jgi.p|Nanoce1779_2|661372, mRNA_2311 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|661372
Unique NamemRNA_2311
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length724
Alignment locationscaffold_5:107..1498 -

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Properties
Property NameValue
TranscriptId661458
TrackFilteredModels2
ProteinId661372
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:107..1498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661372gene_2311Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|661372mRNA_2311-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2311CDS_2311Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2311 ID=mRNA_2311|Name=jgi.p|Nanoce1779_2|661372|organism=Nannochloropsis oceanica|type=mRNA|length=724bp
GGGGGCCCTGGCACTTACCAAGTCATTCACAATTGAGAAGACAGCGCTCG
CTTCCGATCGACGGTCGGGTATTTCCTCTTAATTTAATCCAAACCTATGC
GATATCCCTTAATTGCCACGCCCTCTTCGAACAGCGCGACCAGCAATTCG
AATTCATGACGGGGAGAGACATGGGGCTTGGAACCGAATGGGGCAACGTC
AAAGACCTAGTCAGCAGGCAGCAGCAGCAGCAGCAGCAGCGGCCGCGGCG
GACTTAAGACAGTGGGATTGCTATACACTATTACGGCCACCCGTGCTCCA
CCAATCCGGGGACATGGTCGAGGTGTGCGTTGCTCAAGTCCCAGGCGCCG
ACGCCTCGACTGACTTCATCGCGGCCTACGCCCCGGCTGACGTTGACCTC
CACGCCACGGCCCCGGTCAAGCTCAAGTACCCCCTCCACGAGGAGACCTC
GGCCTCCCTCCCTGCCTCCCTCTACTCCCTCTACCGGCCAGGGCTGCGTC
TCCTTCCGCCTGCTGAATCTCCGCGACGCCTACTCGTTCGCGGTAATGCG
AGGGAATGTGACCTCCCCTTGCTGCTGGCCACGTCAGCCGCTGTGGGCTT
CAAGGAGCCGAACGAGGTCCACCTGGCGCTGACTGGAAACGACGGAGAGG
TAGATGAGCGTCACATGGGTCACCCGCGATACCAGAGCGCCCGTCGTGCA
GTGGTGGGCCGCCATGCCGGATGA
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protein sequence of jgi.p|Nanoce1779_2|661372

>mRNA_2311-protein ID=mRNA_2311-protein|Name=jgi.p|Nanoce1779_2|661372|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MGQRQRPSQQAAAAAAAAAAADLRQWDCYTLLRPPVLHQSGDMVEVCVAQ
VPGADASTDFIAAYAPADVDLHATAPVKLKYPLHEETSASLPASLYSLYR
PGLRLLPPAESPRRLLVRGNARECDLPLLLATSAAVGFKEPNEVHLALTG
NDGEVDERHMGHPRYQSARRAVVGRHAG*
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mRNA from alignment at scaffold_5:107..1498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2311 ID=mRNA_2311|Name=jgi.p|Nanoce1779_2|661372|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at scaffold_5:107..1498- (Nannochloropsis oceanica)
GGGGGCCCTGGCACTTACCAAGTCATTCACAATTGAGAAGACAGCGCTCG
CTTCCGATCGACGGTCGGGTATTTCCTCTTAATTTAATCCAAACCTATGC
GATATCCCTTAATTGCCACGCCCTCTTCGAACAGCGCGACCAGCAATTCG
AATTCATGACGGGGAGAGACATGGGGCTTGGAACCGAATGGGGCAACGTC
AAAGACCTAGTCAGCAGGCAGCAGCAGCAGCAGCAGCAGCGGCCGCGGCG
GACTTAAGACAGTGGGATTGCTATACACTATTACGGCCACCCGTGCTCCA
CCAATCCGGGGACATGGTCGAGGTAGGGCGGGGGGAATGGAAAGGAGGGT
TGGAGAGGAAAGAGATGTCGGAGGCAGTGCAGCAGATGCACTGAGATACA
ATTTGTCGATCTACTGATTGATCTGTCGTTTTTACACCTTCTTCCGATCC
CTTCACAGGTGTGCGTTGCTCAAGTCCCAGGCGCCGACGCCTCGACTGAC
TTCATCGCGGCCTACGCCCCGGCTGACGTTGACCTCCACGCCACGGCCCC
GGTCAAGGTGAGGAGGGAGGGAGGGAGGGAGGAAGATAGAGGTGCGGGGA
TTGAAGGAGAGGATGGGAAGGAAGAAAGAAGGGAAAGGGAGTGAGGGACA
GATGGACGGAAGGAGGGACGGTAATGAGGATGGAGAGTGAGGCGCAGGGG
CTCTTGTGGACACTCCCATCCCATGCTCTAATTATCGACTTTGTTCTTCG
TCATCTCCTCCTGGCACGACAGCTCAAGTACCCCCTCCACGAGGAGACCT
CGGCCTCCCTCCCTGCCTCCCTCTACTCCCTCTACCGGCCAGGGCTGCGT
CTCCTTCCGCCTGCTGAATCTCCGCGACGCCTACTCGTTCGCGGTAATGC
GAGGGAATGTGACCTCCCCTTGCTGCTGGCCACGTCAGCCGCTGTGGGCT
TCAAGGAGCCGAACGAGGTAGGGTGGGAGGGAGGGAGGCAAGGAAGACGG
GGAAAAGAGCATGCTAAGAACACTCTGGTCCCTTTTGTCTTCACACACAC
ACACAAATATATAGACACACCATACACGCTCTCTCTCTTCTTCTTTCTCT
CTTTCTTTCTTTCTTCGTTCTCTCTCACTCTCTCTCTTTCTCTCCGTTAA
ACACAGGTCCACCTGGCGCTGACTGGAAACGACGGAGAGGTAGGTACCTG
CCATCTGTCCCTCTCTCCTTCCCTCCCTCCCTCCCCTTCACCCTATTTGC
TACTACTGGGAAGCTCATCAGCCACACTTCCCCTCTCCTTCATTCCCTCC
CTCCCGCCCTCCGACTCTCAGATGAGCGTCACATGGGTCACCCGCGATAC
CAGAGCGCCCGTCGTGCAGTGGTGGGCCGCCATGCCGGATGA
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Coding sequence (CDS) from alignment at scaffold_5:107..1498-

>mRNA_2311 ID=mRNA_2311|Name=jgi.p|Nanoce1779_2|661372|organism=Nannochloropsis oceanica|type=CDS|length=2685bp|location=Sequence derived from alignment at scaffold_5:107..1498- (Nannochloropsis oceanica)
ATGAGCGTCACATGGGTCACCCGCGATACCAGAGCGCCCGTCGTGCAGTG
GTGGGCCGCCATGCCGGATGAGTCCACCTGGCGCTGACTGGAAACGACGG
AGAGGTAGCTCAAGTACCCCCTCCACGAGGAGACCTCGGCCTCCCTCCCT
GCCTCCCTCTACTCCCTCTACCGGCCAGGGCTGCGTCTCCTTCCGCCTGC
TGAATCTCCGCGACGCCTACTCGTTCGCGGTAATGCGAGGGAATGTGACC
TCCCCTTGCTGCTGGCCACGTCAGCCGCTGTGGGCTTCAAGGAGCCGAAC
GAGGTGTGCGTTGCTCAAGTCCCAGGCGCCGACGCCTCGACTGACTTCAT
CGCGGCCTACGCCCCGGCTGACGTTGACCTCCACGCCACGGCCCCGGTCA
AGATGGGGCAACGTCAAAGACCTAGTCAGCAGGCAGCAGCAGCAGCAGCA
GCAGCGGCCGCGGCGGACTTAAGACAGTGGGATTGCTATACACTATTACG
GCCACCCGTGCTCCACCAATCCGGGGACATGGTCGAGATGAGCGTCACAT
GGGTCACCCGCGATACCAGAGCGCCCGTCGTGCAGTGGTGGGCCGCCATG
CCGGATGAGTCCACCTGGCGCTGACTGGAAACGACGGAGAGGTAGCTCAA
GTACCCCCTCCACGAGGAGACCTCGGCCTCCCTCCCTGCCTCCCTCTACT
CCCTCTACCGGCCAGGGCTGCGTCTCCTTCCGCCTGCTGAATCTCCGCGA
CGCCTACTCGTTCGCGGTAATGCGAGGGAATGTGACCTCCCCTTGCTGCT
GGCCACGTCAGCCGCTGTGGGCTTCAAGGAGCCGAACGAGGTGTGCGTTG
CTCAAGTCCCAGGCGCCGACGCCTCGACTGACTTCATCGCGGCCTACGCC
CCGGCTGACGTTGACCTCCACGCCACGGCCCCGGTCAAGATGGGGCAACG
TCAAAGACCTAGTCAGCAGGCAGCAGCAGCAGCAGCAGCAGCGGCCGCGG
CGGACTTAAGACAGTGGGATTGCTATACACTATTACGGCCACCCGTGCTC
CACCAATCCGGGGACATGGTCGAGATGAGCGTCACATGGGTCACCCGCGA
TACCAGAGCGCCCGTCGTGCAGTGGTGGGCCGCCATGCCGGATGAGTCCA
CCTGGCGCTGACTGGAAACGACGGAGAGGTAGCTCAAGTACCCCCTCCAC
GAGGAGACCTCGGCCTCCCTCCCTGCCTCCCTCTACTCCCTCTACCGGCC
AGGGCTGCGTCTCCTTCCGCCTGCTGAATCTCCGCGACGCCTACTCGTTC
GCGGTAATGCGAGGGAATGTGACCTCCCCTTGCTGCTGGCCACGTCAGCC
GCTGTGGGCTTCAAGGAGCCGAACGAGGTGTGCGTTGCTCAAGTCCCAGG
CGCCGACGCCTCGACTGACTTCATCGCGGCCTACGCCCCGGCTGACGTTG
ACCTCCACGCCACGGCCCCGGTCAAGATGGGGCAACGTCAAAGACCTAGT
CAGCAGGCAGCAGCAGCAGCAGCAGCAGCGGCCGCGGCGGACTTAAGACA
GTGGGATTGCTATACACTATTACGGCCACCCGTGCTCCACCAATCCGGGG
ACATGGTCGAGATGAGCGTCACATGGGTCACCCGCGATACCAGAGCGCCC
GTCGTGCAGTGGTGGGCCGCCATGCCGGATGAGTCCACCTGGCGCTGACT
GGAAACGACGGAGAGGTAGCTCAAGTACCCCCTCCACGAGGAGACCTCGG
CCTCCCTCCCTGCCTCCCTCTACTCCCTCTACCGGCCAGGGCTGCGTCTC
CTTCCGCCTGCTGAATCTCCGCGACGCCTACTCGTTCGCGGTAATGCGAG
GGAATGTGACCTCCCCTTGCTGCTGGCCACGTCAGCCGCTGTGGGCTTCA
AGGAGCCGAACGAGGTGTGCGTTGCTCAAGTCCCAGGCGCCGACGCCTCG
ACTGACTTCATCGCGGCCTACGCCCCGGCTGACGTTGACCTCCACGCCAC
GGCCCCGGTCAAGATGGGGCAACGTCAAAGACCTAGTCAGCAGGCAGCAG
CAGCAGCAGCAGCAGCGGCCGCGGCGGACTTAAGACAGTGGGATTGCTAT
ACACTATTACGGCCACCCGTGCTCCACCAATCCGGGGACATGGTCGAGAT
GAGCGTCACATGGGTCACCCGCGATACCAGAGCGCCCGTCGTGCAGTGGT
GGGCCGCCATGCCGGATGAGTCCACCTGGCGCTGACTGGAAACGACGGAG
AGGTAGCTCAAGTACCCCCTCCACGAGGAGACCTCGGCCTCCCTCCCTGC
CTCCCTCTACTCCCTCTACCGGCCAGGGCTGCGTCTCCTTCCGCCTGCTG
AATCTCCGCGACGCCTACTCGTTCGCGGTAATGCGAGGGAATGTGACCTC
CCCTTGCTGCTGGCCACGTCAGCCGCTGTGGGCTTCAAGGAGCCGAACGA
GGTGTGCGTTGCTCAAGTCCCAGGCGCCGACGCCTCGACTGACTTCATCG
CGGCCTACGCCCCGGCTGACGTTGACCTCCACGCCACGGCCCCGGTCAAG
ATGGGGCAACGTCAAAGACCTAGTCAGCAGGCAGCAGCAGCAGCAGCAGC
AGCGGCCGCGGCGGACTTAAGACAGTGGGATTGCTATACACTATTACGGC
CACCCGTGCTCCACCAATCCGGGGACATGGTCGAG
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Synonyms
Publications