jgi.p|Nanoce1779_2|579917, mRNA_2316 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579917
Unique NamemRNA_2316
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length460
Alignment locationscaffold_5:15022..15481 +

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Properties
Property NameValue
TranscriptId580003
TrackFilteredModels2
ProteinId579917
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:15022..15481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579917gene_2316Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579917mRNA_2316-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2316CDS_2316Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2316 ID=mRNA_2316|Name=jgi.p|Nanoce1779_2|579917|organism=Nannochloropsis oceanica|type=mRNA|length=460bp
CGAAGGCGATGGCGAGGGGAATGGCGTGGGATGAGGCGGAAACGAGGAGG
ATGGGAAAGGGAAGCGGAAGAAGAAGAGGCCAAGGATGATCGTGCTGGCG
ACACAACCTAATGTTGCGAGCCTGCACGCTGTGGACGCGCGTTGCGGTCC
CTGGGATTGCAGCCCGCTATTGGCCGAACCCAAGCCCTGGTAGCGCTGGG
AATTGCTCATTTCTTATCTTGCTCCTCTGCCACCAGAGGTTCGCTAGTAG
TGGTTCTATCCTACCTTCTTCTCGGCAGGGAGCCAATGGGAGAAAACAGT
GTGTATGCAGCCAGATTCGCACAAGTGTATTGAGTATAGGTGTGTAGAGA
GTCGGAAGAGGCGTGAGGGGTGGCACAGAGGGACGTCGAAATGGCAGGCG
GCCGGAGGAGACAACAACGAAGCTGCGACGTTAAGGCAGCTTTTTTACCA
GGAGCCTGTT
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protein sequence of jgi.p|Nanoce1779_2|579917

>mRNA_2316-protein ID=mRNA_2316-protein|Name=jgi.p|Nanoce1779_2|579917|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MLRACTLWTRVAVPGIAARYWPNPSPGSAGNCSFLILLLCHQRFASSGSI
LPSSRQGANGRKQCVCSQIRTSVLSIGV*
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mRNA from alignment at scaffold_5:15022..15481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2316 ID=mRNA_2316|Name=jgi.p|Nanoce1779_2|579917|organism=Nannochloropsis oceanica|type=mRNA|length=460bp|location=Sequence derived from alignment at scaffold_5:15022..15481+ (Nannochloropsis oceanica)
CGAAGGCGATGGCGAGGGGAATGGCGTGGGATGAGGCGGAAACGAGGAGG
ATGGGAAAGGGAAGCGGAAGAAGAAGAGGCCAAGGATGATCGTGCTGGCG
ACACAACCTAATGTTGCGAGCCTGCACGCTGTGGACGCGCGTTGCGGTCC
CTGGGATTGCAGCCCGCTATTGGCCGAACCCAAGCCCTGGTAGCGCTGGG
AATTGCTCATTTCTTATCTTGCTCCTCTGCCACCAGAGGTTCGCTAGTAG
TGGTTCTATCCTACCTTCTTCTCGGCAGGGAGCCAATGGGAGAAAACAGT
GTGTATGCAGCCAGATTCGCACAAGTGTATTGAGTATAGGTGTGTAGAGA
GTCGGAAGAGGCGTGAGGGGTGGCACAGAGGGACGTCGAAATGGCAGGCG
GCCGGAGGAGACAACAACGAAGCTGCGACGTTAAGGCAGCTTTTTTACCA
GGAGCCTGTT
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Coding sequence (CDS) from alignment at scaffold_5:15022..15481+

>mRNA_2316 ID=mRNA_2316|Name=jgi.p|Nanoce1779_2|579917|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_5:15022..15481+ (Nannochloropsis oceanica)
ATGTTGCGAGCCTGCACGCTGTGGACGCGCGTTGCGGTCCCTGGGATTGC
AGCCCGCTATTGGCCGAACCCAAGCCCTGGTAGCGCTGGGAATTGCTCAT
TTCTTATCTTGCTCCTCTGCCACCAGAGGTTCGCTAGTAGTGGTTCTATC
CTACCTTCTTCTCGGCAGGGAGCCAATGGGAGAAAACAGTGTGTATGCAG
CCAGATTCGCACAAGTGTATTGAGTATAGGTGTGTAG
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Synonyms
Publications