jgi.p|Nanoce1779_2|579909, mRNA_2315 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579909
Unique NamemRNA_2315
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1017
Alignment locationscaffold_5:10018..11459 -

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Properties
Property NameValue
TranscriptId579995
TrackFilteredModels2
ProteinId579909
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:10018..11459 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579909gene_2315Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579909mRNA_2315-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2315CDS_2315Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2315 ID=mRNA_2315|Name=jgi.p|Nanoce1779_2|579909|organism=Nannochloropsis oceanica|type=mRNA|length=1017bp
CTACCATTGTCGTCATCTCCAGTTATGAAACACGCCTCGATCCCGTCCCT
CGATGCTTTGGCAGTGCTAGGGCTCCTCGCGCTTGCCGGTCTACTTTCGA
ACGAGCTGCTGGAGAGGCTTTCTCATAGCCCCTTGGCCGACAGCACCCTC
CCGTATCCCTCCACAGCCCACTTATATCCCTATTTTCAATTCTGGCACCC
ATTACGGAAATACCGGGCTCTTCTGGTCACTTTATACGTGCTGGCCAAAT
TGGGCATCAATAGGAGTCATGGTGCCGGGCTTGGATGCGCTGACCGTACA
TGCCCTCACCGACCTTTCTCCCGCTGCTGCGATGACGGGCGAGAGGCTCT
TAAAACTTCTGCAAGTCTCCAGAGATCTTGCGTGGTCCTTCCTTTTCTTG
TACTTTGTGCCGTTATGGGATTTGAGGCGCGAAGGAGGACGAAGAAGTTG
CTGGGCAATAGCAAGGACAGCCTCATTTTGGTGTCCTCCGTGACAGCAGC
GCTCCGTGTTATATTGGGAGCAGCCATCTGCCTGCTCGGGAGCCTTGCAG
AGGACCTGACGCTGAACCCCACGGACCATCCCCTGCTTAAAAGCGCCGAG
TCCTCCGTGGTGCCCGTCGCAGCGCTAGGACTCGTCTGGGTCGGATTTGG
CCTCAGACTACTGCTACCGCTACTGCTGCCGCTGTGCCAGTCAACCCCGT
GGGGAAAGAGAAGTGATAACAGCGCTAGATAGCTCATGATGAACGCATTG
ATAACACGATGATGACACTACTGCATTGAACACGATGAAATTTAAGAAGG
GAAAGAAGACTCCCCACGTATCTTGCATTTTAGGCGGCTTTGGGTCAATG
TTTTCTTTATTCACAATTAGAGGAGGGCTCTGCTTTCTTCCAACCGACAT
GCTGGCCCAAGTGTCCTCACACACTCTATCTTTAAACCTTCATGTTCTTC
CTCCGGGTCTGTCTGCTCCTTTATCAGTCGCCTTCTTCCCTGCCGCACTT
GATCTTACCCTACCCGC
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protein sequence of jgi.p|Nanoce1779_2|579909

>mRNA_2315-protein ID=mRNA_2315-protein|Name=jgi.p|Nanoce1779_2|579909|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
LPLSSSPVMKHASIPSLDALAVLGLLALAGLLSNELLERLSHSPLADSTL
PYPSTAHLYPYFQFWHPLRKYRALLVTLYVLAKLGINRSHGAGLGCADRT
CPHRPFSRCCDDGREALKTSASLQRSCVVLPFLVLCAVMGFEARRRTKKL
LGNSKDSLILVSSVTAALRVILGAAICLLGSLAEDLTLNPTDHPLLKSAE
SSVVPVAALGLVWVGFGLRLLLPLLLPLCQSTPWGKRSDNSAR*
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mRNA from alignment at scaffold_5:10018..11459-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2315 ID=mRNA_2315|Name=jgi.p|Nanoce1779_2|579909|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp|location=Sequence derived from alignment at scaffold_5:10018..11459- (Nannochloropsis oceanica)
CTACCATTGTCGTCATCTCCAGTTATGAAACACGCCTCGATCCCGTCCCT
CGATGCTTTGGCAGTGCTAGGGCTCCTCGCGCTTGCCGGTCTACTTTCGA
ACGAGCTGCTGGAGAGGCTTTCTCATAGCCCCTTGGCCGACAGCACCCTC
CCGTATCCCTCCACAGCCCACTTATATCCCTATTTTCAATTCTGGCACCC
ATTACGGAAATACCGGGCTCTTCTGGTCACTTTATACGTGCTGGCCAAAT
TGGGCATCAATAGGAGTCATGGTGCCGGGCTTGGATGCGCTGACCGTACA
TGCCCTCACCGACCTTTCTCCCGCTGCTGCGATGACGGGCGAGAGGCTCT
TAAAACTTCTGCAAGTCTCCAGAGATCTTGCGTGGTCCTTCCTTTTCTTG
TACTTTGTGCCGTTATGGGATTTGAGGCGCGAAGGAGGACGAAGAAGTTG
CTGGGCAATAGCAAGGACAGCCTCATTTTGGTGTCCTCCGTGACAGCAGC
GCTCCGTGTTATATTGGGAGCAGCCATCTGCCTGCTCGGGTAAGTCCTCG
TGCGTTTTTCCGCACCCTTCCTTTTCCTCACTCACATGCTGATTATCAAG
CTTCTATTTTTCCTGCCCGACAGCATCCTCCTCCCCCTTCCTCGCCCTGC
ACCGGCTCCCCAGGAGCCTTGCAGAGGACCTGACGCTGAACCCCACGGAC
CATCCCCTGCTTAAAAGGTTTATCGCCTCAGGAAGTGGTCTACCGATTCG
TCCACTGGGAGGACCCCGACTTCATCGACGACCCGGGCGCTGTCACGATC
GTCCGGTAGGGAAGGAGAAGAGAGGGGGGATGGGAGAAGGGAGGGAAGGA
GAAGTGGGGAGCGCGCGAGGGAGGGAAGGAAAAAGGGAGGAAGCTAGACT
CGATATCGGAACTGAGCACGCATATATGATTTCAAAATGTTTTTTGCACT
TCCCATATTGCCTCTTCTCATCCTCCCTTCCCACCGACATACACAAACAC
GACAACCACGACAACAAGCGCCGAGTCCTCCGTGGTGCCCGTCGCAGCGC
TAGGACTCGTCTGGGTCGGATTTGGCCTCAGACTACTGCTACCGCTACTG
CTGCCGCTGTGCCAGTCAACCCCGTGGGGAAAGAGAAGTGATAACAGCGC
TAGATAGCTCATGATGAACGCATTGATAACACGATGATGACACTACTGCA
TTGAACACGATGAAATTTAAGAAGGGAAAGAAGACTCCCCACGTATCTTG
CATTTTAGGCGGCTTTGGGTCAATGTTTTCTTTATTCACAATTAGAGGAG
GGCTCTGCTTTCTTCCAACCGACATGCTGGCCCAAGTGTCCTCACACACT
CTATCTTTAAACCTTCATGTTCTTCCTCCGGGTCTGTCTGCTCCTTTATC
AGTCGCCTTCTTCCCTGCCGCACTTGATCTTACCCTACCCGC
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Coding sequence (CDS) from alignment at scaffold_5:10018..11459-

>mRNA_2315 ID=mRNA_2315|Name=jgi.p|Nanoce1779_2|579909|organism=Nannochloropsis oceanica|type=CDS|length=2196bp|location=Sequence derived from alignment at scaffold_5:10018..11459- (Nannochloropsis oceanica)
CGCCGAGTCCTCCGTGGTGCCCGTCGCAGCGCTAGGACTCGTCTGGGTCG
GATTTGGCCTCAGACTACTGCTACCGCTACTGCTGCCGCTGTGCCAGTCA
ACCCCGTGGGGAAAGAGAAGTGATAACAGCGCTAGATAGGAGCCTTGCAG
AGGACCTGACGCTGAACCCCACGGACCATCCCCTGCTTAAAAGCTACCAT
TGTCGTCATCTCCAGTTATGAAACACGCCTCGATCCCGTCCCTCGATGCT
TTGGCAGTGCTAGGGCTCCTCGCGCTTGCCGGTCTACTTTCGAACGAGCT
GCTGGAGAGGCTTTCTCATAGCCCCTTGGCCGACAGCACCCTCCCGTATC
CCTCCACAGCCCACTTATATCCCTATTTTCAATTCTGGCACCCATTACGG
AAATACCGGGCTCTTCTGGTCACTTTATACGTGCTGGCCAAATTGGGCAT
CAATAGGAGTCATGGTGCCGGGCTTGGATGCGCTGACCGTACATGCCCTC
ACCGACCTTTCTCCCGCTGCTGCGATGACGGGCGAGAGGCTCTTAAAACT
TCTGCAAGTCTCCAGAGATCTTGCGTGGTCCTTCCTTTTCTTGTACTTTG
TGCCGTTATGGGATTTGAGGCGCGAAGGAGGACGAAGAAGTTGCTGGGCA
ATAGCAAGGACAGCCTCATTTTGGTGTCCTCCGTGACAGCAGCGCTCCGT
GTTATATTGGGAGCAGCCATCTGCCTGCTCGGCGCCGAGTCCTCCGTGGT
GCCCGTCGCAGCGCTAGGACTCGTCTGGGTCGGATTTGGCCTCAGACTAC
TGCTACCGCTACTGCTGCCGCTGTGCCAGTCAACCCCGTGGGGAAAGAGA
AGTGATAACAGCGCTAGATAGGAGCCTTGCAGAGGACCTGACGCTGAACC
CCACGGACCATCCCCTGCTTAAAAGCTACCATTGTCGTCATCTCCAGTTA
TGAAACACGCCTCGATCCCGTCCCTCGATGCTTTGGCAGTGCTAGGGCTC
CTCGCGCTTGCCGGTCTACTTTCGAACGAGCTGCTGGAGAGGCTTTCTCA
TAGCCCCTTGGCCGACAGCACCCTCCCGTATCCCTCCACAGCCCACTTAT
ATCCCTATTTTCAATTCTGGCACCCATTACGGAAATACCGGGCTCTTCTG
GTCACTTTATACGTGCTGGCCAAATTGGGCATCAATAGGAGTCATGGTGC
CGGGCTTGGATGCGCTGACCGTACATGCCCTCACCGACCTTTCTCCCGCT
GCTGCGATGACGGGCGAGAGGCTCTTAAAACTTCTGCAAGTCTCCAGAGA
TCTTGCGTGGTCCTTCCTTTTCTTGTACTTTGTGCCGTTATGGGATTTGA
GGCGCGAAGGAGGACGAAGAAGTTGCTGGGCAATAGCAAGGACAGCCTCA
TTTTGGTGTCCTCCGTGACAGCAGCGCTCCGTGTTATATTGGGAGCAGCC
ATCTGCCTGCTCGGCGCCGAGTCCTCCGTGGTGCCCGTCGCAGCGCTAGG
ACTCGTCTGGGTCGGATTTGGCCTCAGACTACTGCTACCGCTACTGCTGC
CGCTGTGCCAGTCAACCCCGTGGGGAAAGAGAAGTGATAACAGCGCTAGA
TAGGAGCCTTGCAGAGGACCTGACGCTGAACCCCACGGACCATCCCCTGC
TTAAAAGCTACCATTGTCGTCATCTCCAGTTATGAAACACGCCTCGATCC
CGTCCCTCGATGCTTTGGCAGTGCTAGGGCTCCTCGCGCTTGCCGGTCTA
CTTTCGAACGAGCTGCTGGAGAGGCTTTCTCATAGCCCCTTGGCCGACAG
CACCCTCCCGTATCCCTCCACAGCCCACTTATATCCCTATTTTCAATTCT
GGCACCCATTACGGAAATACCGGGCTCTTCTGGTCACTTTATACGTGCTG
GCCAAATTGGGCATCAATAGGAGTCATGGTGCCGGGCTTGGATGCGCTGA
CCGTACATGCCCTCACCGACCTTTCTCCCGCTGCTGCGATGACGGGCGAG
AGGCTCTTAAAACTTCTGCAAGTCTCCAGAGATCTTGCGTGGTCCTTCCT
TTTCTTGTACTTTGTGCCGTTATGGGATTTGAGGCGCGAAGGAGGACGAA
GAAGTTGCTGGGCAATAGCAAGGACAGCCTCATTTTGGTGTCCTCCGTGA
CAGCAGCGCTCCGTGTTATATTGGGAGCAGCCATCTGCCTGCTCGG
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Synonyms
Publications