jgi.p|Nanoce1779_2|579904, mRNA_2313 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579904
Unique NamemRNA_2313
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length517
Alignment locationscaffold_5:6409..6925 +

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Properties
Property NameValue
TranscriptId579990
TrackFilteredModels2
ProteinId579904
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:6409..6925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579904gene_2313Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579904mRNA_2313-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2313CDS_2313Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2313 ID=mRNA_2313|Name=jgi.p|Nanoce1779_2|579904|organism=Nannochloropsis oceanica|type=mRNA|length=517bp
GAGACACCACTATGATGAATGACGTCCCAAATGCCATTCCTTGTCCCAAA
CCTCACCGTACACACTCTTTTTTTGGCATGTGGTATCCTCTCCGAATCGT
GTTCCATATTCATTTCTCGTCCCAAACTTTCTCGCCCCAAACCTCAAGAT
ACACACTGCCTATTAGTGACGTTGGATATGGGCTGCATATGTATTATGGG
TTGCCAAATACGGTGTGGTTGTGGGTGCTTTGTCTTTGAATCCCGTGCAA
GTCGAGCGACAATAACGAGTATATTTACGATTGTGGGCTTTGTATGCGGT
GCTTGTGGAATGCTTAATGGTGTAGCACAGTGTCATAATCCATCCTTTCC
TCCCATACAAGCCACTAAATAGCACTTTCTATGTTCTTCGCGAGGAGTAT
GAGCACTACACTCACTCTAGAATCAATGGCCACCACGTCTCCTGCGGCTA
ATTCCAAACATATCCGCCATTCTATCCTCCCACGACTTCCTCGACGAGTC
CCTCTTCCTCACCGTGT
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protein sequence of jgi.p|Nanoce1779_2|579904

>mRNA_2313-protein ID=mRNA_2313-protein|Name=jgi.p|Nanoce1779_2|579904|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MTSQMPFLVPNLTVHTLFLACGILSESCSIFISRPKLSRPKPQDTHCLLV
TLDMGCICIMGCQIRCGCGCFVFESRASRATITSIFTIVGFVCGACGMLN
GVAQCHNPSFPPIQAT
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mRNA from alignment at scaffold_5:6409..6925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2313 ID=mRNA_2313|Name=jgi.p|Nanoce1779_2|579904|organism=Nannochloropsis oceanica|type=mRNA|length=517bp|location=Sequence derived from alignment at scaffold_5:6409..6925+ (Nannochloropsis oceanica)
GAGACACCACTATGATGAATGACGTCCCAAATGCCATTCCTTGTCCCAAA
CCTCACCGTACACACTCTTTTTTTGGCATGTGGTATCCTCTCCGAATCGT
GTTCCATATTCATTTCTCGTCCCAAACTTTCTCGCCCCAAACCTCAAGAT
ACACACTGCCTATTAGTGACGTTGGATATGGGCTGCATATGTATTATGGG
TTGCCAAATACGGTGTGGTTGTGGGTGCTTTGTCTTTGAATCCCGTGCAA
GTCGAGCGACAATAACGAGTATATTTACGATTGTGGGCTTTGTATGCGGT
GCTTGTGGAATGCTTAATGGTGTAGCACAGTGTCATAATCCATCCTTTCC
TCCCATACAAGCCACTAAATAGCACTTTCTATGTTCTTCGCGAGGAGTAT
GAGCACTACACTCACTCTAGAATCAATGGCCACCACGTCTCCTGCGGCTA
ATTCCAAACATATCCGCCATTCTATCCTCCCACGACTTCCTCGACGAGTC
CCTCTTCCTCACCGTGT
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Coding sequence (CDS) from alignment at scaffold_5:6409..6925+

>mRNA_2313 ID=mRNA_2313|Name=jgi.p|Nanoce1779_2|579904|organism=Nannochloropsis oceanica|type=CDS|length=350bp|location=Sequence derived from alignment at scaffold_5:6409..6925+ (Nannochloropsis oceanica)
ATGACGTCCCAAATGCCATTCCTTGTCCCAAACCTCACCGTACACACTCT
TTTTTTGGCATGTGGTATCCTCTCCGAATCGTGTTCCATATTCATTTCTC
GTCCCAAACTTTCTCGCCCCAAACCTCAAGATACACACTGCCTATTAGTG
ACGTTGGATATGGGCTGCATATGTATTATGGGTTGCCAAATACGGTGTGG
TTGTGGGTGCTTTGTCTTTGAATCCCGTGCAAGTCGAGCGACAATAACGA
GTATATTTACGATTGTGGGCTTTGTATGCGGTGCTTGTGGAATGCTTAAT
GGTGTAGCACAGTGTCATAATCCATCCTTTCCTCCCATACAAGCCACTAA
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Synonyms
Publications