jgi.p|Nanoce1779_2|579924, mRNA_2318 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579924
Unique Name	mRNA_2318
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1148
Alignment location	scaffold_5:18777..19924 +

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Properties


Property Name	Value
TranscriptId	580010
Track	FilteredModels2
ProteinId	579924

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:18777..19924 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579924	gene_2318	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579924	mRNA_2318-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2318	CDS_2318	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:18777..19924+
coding sequence from alignment at scaffold_5:18777..19924+

mRNA sequence

>mRNA_2318 ID=mRNA_2318|Name=jgi.p|Nanoce1779_2|579924|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
ATTGTGTCTTGCGGCGCTCTGATATGCTGCTGATAGCATGCACTCACGAA
GTGCAGGGAGCAGGAAAGGAGGGAAGGAGGGAGGGAGAGAAGTGACTTTA
AGTGAGCGCATATTTTTATGTTTATTTAAAGACGGCGCTCTTACAGGGCG
GCAGGCAGGTAAAGGGCGCTGCGAGGGCAGGGAGGGGGAGGAAAGTCACA
AAAGAAAAAGTGAACAAGAACCAGAGAAGGAACAACCGGGAAATTAGGAA
GGTCAATGCAATGACAGAACGTTAAAACAGCAAGAGCCGCAGCACCACCA
TCACCAGCAGGAGTCAATTCGTTAATGTACGACTGCACGCAGTAGATGAC
AGACGGAAAAGACTGAAGATAGCAACGAGTAAAAAAAGTGAAGACGTCAC
CAAAGCACGGGAGGGTACGACGACGCTCACTAGTAGCGCCCCCTGCATTT
CCTCATGCTTAGCCCATCACCGCGCAATTGTTATAGTTCCACTTCCTCAT
CCTCATGCGTCTCCTGTGGCTTGTGCTGTATTCGATATATTCGCACAATT
TATCTCTGCCTCTGCCTCCGTCTTCTGAGCGTCCCACTAGTGCTGCTTTC
TTTCTATCACTCCCTCATCCTTTCCTCATGTACACTGCTCCTTCTTTTCC
CCCTTTCCTTCCTCGCCCATATGTACTCTATACTCTCTTTTCCTAACACA
CCTCTTCCTCGGGCATCAATGTACTCTCTCTCCCTTACACCACCTTCATA
AAATAGGCGCTCCATCTTCCACCCATCTAATCCTCTTTCCTCTTTTCTCT
GTCGTTTCTTATATATTGCCTTTTTCCTGATATCTTGTCCGCACATCCTC
CCCCTCCACTGACTTTTACTCCCGACTCCGTATGCCGCTTCCTTCCGACT
CCAGAAGCCGTCTTATCTACATTCGTTTCCAGCATCACTTTTACATGCAC
CCCTCTTTCGATCTTTACCATGTCCCTACACCCTTCCACTCGTTTATACC
AAAACACTCTCTTCAGTTCTCCTTCGCCTCTTCCTCCTCCTCCTCCTCCT
CCTCTTCCTCCTCCTCTTCCTCCTCCCCACCCTCATCCTCACTCTCACTA
CCCCCAGTGCTGCTCCAGACGTGATCGCTACCCTCATCACTGCTCCCG

protein sequence of jgi.p|Nanoce1779_2|579924

>mRNA_2318-protein ID=mRNA_2318-protein|Name=jgi.p|Nanoce1779_2|579924|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MLSPSPRNCYSSTSSSSCVSCGLCCIRYIRTIYLCLCLRLLSVPLVLLSF
YHSLILSSCTLLLLFPLSFLAHMYSILSFPNTPLPRASMYSLSLTPPS*

mRNA from alignment at scaffold_5:18777..19924+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2318 ID=mRNA_2318|Name=jgi.p|Nanoce1779_2|579924|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp|location=Sequence derived from alignment at scaffold_5:18777..19924+ (Nannochloropsis oceanica)
ATTGTGTCTTGCGGCGCTCTGATATGCTGCTGATAGCATGCACTCACGAA
GTGCAGGGAGCAGGAAAGGAGGGAAGGAGGGAGGGAGAGAAGTGACTTTA
AGTGAGCGCATATTTTTATGTTTATTTAAAGACGGCGCTCTTACAGGGCG
GCAGGCAGGTAAAGGGCGCTGCGAGGGCAGGGAGGGGGAGGAAAGTCACA
AAAGAAAAAGTGAACAAGAACCAGAGAAGGAACAACCGGGAAATTAGGAA
GGTCAATGCAATGACAGAACGTTAAAACAGCAAGAGCCGCAGCACCACCA
TCACCAGCAGGAGTCAATTCGTTAATGTACGACTGCACGCAGTAGATGAC
AGACGGAAAAGACTGAAGATAGCAACGAGTAAAAAAAGTGAAGACGTCAC
CAAAGCACGGGAGGGTACGACGACGCTCACTAGTAGCGCCCCCTGCATTT
CCTCATGCTTAGCCCATCACCGCGCAATTGTTATAGTTCCACTTCCTCAT
CCTCATGCGTCTCCTGTGGCTTGTGCTGTATTCGATATATTCGCACAATT
TATCTCTGCCTCTGCCTCCGTCTTCTGAGCGTCCCACTAGTGCTGCTTTC
TTTCTATCACTCCCTCATCCTTTCCTCATGTACACTGCTCCTTCTTTTCC
CCCTTTCCTTCCTCGCCCATATGTACTCTATACTCTCTTTTCCTAACACA
CCTCTTCCTCGGGCATCAATGTACTCTCTCTCCCTTACACCACCTTCATA
AAATAGGCGCTCCATCTTCCACCCATCTAATCCTCTTTCCTCTTTTCTCT
GTCGTTTCTTATATATTGCCTTTTTCCTGATATCTTGTCCGCACATCCTC
CCCCTCCACTGACTTTTACTCCCGACTCCGTATGCCGCTTCCTTCCGACT
CCAGAAGCCGTCTTATCTACATTCGTTTCCAGCATCACTTTTACATGCAC
CCCTCTTTCGATCTTTACCATGTCCCTACACCCTTCCACTCGTTTATACC
AAAACACTCTCTTCAGTTCTCCTTCGCCTCTTCCTCCTCCTCCTCCTCCT
CCTCTTCCTCCTCCTCTTCCTCCTCCCCACCCTCATCCTCACTCTCACTA
CCCCCAGTGCTGCTCCAGACGTGATCGCTACCCTCATCACTGCTCCCG

Coding sequence (CDS) from alignment at scaffold_5:18777..19924+

>mRNA_2318 ID=mRNA_2318|Name=jgi.p|Nanoce1779_2|579924|organism=Nannochloropsis oceanica|type=CDS|length=297bp|location=Sequence derived from alignment at scaffold_5:18777..19924+ (Nannochloropsis oceanica)
ATGCTTAGCCCATCACCGCGCAATTGTTATAGTTCCACTTCCTCATCCTC
ATGCGTCTCCTGTGGCTTGTGCTGTATTCGATATATTCGCACAATTTATC
TCTGCCTCTGCCTCCGTCTTCTGAGCGTCCCACTAGTGCTGCTTTCTTTC
TATCACTCCCTCATCCTTTCCTCATGTACACTGCTCCTTCTTTTCCCCCT
TTCCTTCCTCGCCCATATGTACTCTATACTCTCTTTTCCTAACACACCTC
TTCCTCGGGCATCAATGTACTCTCTCTCCCTTACACCACCTTCATAA

Synonyms

Publications