jgi.p|Nanoce1779_2|637280, mRNA_2310 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|637280
Unique Name	mRNA_2310
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	492
Alignment location	scaffold_4:1370882..1372673 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	637366
Track	FilteredModels2
ProteinId	637280

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1370882..1372673 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637280	gene_2310	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|637280	mRNA_2310-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2310	CDS_2310	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1370882..1372673+
coding sequence from alignment at scaffold_4:1370882..1372673+

mRNA sequence

>mRNA_2310 ID=mRNA_2310|Name=jgi.p|Nanoce1779_2|637280|organism=Nannochloropsis oceanica|type=mRNA|length=492bp
ATGACACCGGCCGAGCGCGCGCTGTACCCGACGCAGTGCCAGCGACAAGT
CTACCTCCAGGTGCTGGCCTGGAACGAGCGTCTGATTCTTTCCGGGAGGT
GGCTGCAGGCTCTCAAGGCGCAGGCTGCAATGCTCGTGGCAGCCGCGGGA
GGGACGAGTCTGACGACCGTCCTCTCCGCGTCTGCGTCGATGGGCAAGAA
CTCACTGGCCAGTGCCCTGGTCCGACTCTTGGGTGGAAAGGAAAATGCGG
AGGGCTCGCCTTATGCCGTCGAACTAGAGGACATCCTCGCCTGGGTGGGG
CGGCTGGGCTTGGAGCCGCTGCCGAACGGAGGCGTCATTCCAGTGGTGGA
GGAGATGGCCTCGACCATCATCAGCTATGCCCTATCTTGCCAGGAATACC
GCTCGCGCTTCCGGGAGTTCCAGACGCTGGTGCGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGGATGGCGAGCCCGCACGCTGA

protein sequence of jgi.p|Nanoce1779_2|637280

>mRNA_2310-protein ID=mRNA_2310-protein|Name=jgi.p|Nanoce1779_2|637280|organism=Nannochloropsis oceanica|type=polypeptide|length=164bp
MTPAERALYPTQCQRQVYLQVLAWNERLILSGRWLQALKAQAAMLVAAAG
GTSLTTVLSASASMGKNSLASALVRLLGGKENAEGSPYAVELEDILAWVG
RLGLEPLPNGGVIPVVEEMASTIISYALSCQEYRSRFREFQTLVRREGGR
EGGREGGDGEPAR*

mRNA from alignment at scaffold_4:1370882..1372673+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2310 ID=mRNA_2310|Name=jgi.p|Nanoce1779_2|637280|organism=Nannochloropsis oceanica|type=mRNA|length=1792bp|location=Sequence derived from alignment at scaffold_4:1370882..1372673+ (Nannochloropsis oceanica)
ATGACACCGGCCGAGCGCGCGCTGTACCCGACGCAGTGCCAGCGACAAGT
CTACCTCCAGGTCGGAAGGGAGGAAGGGAGGAAGGGTGGGAGAGAAGAAG
GACAGTTTTCGAGCCCCTTTTTGCTCATCACTGCATTTGTCGTTTTCCTC
TATTCAGGTGCTGGCCTGGAACGAGCGTCTGATTCTTTCCGGGAGGTGGC
TGCAGGCTCTCAAGGCGCAGGCTGCAATGCTCGTGGCAGCCGCGGGAGGG
ACGAGGTGGGTAGGGTGGGATGGAGGGAGGGGGGGGAGGAAGGGCTAGGG
GGGGACAATTGAGACTCTGACAAAGGCCTCGCATCCCTCCACGCACAGCT
TAAGCACCCCCCCGTCTGCCTTTTCGCAGCAGCTGCAGCAGCAGCTGCAG
CCACTCCTGTTGGGGCGGGGAAAAAGGGAAAACAGAAGGAGAAGGAGGTG
GAGAAAGAGCGAGGTATATGAAGTCAAGAAACAGAAGAGAGGGAGGGAGG
GGGAGGGAGGGAGGGAGAGAGAAAGGGAAGTAGGGAGAGAGTAATTTCTG
ATTTATGAGCGGATGCTTATATCCCCTTATTTCCTGACATTTTCCACCGC
CTCTCATACACCTTCTCCCCCCCTCCCCCCTCTCACACAGGAGTCTCTTC
CCTCAATCCTTCTCGTTCCATTGTCTCCGACGAAGGCCAGGGCGACGAGG
ACGAGGGGGGAGGACGGACAGGAAGGGGAGGAGGCAGGGGGGGAGGAAGA
AGACATGCTCCTCTTTCCTCCCTCCGTGGAAGAGGAGGAGGAAGAACGCG
CAGCCGCCGCCCTCCACCTCCTCCTCCTCCACTTCCTCCTCCTCCTCCTC
CCAAAACCGCAAGCTGACAAGGAAGGACATAGACTCCCGCCTCATGCTCC
CACCACCGCCCAAGCCCCGTGTCGCCATCAGCGGCAACAGCAGCGGAGTC
GACCCTTCCCTCCCTCCCCCACCCCTCCCCACGCTGCGTTAAGCCACACA
CACAGTCTGACGACCGTCCTCTCCGCGTCTGCGTCGATGGGCAAGAACTC
ACTGGCCAGTGCCCTGGTCCGACTCTTGGGTGGAAAGGTGAGGGAGGGAG
GGAGGGATGGGGAGAGAAAATTGTCATTCCCTGTTATGAGGATTATGGAG
GGGAGAGGGAGCAAGGGATGATGGAAAGCTTACAGTTGGTCGCTGCCTGG
GAGGGAAGGAGGAGAGCTTGGGAGGAGGAATGCGCACGATTAAGTTGTAA
TTTTCATGATTATTATTGTCTTTTAGGAAAATGCGGAGGGCTCGCCTTAT
GCCGTCGAACTAGAGGACATCCTCGCCTGGGTGGGGCGGCTGGGTAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAAGAAAGAGGGTGTGTATCAGGT
GGATGAGAGCGATAATTTCCTTTTTTATCTTGACAACCTCAGGCTTGGAG
CCGCTGCCGAACGGAGGCGTCATTCCAGTGGTGGAGGAGATGGTAAGCGT
AGCACACACACTCTCGCCCTCTCTCTCCTCCCTCCCTCCCTCCCCTTCCC
TTTTCACCCCCCCTCATTTTCTTTTCTCTCTCCTCCCTCCCCTCCCTCCC
TCCCTCCCTTTCCCTCCCTCTCCCCTCCTCTCCTCCCTCCCTCCCTCTTC
CTCCCAGGCCTCGACCATCATCAGCTATGCCCTATCTTGCCAGGAATACC
GCTCGCGCTTCCGGGAGTTCCAGACGCTGGTGCGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGGATGGCGAGCCCGCACGCTGA

Coding sequence (CDS) from alignment at scaffold_4:1370882..1372673+

>mRNA_2310 ID=mRNA_2310|Name=jgi.p|Nanoce1779_2|637280|organism=Nannochloropsis oceanica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_4:1370882..1372673+ (Nannochloropsis oceanica)
ATGACACCGGCCGAGCGCGCGCTGTACCCGACGCAGTGCCAGCGACAAGT
CTACCTCCAGGTGCTGGCCTGGAACGAGCGTCTGATTCTTTCCGGGAGGT
GGCTGCAGGCTCTCAAGGCGCAGGCTGCAATGCTCGTGGCAGCCGCGGGA
GGGACGAGTCTGACGACCGTCCTCTCCGCGTCTGCGTCGATGGGCAAGAA
CTCACTGGCCAGTGCCCTGGTCCGACTCTTGGGTGGAAAGGAAAATGCGG
AGGGCTCGCCTTATGCCGTCGAACTAGAGGACATCCTCGCCTGGGTGGGG
CGGCTGGGCTTGGAGCCGCTGCCGAACGGAGGCGTCATTCCAGTGGTGGA
GGAGATGGCCTCGACCATCATCAGCTATGCCCTATCTTGCCAGGAATACC
GCTCGCGCTTCCGGGAGTTCCAGACGCTGGTGCGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGAGGGGATGGCGAGCCCGCACGCTGAATGACACC
GGCCGAGCGCGCGCTGTACCCGACGCAGTGCCAGCGACAAGTCTACCTCC
AGGTGCTGGCCTGGAACGAGCGTCTGATTCTTTCCGGGAGGTGGCTGCAG
GCTCTCAAGGCGCAGGCTGCAATGCTCGTGGCAGCCGCGGGAGGGACGAG
TCTGACGACCGTCCTCTCCGCGTCTGCGTCGATGGGCAAGAACTCACTGG
CCAGTGCCCTGGTCCGACTCTTGGGTGGAAAGGAAAATGCGGAGGGCTCG
CCTTATGCCGTCGAACTAGAGGACATCCTCGCCTGGGTGGGGCGGCTGGG
CTTGGAGCCGCTGCCGAACGGAGGCGTCATTCCAGTGGTGGAGGAGATGG
CCTCGACCATCATCAGCTATGCCCTATCTTGCCAGGAATACCGCTCGCGC
TTCCGGGAGTTCCAGACGCTGGTGCGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGAGGGGATGGCGAGCCCGCACGCTGAATGACACCGGCCGAGC
GCGCGCTGTACCCGACGCAGTGCCAGCGACAAGTCTACCTCCAGGTGCTG
GCCTGGAACGAGCGTCTGATTCTTTCCGGGAGGTGGCTGCAGGCTCTCAA
GGCGCAGGCTGCAATGCTCGTGGCAGCCGCGGGAGGGACGAGTCTGACGA
CCGTCCTCTCCGCGTCTGCGTCGATGGGCAAGAACTCACTGGCCAGTGCC
CTGGTCCGACTCTTGGGTGGAAAGGAAAATGCGGAGGGCTCGCCTTATGC
CGTCGAACTAGAGGACATCCTCGCCTGGGTGGGGCGGCTGGGCTTGGAGC
CGCTGCCGAACGGAGGCGTCATTCCAGTGGTGGAGGAGATGGCCTCGACC
ATCATCAGCTATGCCCTATCTTGCCAGGAATACCGCTCGCGCTTCCGGGA
GTTCCAGACGCTGGTGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGGATGGCGAGCCCGCACGCTGAATGACACCGGCCGAGCGCGCGCTG
TACCCGACGCAGTGCCAGCGACAAGTCTACCTCCAGGTGCTGGCCTGGAA
CGAGCGTCTGATTCTTTCCGGGAGGTGGCTGCAGGCTCTCAAGGCGCAGG
CTGCAATGCTCGTGGCAGCCGCGGGAGGGACGAGTCTGACGACCGTCCTC
TCCGCGTCTGCGTCGATGGGCAAGAACTCACTGGCCAGTGCCCTGGTCCG
ACTCTTGGGTGGAAAGGAAAATGCGGAGGGCTCGCCTTATGCCGTCGAAC
TAGAGGACATCCTCGCCTGGGTGGGGCGGCTGGGCTTGGAGCCGCTGCCG
AACGGAGGCGTCATTCCAGTGGTGGAGGAGATGGCCTCGACCATCATCAG
CTATGCCCTATCTTGCCAGGAATACCGCTCGCGCTTCCGGGAGTTCCAGA
CGCTGGTGCGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGAT
GGCGAGCCCGCACGCTGAATGACACCGGCCGAGCGCGCGCTGTACCCGAC
GCAGTGCCAGCGACAAGTCTACCTCCAGGTGCTGGCCTGGAACGAGCGTC
TGATTCTTTCCGGGAGGTGGCTGCAGGCTCTCAAGGCGCAGGCTGCAATG
CTCGTGGCAGCCGCGGGAGGGACGAGTCTGACGACCGTCCTCTCCGCGTC
TGCGTCGATGGGCAAGAACTCACTGGCCAGTGCCCTGGTCCGACTCTTGG
GTGGAAAGGAAAATGCGGAGGGCTCGCCTTATGCCGTCGAACTAGAGGAC
ATCCTCGCCTGGGTGGGGCGGCTGGGCTTGGAGCCGCTGCCGAACGGAGG
CGTCATTCCAGTGGTGGAGGAGATGGCCTCGACCATCATCAGCTATGCCC
TATCTTGCCAGGAATACCGCTCGCGCTTCCGGGAGTTCCAGACGCTGGTG
CGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGATGGCGAGCC
CGCACGCTGAATGACACCGGCCGAGCGCGCGCTGTACCCGACGCAGTGCC
AGCGACAAGTCTACCTCCAGGTGCTGGCCTGGAACGAGCGTCTGATTCTT
TCCGGGAGGTGGCTGCAGGCTCTCAAGGCGCAGGCTGCAATGCTCGTGGC
AGCCGCGGGAGGGACGAGTCTGACGACCGTCCTCTCCGCGTCTGCGTCGA
TGGGCAAGAACTCACTGGCCAGTGCCCTGGTCCGACTCTTGGGTGGAAAG
GAAAATGCGGAGGGCTCGCCTTATGCCGTCGAACTAGAGGACATCCTCGC
CTGGGTGGGGCGGCTGGGCTTGGAGCCGCTGCCGAACGGAGGCGTCATTC
CAGTGGTGGAGGAGATGGCCTCGACCATCATCAGCTATGCCCTATCTTGC
CAGGAATACCGCTCGCGCTTCCGGGAGTTCCAGACGCTGGTGCGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGATGGCGAGCCCGCACGCT
GA

Synonyms

Publications