jgi.p|Nanoce1779_2|579899, mRNA_2312 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579899
Unique Name	mRNA_2312
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1480
Alignment location	scaffold_5:3985..5644 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579985
Track	FilteredModels2
ProteinId	579899

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:3985..5644 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579899	gene_2312	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579899	mRNA_2312-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2312	CDS_2312	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:3985..5644+
coding sequence from alignment at scaffold_5:3985..5644+

mRNA sequence

>mRNA_2312 ID=mRNA_2312|Name=jgi.p|Nanoce1779_2|579899|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
TCTGAGCACCAGGCGTACGGCGACGCGGCTTTCGGCATCAGATTCCCGCC
GACGCCCCCCTCCTTCCCTCCCTCCTTCCCGCCCTCAAACACCACCTGCA
CGGGCACCGGTCTGGACGAGACCGAAGACATCGATTTCACCCTCGTGTCC
CAATCCTCCCCCGACCGTCTTTGGATGCTCCCTCACATCTGCCAGCGCTG
GCAAGGACCCATAGTCCTGGCCATCTACATGCTGAACTCCACCTCCGCCG
ACCATACCTTCCTCTCCGAGATCACTGCCTGTCCGCACGCGCGCATCTTG
CAGGTCTCGCCGCCCCCCTCCTCTCTCTCCGCCTCCTCCGCCCCCCGCTC
CTCCTCTTCGGCCTACTGGGGCTCGCCGGATCACTATCCCGTCAATGCCC
TGCGAAATCTGGCGATCGCAGAGGTTACGACCACGCACTTCCTTCTGACG
GACATGGACCTCTGGCCCTCCCTCCACCTCTACTCCCTCCTCAAGCACCT
GTCGTCGAAGAACGGCAAGGGAGGGAGGGAGGGAGGGATGGAGGGAGGGG
GAGGAGGCGAGACCAGGGAGCGATTCCTGGATCCGCTGCAGGCGTTGGTG
GTGCCCGCGTTTGGCTACCTGGGAAAGGCGACGACGGCAGAGCAAGCACG
GGGGGAGAAGGGGGGAAAGGGCGAGGCAGGGAGGGAGGAGCGGGTGGAGG
GCATGCCGGAGGAGCAGCAGGGGCTGCTGACGTGCTTGGAGAGAGGGGAA
TGCCTCGTCTTTGACTCGCAGTACAATGTGCACGGGCACGGGAGCACAGA
CACAGTGTACTGGACAAGCAGGCAGGGCGAGGACGAGATCAAGGATATTC
CTTGTTTCTTGTCGAACAGATACGAGCCTTACGTGGTCCTTCGCCGCTGC
CCCACCACCCCTCCCTTCGCCGAGGCCTTCACAGGCTATGGCAAGAACAA
AATTGAGCACATTGCTCACCTCCGTTACCGAGGATTCACTTTCTCAGTCC
TCCCCCCCCAGGCCTTCCTGGTACATTTCCCCCATCCAACGAGTAGGAGC
AAGAAGTCCTGGTTGACAGGAGGGCGGGAGGAAGGGAAGGCGGGATGGAG
GGAGCGGATGGACGAGATGTACAGCCGGTTTTTGGGTTGGGCGTCCCAGG
AGAAGGCATCCAGAGCGAGTAAAATCACCCATTTGTGCCCTCCCTCCAAC
CCAACGGCTGTGAAGCCATAGAGATAGATGGATAGGAAGGAGGAGAGAGG
GAGGGAGGGACATATTTAGAAATTGGATCCAGGTATAACAGCGTAAGCCC
TCGAATGTTGTCGTTTAGAAGTGAAAGGGAAGAGAGGAGATAAAACTAAA
TATTTAATACGGAAGGAGAATAAGACCGATTCAATATATCAAAGGATTAA
TAAATCAATCACTCAAAAGTCAAAAACTAAATATACAAGACAAAGAATCA
AAAAATCTACCGATCAATCAAACAAAGAAA

protein sequence of jgi.p|Nanoce1779_2|579899

>mRNA_2312-protein ID=mRNA_2312-protein|Name=jgi.p|Nanoce1779_2|579899|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MLPHICQRWQGPIVLAIYMLNSTSADHTFLSEITACPHARILQVSPPPSS
LSASSAPRSSSSAYWGSPDHYPVNALRNLAIAEVTTTHFLLTDMDLWPSL
HLYSLLKHLSSKNGKGGREGGMEGGGGGETRERFLDPLQALVVPAFGYLG
KATTAEQARGEKGGKGEAGREERVEGMPEEQQGLLTCLERGECLVFDSQY
NVHGHGSTDTVYWTSRQGEDEIKDIPCFLSNRYEPYVVLRRCPTTPPFAE
AFTGYGKNKIEHIAHLRYRGFTFSVLPPQAFLVHFPHPTSRSKKSWLTGG
REEGKAGWRERMDEMYSRFLGWASQEKASRASKITHLCPPSNPTAVKP*

mRNA from alignment at scaffold_5:3985..5644+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2312 ID=mRNA_2312|Name=jgi.p|Nanoce1779_2|579899|organism=Nannochloropsis oceanica|type=mRNA|length=1660bp|location=Sequence derived from alignment at scaffold_5:3985..5644+ (Nannochloropsis oceanica)
TCTGAGCACCAGGCGTACGGCGACGCGGCTTTCGGCATCAGATTCCCGCC
GACGCCCCCCTCCTTCCCTCCCTCCTTCCCGCCCTCAAACACCACCTGCA
CGGGCACCGGTCTGGACGAGACCGAAGACATCGATTTCACCCTCGTGTCC
CAATCCTCCCCCGACCGTCTTTGGATGCTCCCTCACATCTGCCAGCGCTG
GCAAGGACCCATAGTCCTGGCCATCTACATGCTGAACTCCACCTCCGCCG
ACCATACCTTCCTCTCCGAGATCACTGCCTGTCCGCACGCGCGCATCTTG
CAGGTCTCGCCGCCCCCCTCCTCTCTCTCCGCCTCCTCCGCCCCCCGCTC
CTCCTCTTCGGCCTACTGGGGCTCGCCGGATCACTATCCCGTCAATGCCC
TGCGAAATCTGGCGATCGCAGAGGTTACGACCACGCACTTCCTTCTGACG
GACATGGACCTCTGGCCCTCCCTCCACCTCTACTCCCTCCTCAAGCACCT
GTCGTCGAAGAACGGCAAGGGAGGGAGGGAGGGAGGGATGGAGGGAGGGG
GAGGAGGCGAGACCAGGGAGCGATTCCTGGATCCGCTGCAGGCGTTGGTG
GTGCCCGCGTTTGGCTACCTGGGAAAGGCGACGACGGCAGAGCAAGCACG
GGGGGAGAAGGGGGGAAAGGGCGAGGCAGGGAGGGAGGAGCGGGTGGAGG
GCATGCCGGAGGAGCAGCAGGGGCTGCTGACGTGCTTGGAGAGAGGGGAA
TGCCTCGTCTTTGACTCGCAGTACAATGTGCACGGGCACGGGAGCACAGA
CACAGTGTACTGGACAAGCAGGCAGGGCGAGGACGAGATCAAGGATATTC
CTTGTTTCTTGTCGAACAGGTGGGGGGACGAGGGAGGGAGGGAGGGAGGG
AGGGAGGTGTCAGGCACGGAGCTGATCCCTCCCCTGCATCAGACAAGCGT
TTCTCCACGGTTCTCGTGACCTCATTTCTCTCTTGCTCCCTACCTCCCTG
CCTCTTTCTCTTCCTCTTTATCTCCCTCTTTCCCTCCTCCACCCCTCAGA
TACGAGCCTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGC
CGAGGCCTTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACC
TCCGTTACCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTG
GTACATTTCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGG
AGGGCGGGAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGT
ACAGCCGGTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGAGT
AAAATCACCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATA
GAGATAGATGGATAGGAAGGAGGAGAGAGGGAGGGAGGGACATATTTAGA
AATTGGATCCAGGTATAACAGCGTAAGCCCTCGAATGTTGTCGTTTAGAA
GTGAAAGGGAAGAGAGGAGATAAAACTAAATATTTAATACGGAAGGAGAA
TAAGACCGATTCAATATATCAAAGGATTAATAAATCAATCACTCAAAAGT
CAAAAACTAAATATACAAGACAAAGAATCAAAAAATCTACCGATCAATCA
AACAAAGAAA

Coding sequence (CDS) from alignment at scaffold_5:3985..5644+

>mRNA_2312 ID=mRNA_2312|Name=jgi.p|Nanoce1779_2|579899|organism=Nannochloropsis oceanica|type=CDS|length=2094bp|location=Sequence derived from alignment at scaffold_5:3985..5644+ (Nannochloropsis oceanica)
ATGCTCCCTCACATCTGCCAGCGCTGGCAAGGACCCATAGTCCTGGCCAT
CTACATGCTGAACTCCACCTCCGCCGACCATACCTTCCTCTCCGAGATCA
CTGCCTGTCCGCACGCGCGCATCTTGCAGGTCTCGCCGCCCCCCTCCTCT
CTCTCCGCCTCCTCCGCCCCCCGCTCCTCCTCTTCGGCCTACTGGGGCTC
GCCGGATCACTATCCCGTCAATGCCCTGCGAAATCTGGCGATCGCAGAGG
TTACGACCACGCACTTCCTTCTGACGGACATGGACCTCTGGCCCTCCCTC
CACCTCTACTCCCTCCTCAAGCACCTGTCGTCGAAGAACGGCAAGGGAGG
GAGGGAGGGAGGGATGGAGGGAGGGGGAGGAGGCGAGACCAGGGAGCGAT
TCCTGGATCCGCTGCAGGCGTTGGTGGTGCCCGCGTTTGGCTACCTGGGA
AAGGCGACGACGGCAGAGCAAGCACGGGGGGAGAAGGGGGGAAAGGGCGA
GGCAGGGAGGGAGGAGCGGGTGGAGGGCATGCCGGAGGAGCAGCAGGGGC
TGCTGACGTGCTTGGAGAGAGGGGAATGCCTCGTCTTTGACTCGCAGTAC
AATGTGCACGGGCACGGGAGCACAGACACAGTGTACTGGACAAGCAGGCA
GGGCGAGGACGAGATCAAGGATATTCCTTGTTTCTTGTCGAACAGATACG
AGCCTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGCCGAG
GCCTTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACCTCCG
TTACCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTGGTAC
ATTTCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGGAGGG
CGGGAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGTACAG
CCGGTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGAGTAAAA
TCACCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATAGATG
CTCCCTCACATCTGCCAGCGCTGGCAAGGACCCATAGTCCTGGCCATCTA
CATGCTGAACTCCACCTCCGCCGACCATACCTTCCTCTCCGAGATCACTG
CCTGTCCGCACGCGCGCATCTTGCAGGTCTCGCCGCCCCCCTCCTCTCTC
TCCGCCTCCTCCGCCCCCCGCTCCTCCTCTTCGGCCTACTGGGGCTCGCC
GGATCACTATCCCGTCAATGCCCTGCGAAATCTGGCGATCGCAGAGGTTA
CGACCACGCACTTCCTTCTGACGGACATGGACCTCTGGCCCTCCCTCCAC
CTCTACTCCCTCCTCAAGCACCTGTCGTCGAAGAACGGCAAGGGAGGGAG
GGAGGGAGGGATGGAGGGAGGGGGAGGAGGCGAGACCAGGGAGCGATTCC
TGGATCCGCTGCAGGCGTTGGTGGTGCCCGCGTTTGGCTACCTGGGAAAG
GCGACGACGGCAGAGCAAGCACGGGGGGAGAAGGGGGGAAAGGGCGAGGC
AGGGAGGGAGGAGCGGGTGGAGGGCATGCCGGAGGAGCAGCAGGGGCTGC
TGACGTGCTTGGAGAGAGGGGAATGCCTCGTCTTTGACTCGCAGTACAAT
GTGCACGGGCACGGGAGCACAGACACAGTGTACTGGACAAGCAGGCAGGG
CGAGGACGAGATCAAGGATATTCCTTGTTTCTTGTCGAACAGATACGAGC
CTTACGTGGTCCTTCGCCGCTGCCCCACCACCCCTCCCTTCGCCGAGGCC
TTCACAGGCTATGGCAAGAACAAAATTGAGCACATTGCTCACCTCCGTTA
CCGAGGATTCACTTTCTCAGTCCTCCCCCCCCAGGCCTTCCTGGTACATT
TCCCCCATCCAACGAGTAGGAGCAAGAAGTCCTGGTTGACAGGAGGGCGG
GAGGAAGGGAAGGCGGGATGGAGGGAGCGGATGGACGAGATGTACAGCCG
GTTTTTGGGTTGGGCGTCCCAGGAGAAGGCATCCAGAGCGAGTAAAATCA
CCCATTTGTGCCCTCCCTCCAACCCAACGGCTGTGAAGCCATAG

Synonyms

Publications