATGGAAGTATGACTCTCCT
TTCCTCCATCCCGCCTTCTAAATGCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCT
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Coding sequence (CDS) from alignment at scaffold_5:20991..22249-

>mRNA_2320 ID=mRNA_2320|Name=jgi.p|Nanoce1779_2|579928|organism=Nannochloropsis oceanica|type=CDS|length=420bp|location=Sequence derived from alignment at scaffold_5:20991..22249- (Nannochloropsis oceanica)
ATGGTGCTACATTGGTTTACTTCGCTTCGACGAGCAAGGCGTTGTGCTCG
CTTCTTCTGCCTCCTCCTTCCGCATCGAATTCCTACTCTCTTTCCTCTCT
CCTTCAGACTGTCTCTCCACCGTCAACGTCGTCGGCCGCTCGAGTGGCCC
TGTGGTACGATCTTCTGGGCCGTGACAGCAACGGGGCCAAGCTCCTTCGC
CGCCACAAGCATGCTGCTCATACCCTCCCGAAGGGCCTTGCGACTGGCCT
TCCGCTCCCATCCCCTCCTGAACTCTACGCGACTGCCCACCGGCTCCGCT
GTCTTGGCACTGGTTCCCGGGTGGCTTGGCTACCGCTGCCTCGTGCTGTC
AACCGCCAGGATGGCCCGCCGCCCATGGAGGGTCACACGGCCTGCCTTCT
CGATGATAGGTGGATGGTGA
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Synonyms
Publications