jgi.p|Nanoce1779_2|579907, mRNA_2314 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579907
Unique Name	mRNA_2314
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1147
Alignment location	scaffold_5:8657..10017 +

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Properties


Property Name	Value
TranscriptId	579993
Track	FilteredModels2
ProteinId	579907

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:8657..10017 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579907	gene_2314	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579907	mRNA_2314-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2314	CDS_2314	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:8657..10017+
coding sequence from alignment at scaffold_5:8657..10017+

mRNA sequence

>mRNA_2314 ID=mRNA_2314|Name=jgi.p|Nanoce1779_2|579907|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp
ACAGGGAAATGGAACCGACGCAGGTCCTTGCGGCCCTCGTCAGCAGCTGT
CCACCACGCTCTAGTCGAGAGGCCCTGGTTATGGCGTGCCATGGGGTATG
TCTGCTCCAGCCGGACCTAGTGCCGTTGTCCTCCTCCTCTTGGCCTTCAC
TCCTCAATGCATTTCGCGAGAGCTCCGAAGGTATTTACCCGACCCAGGAG
TTTTCCGTACAGGATTCGCAAGCATGTCAAGAAGGACGAGGGCAAGGGAG
GGCAGTGGGGGAGGAGGATCATATGTACATAAAGCCAGTAGGTCATGGCC
CCTGCAATGACGGTCACGACGACGCTCGGGAAGTGAAAAAAGAGGGCGAG
AACGAGGCTATTCTCGTCTTATATGGCCGTCGGCGTGGCCTCAGTGAGGC
GTTGGTGCACCGGCTGGAGCTGGGTGTGCGGGACTACATCCTTCCTTCTG
CTCGTGGCAAAAAAGAGGACATAAATGAGGGAGGCGTGGCGGAGGAGGAG
GAGAACGAGAGGAATACGGTGCTCATACCTGGAGGACTCCAAGAATGTCA
TTATGCATATGTCTGCCGTTTTGAGGCCCTGGCAGCGTGTCTCGCCACAC
ACTTCCTCAGCAAACTCCGTCCCGAGCTCTACGCAGCGCGCCAACTCCCT
TCCTTCTCCGACGTGATGCGGACCGAGGGAATCCCCACTTCCTCCTCCTC
TTCCTCCCCCAAGACTGCTAGTAGCGGCACCATCACCACTGCCACTCCGT
GTTGTCCTCCCGCGCGTACCGCGTACCGCTGCCTCTTTCAGGCCCGTCCT
CGTCCCCTCCCCTCCCGTCTCATGTTTCGCCCCGATGATAGGATGATGCC
CTTCTACCACCTTCCTCCCTCCCATGTCCACCCCCTCTACCCCTCTTTCC
CTCATCCCCTCCACTACGCGTCTGGTGGTCTGGATGAAGAGAGGACTGGT
GAGAGGAGCGGGGCCGGGGAGGCGAGGCCGAGGTTCCTGCCTGCGTTTGG
GATGCCACCTTTGTGGTACCCGGGGAGACGGTTTTTCGGGGGTGGGAGGG
AGAGAGGAAGGAGAGGAGTCTGATGATAGAGAGGTATTTCGGAGATAGGA
AGGTCAGGGGGAAGGAGGGAAGGAAGAATGTGTATAGAGGTGGGTGG

protein sequence of jgi.p|Nanoce1779_2|579907

>mRNA_2314-protein ID=mRNA_2314-protein|Name=jgi.p|Nanoce1779_2|579907|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MEPTQVLAALVSSCPPRSSREALVMACHGVCLLQPDLVPLSSSSWPSLLN
AFRESSEGIYPTQEFSVQDSQACQEGRGQGRAVGEEDHMYIKPVGHGPCN
DGHDDAREVKKEGENEAILVLYGRRRGLSEALVHRLELGVRDYILPSARG
KKEDINEGGVAEEEENERNTVLIPGGLQECHYAYVCRFEALAACLATHFL
SKLRPELYAARQLPSFSDVMRTEGIPTSSSSSSPKTASSGTITTATPCCP
PARTAYRCLFQARPRPLPSRLMFRPDDRMMPFYHLPPSHVHPLYPSFPHP
LHYASGGLDEERTGERSGAGEARPRFLPAFGMPPLWYPGRRFFGGGRERG
RRGV*

mRNA from alignment at scaffold_5:8657..10017+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2314 ID=mRNA_2314|Name=jgi.p|Nanoce1779_2|579907|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp|location=Sequence derived from alignment at scaffold_5:8657..10017+ (Nannochloropsis oceanica)
ACAGGGAAATGGAACCGACGCAGGTCCTTGCGGCCCTCGTCAGCAGCTGT
CCACCACGCTCTAGTCGAGAGGCCCTGGTTATGGCGTGCCATGGGGTATG
TCTGCTCCAGCCGGACCTAGTGCCGTTGTCCTCCTCCTCTTGGCCTTCAC
TCCTCAATGCATTTCGCGAGAGCTCCGAAGGTATTTACCCGACCCAGGAG
TTTTCCGTACAGGATTCGCAAGCATGTCAAGAAGGACGAGGGCAAGGGAG
GGCAGTGGGGGAGGAGGATCATATGTACATAAAGCCAGTAGGTCATGGCC
CCTGCAATGACGGTCACGACGACGCTCGGGAAGTGAAAAAAGAGGGCGAG
AACGAGGCTATTCTCGTCTTATATGGCCGTCGGCGTGGCCTCAGTGAGGC
GTTGGTGCACCGGCTGGAGCTGGGTGTGCGGGACTACATCCTTCCTTCTG
CTCGTGGCAAAAAAGAGGACATAAATGAGGGAGGCGTGGCGGAGGAGGAG
GAGAACGAGAGGAATACGGTGCTCATACCTGGAGGACTCCAAGAATGTCA
TTATGCATATGTCTGCCGTTTTGAGGCCCTGGCAGCGTGTCTCGCCACAC
ACTTCCTCAGCAAACTCCGTCCCGAGCTCTACGCAGCGCGCCAACTCCCT
TCCTTCTCCGACGTGATGCGGACCGAGGGAATCCCCACTTCCTCCTCCTC
TTCCTCCCCGTCCTCGCCCTCCTCCACATCTTCCTCCTCACCCTCCTTGC
TCCTTAACGAGCTGCTCCATTTCTTGTCCTGTTCCTCCATGCTCCGTCTC
TCGGCGACCAGCGCGGCAATACCAACAGTCCCTTGCCCAGGAGGAACGCA
CCTGGAAAATCTTTCTTCAACGAGACTTTCCTGTCGCTGCTGCTTCTCTG
GCTTCTTCCTCCACTACCTGCAGCAAGACTGCTAGTAGCGGCACCATCAC
CACTGCCACTCCGTGTTGTCCTCCCGCGCGTACCGCGTACCGCTGCCTCT
TTCAGGCCCGTCCTCGTCCCCTCCCCTCCCGTCTCATGTTTCGCCCCGAT
GATAGGATGATGCCCTTCTACCACCTTCCTCCCTCCCATGTCCACCCCCT
CTACCCCTCTTTCCCTCATCCCCTCCACTACGCGTCTGGTGGTCTGGATG
AAGAGAGGACTGGTGAGAGGAGCGGGGCCGGGGAGGCGAGGCCGAGGTTC
CTGCCTGCGTTTGGGATGCCACCTTTGTGGTACCCGGGGAGACGGTTTTT
CGGGGGTGGGAGGGAGAGAGGAAGGAGAGGAGTCTGATGATAGAGAGGTA
TTTCGGAGATAGGAAGGTCAGGGGGAAGGAGGGAAGGAAGAATGTGTATA
GAGGTGGGTGG

Coding sequence (CDS) from alignment at scaffold_5:8657..10017+

>mRNA_2314 ID=mRNA_2314|Name=jgi.p|Nanoce1779_2|579907|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_5:8657..10017+ (Nannochloropsis oceanica)
ATGGAACCGACGCAGGTCCTTGCGGCCCTCGTCAGCAGCTGTCCACCACG
CTCTAGTCGAGAGGCCCTGGTTATGGCGTGCCATGGGGTATGTCTGCTCC
AGCCGGACCTAGTGCCGTTGTCCTCCTCCTCTTGGCCTTCACTCCTCAAT
GCATTTCGCGAGAGCTCCGAAGGTATTTACCCGACCCAGGAGTTTTCCGT
ACAGGATTCGCAAGCATGTCAAGAAGGACGAGGGCAAGGGAGGGCAGTGG
GGGAGGAGGATCATATGTACATAAAGCCAGTAGGTCATGGCCCCTGCAAT
GACGGTCACGACGACGCTCGGGAAGTGAAAAAAGAGGGCGAGAACGAGGC
TATTCTCGTCTTATATGGCCGTCGGCGTGGCCTCAGTGAGGCGTTGGTGC
ACCGGCTGGAGCTGGGTGTGCGGGACTACATCCTTCCTTCTGCTCGTGGC
AAAAAAGAGGACATAAATGAGGGAGGCGTGGCGGAGGAGGAGGAGAACGA
GAGGAATACGGTGCTCATACCTGGAGGACTCCAAGAATGTCATTATGCAT
ATGTCTGCCGTTTTGAGGCCCTGGCAGCGTGTCTCGCCACACACTTCCTC
AGCAAACTCCGTCCCGAGCTCTACGCAGCGCGCCAACTCCCTTCCTTCTC
CGACGTGATGCGGACCGAGGGAATCCCCACTTCCTCCTCCTCTTCCTCCC
CCAAGACTGCTAGTAGCGGCACCATCACCACTGCCACTCCGTGTTGTCCT
CCCGCGCGTACCGCGTACCGCTGCCTCTTTCAGGCCCGTCCTCGTCCCCT
CCCCTCCCGTCTCATGTTTCGCCCCGATGATAGGATGATGCCCTTCTACC
ACCTTCCTCCCTCCCATGTCCACCCCCTCTACCCCTCTTTCCCTCATCCC
CTCCACTACGCGTCTGGTGGTCTGGATGAAGAGAGGACTGGTGAGAGGAG
CGGGGCCGGGGAGGCGAGGCCGAGGTTCCTGCCTGCGTTTGGGATGCCAC
CTTTGTGGTACCCGGGGAGACGGTTTTTCGGGGGTGGGAGGGAGAGAGGA
AGGAGAGGAGTCTGAATGGAACCGACGCAGGTCCTTGCGGCCCTCGTCAG
CAGCTGTCCACCACGCTCTAGTCGAGAGGCCCTGGTTATGGCGTGCCATG
GGGTATGTCTGCTCCAGCCGGACCTAGTGCCGTTGTCCTCCTCCTCTTGG
CCTTCACTCCTCAATGCATTTCGCGAGAGCTCCGAAGGTATTTACCCGAC
CCAGGAGTTTTCCGTACAGGATTCGCAAGCATGTCAAGAAGGACGAGGGC
AAGGGAGGGCAGTGGGGGAGGAGGATCATATGTACATAAAGCCAGTAGGT
CATGGCCCCTGCAATGACGGTCACGACGACGCTCGGGAAGTGAAAAAAGA
GGGCGAGAACGAGGCTATTCTCGTCTTATATGGCCGTCGGCGTGGCCTCA
GTGAGGCGTTGGTGCACCGGCTGGAGCTGGGTGTGCGGGACTACATCCTT
CCTTCTGCTCGTGGCAAAAAAGAGGACATAAATGAGGGAGGCGTGGCGGA
GGAGGAGGAGAACGAGAGGAATACGGTGCTCATACCTGGAGGACTCCAAG
AATGTCATTATGCATATGTCTGCCGTTTTGAGGCCCTGGCAGCGTGTCTC
GCCACACACTTCCTCAGCAAACTCCGTCCCGAGCTCTACGCAGCGCGCCA
ACTCCCTTCCTTCTCCGACGTGATGCGGACCGAGGGAATCCCCACTTCCT
CCTCCTCTTCCTCCCCCAAGACTGCTAGTAGCGGCACCATCACCACTGCC
ACTCCGTGTTGTCCTCCCGCGCGTACCGCGTACCGCTGCCTCTTTCAGGC
CCGTCCTCGTCCCCTCCCCTCCCGTCTCATGTTTCGCCCCGATGATAGGA
TGATGCCCTTCTACCACCTTCCTCCCTCCCATGTCCACCCCCTCTACCCC
TCTTTCCCTCATCCCCTCCACTACGCGTCTGGTGGTCTGGATGAAGAGAG
GACTGGTGAGAGGAGCGGGGCCGGGGAGGCGAGGCCGAGGTTCCTGCCTG
CGTTTGGGATGCCACCTTTGTGGTACCCGGGGAGACGGTTTTTCGGGGGT
GGGAGGGAGAGAGGAAGGAGAGGAGTCTGA

Synonyms

Publications