Properties
| Property Name | Value |
|---|
| TranscriptId | 579954 |
| Track | FilteredModels2 |
| ProteinId | 579868 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1356379..1359728 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2307 ID=mRNA_2307|Name=jgi.p|Nanoce1779_2|579868|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
GGAGAAGAAGGTGGAGAACAGCAGTAGCAGCAGCAGCAGCTGCTGCAGCA
GAAGGCCGGAGTAGACCTCGCCCTCGCCCGTCGCCTCGACCCCTCCCTCC
CTCCCTCCTTCGAACGGTGACTTGGACTACCCCGGCCTCCGCGGCCGTGG
TGGAGACCGAATGACGGCGAAGGATGGAGGTGGCACGTCTAGGGAGGGGC
GGAGGGGGGGAGAGCGGGGGGGAGGGAGAGGAGGAGAGAAGGAGTGTGGG
ACCACTGAGGAAAAAGGAATTAGAGGGTTACAAGGAGGGAGGGAGGAGGG
AGGGAGAAGAGCTCTATCTACTTACTCGTCTTGTGGGGCCATCCTCCCCG
CTGCTGTTCCAGCTGGACCTGCCGCTGCTGCTTGCCGCTATTCCTGCTTC
TGCAGACGGTCCTGGGGGTTCTGTCGCGCCAGCGGTAGTACACAGGCGGG
AGGCCTGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAG
GAAGGGAGGAAGGAAGGGAGGGAGGGAGGGACGCAATGCTGGTCATTTGT
ATGTACAAGAGGGCAGATCCCTCCCTCCCTCCCTACCGCCTGGTGCAGTG
TGGTAGGCTCGGCGTTTCGATGATCGTGACGGAAGGAGCATCGAGCTCCA
TTGCGACACTTCCCCGATGCGAAAAATCTGGCGGGGGCAGGGAGGGAGGG
AGGGAGGGAGGGAAGGAGGGCGGGCTGGATAGCTTTCTCTCCTGCGCCTC
CTCCTCCTCCTCCCCCTCCTCCTCCCTCTCCTCCAGCTGCGGGTGCAGCA
GCGCCGGGATGACGGAAGCATTCAGTGAGACTTGTGATAGCTTCACACTT
AGGGCGCCTACCTCCTTGCATCCATGTATTACACGATTTGTGGTTCCGCT
TGGCATGCTCATTGTGACGGAACGAGCAGTCGGGGCCCTGCAGAGGGAGA
GGGAGAGTGAAGGGGGAGGAGGAGGTAGATTATTAGATCGGCAAAAAATT
GAGCGCCAACCAAGATGTCCGGCACAAATTCGATGACTTAGTACACATGT
CATTTAAATAGTAGTAGCAGTCAGTCAAAAAGTTGGCGTTTTCAGCTGAG
GACGACGGCGCAGGTCTCCACGGCTTAACATGGACAGGGTCTGCGCCTCC
TCCCCTACCTCCATGCCCCCTAAACCCCCCGCCTCCCCCGTTGTAGCTCA
TGAAGACTGGCCACCTGTT back to topprotein sequence of jgi.p|Nanoce1779_2|579868 >mRNA_2307-protein ID=mRNA_2307-protein|Name=jgi.p|Nanoce1779_2|579868|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MTAKDGGGTSREGRRGGERGGGRGGEKECGTTEEKGIRGLQGGREEGGRR
ALSTYSSCGAILPAAVPAGPAAAACRYSCFCRRSWGFCRASGSTQAGGLE
GGREGGREGGREEGREEGREGGRDAMLVICMYKRADPSLPPYRLVQCGRL
GVSMIVTEGASSSIATLPRCEKSGGGREGGREGGKEGGLDSFLSCASSSS
SPSSSLSSSCGCSSAGMTEAFSETCDSFTLRAPTSLHPCITRFVVPLGML
IVTERAVGALQRERESEGGGGGRLLDRQKIERQPRCPAQIR* back to topmRNA from alignment at scaffold_4:1356379..1359728+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2307 ID=mRNA_2307|Name=jgi.p|Nanoce1779_2|579868|organism=Nannochloropsis oceanica|type=mRNA|length=3350bp|location=Sequence derived from alignment at scaffold_4:1356379..1359728+ (Nannochloropsis oceanica)
GGAGAAGAAGGTGGAGAAGGAGGAGAAGGAGGTGGAGAGGTGGAGAGAAG
GGGATTTTTCTTCTTCTCTCTCCTCTATTCGTCCTCCTCTTCCCTCTCCT
CCTTCTTCTCTTCCTCTTTCCCCTCTTCCTCCTCTTCCTCCTCCTCCTCT
TTCTCTTCCTCCTCTCCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCC
TCCTCCCCCTCCTTCTCCTCCTCCCCCTCCTCTTTCTCCTCCTCCTCCTC
TTCTCTTCCTCCTCCCTCCTTTTCCTCTTCTTCTCCTAGGGGGACGATGC
GTTTCCGAGGACTGTATTGGTGTGACACCTGTGAACAGTTCGTGTCTCGG
GACGGCAATGGGGCACGTAACATCCTACGGGTGTACAGGAGTATGGTCCG
AGGGGAAGCTCGTCCCCATGATCTGCGGTTTGGTCAACCGCGGCAGGATA
TAGGGACACTCTATGTGTAGCCTTCCCGCTGACCTCCTCTTTTATCCTCC
TTCCCCCTCTCCTCCTGGCCCTGTGTGGGCCGTCCAGGGACTTTGCCAGG
TCAAAAAACCTGTCAAAGTCGCTAGAAAAACTCGGACAAGGAAATAAGGG
ATGACAACAATTTCTTGTTGGAAGGCTCCCCCTCGTATGCAAGTCCTCGA
AGACGCAGGTTGCATGCGATAGTTCTAGAGAGATGTAGGAACGCTCAAAA
GAACTACAAACCGTCCTCAAATGGGCATTGGGCATTGGGCGTGGGCTGGC
GCAGCTCCTCAATTTGTGTGTTCTTTTGAAGGGGCACTCAAAGGTTTTCC
AAAAATAGACATGATTTGATTGCTTTGGAGACGTAGGCACTCCATGTCTT
TCCCTCCCTCCCCCTCTATCCTCCCTAATCGTTCTCCAGGAGCGCCATCA
GCGCTGCCTCGTCCTCATCCAGCTCTTCCTCCTGCCCTTGGCCCTCCCTC
TCCTCCCCCGCCTCTTCACCTTCTTCATAATACTCTTCCTCATTCCCTTC
CTTCCCCCACTCTTCCCCACCAAACCCTTTTCCTCCTGCTTCTCCTACTC
CTTCCATCCCTTGCTGCCCATCTTCCTCTTCCTTCCCTCCCTTCACCCCT
CTCTCAGCCACCACCTCAGCCCTTGATGGTTCGACAGGGACAGACAACGG
AAAATTTGCCTCAGGGCCTCCTGAGGGAAGAGGGAGGGAGGGAGGGAGGG
CTGCAGGTGTAGGTGCGAGGCATTGCCGCTTATTATTTGTGGTATTAGGA
ATTAAAGGCTCTTGCGGGATCTGTGGTGAGCCTACACCTATTTCTCCTTG
TGCTGCTGCTGCTGCTCCTCCTTCTCCTCCTGCTGCTCCTCCACCTCTTC
CTGATGCTGCTCCTCCTGACACTGCTGCAGCTGTTGCTGTTCCTGCTCCT
GCTCCTGCTGCCGCTGCTGCCTCCTTCCCAATCGCGAGTGGTCTCTTCTT
GCTCGCTTCTTCTTCCTCTTCTCCATCTCCTGTTCTCCTTCCACCATGCT
CTCCTCCTTCTTCCTCTTCCTCTCCTCTTCCTCCTCCTCCTTCCCTTCCC
CCTCCTCCATCTCCTCCTCCTTGTCTTTCTGCCATCACCTCCTCGAAGCT
CTTTACGTGGAAAGTTTCAAATCTCTCTTTCCTTGTCTTGCTGAGAGAAA
TAGGAGAAGGAGGAGGAGAAGGAGGTGGAGGAGAAGGATCAGCAGCAGCG
GCAGCGGCAACAGGAGTAGGGTGAGGTAGAGGGGGAGGGTAGCAAGGAGG
GCGGCTTCGAGGGGCATCGGAGGAGGAGGAGAAGGAGGAGGACGGCGCTA
CAGCAGTAGCAGCAGCAGCAGCTGCTGCAGCAGAAGGCCGGAGTAGACCT
CGCCCTCGCCCGTCGCCTCGACCCCTCCCTCCCTCCCTCCTTCGAACGGT
GACTTGGACTACCCCGGCCTCCGCGGCCGTGGTGGAGACCGAATGACGGC
GAAGGATGGAGGTGGCACGTCTAGGGAGGGGCGGAGGGGGGGAGAGCGGG
GGGGAGGGAGAGGAGGAGAGAAGGAGTGTGGGACCACTGAGGAAAAAGGA
ATTAGAGGGTTACAAGGAGGGAGGGAGGAGGGAGGGAGAAGAGCTCTATC
TACTTACTCGTCTTGTGGGGCCATCCTCCCCGCTGCTGTTCCAGCTGGAC
CTGCCGCTGCTGCTTGCCGCTATTCCTGCTTCTGCAGACGGTCCTGGGGG
TTCTGTCGCGCCAGCGGTAGTACACAGGCGGGAGGCCTGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGG
AGGGAGGGAGGGACGCAATGCTGGTCATTTGTATGTACAAGAGGGTGCGT
GCGACGACTGCCTATCACGTGAGTCTTCTCCTCCTTCATGTATGAGCTGT
GGATGTTTGACGCCGACAGGCAGATCCCTCCCTCCCTCCCTACCGCCTGG
TGCAGTGTGGTAGGCTCGGCGTTTCGATGATCGTGACGGAAGGAGCATCG
AGCTCCATTGCGACACTTCCCCGATGCGAAAAATCTGGCGGGGGCAGGGA
GGGAGGGAGGGAGGGAGGGAAGGAGGGCGGGCTGGGTAAGACACTTTCTC
CACGTATGCCGATGTTTTAAAATCACAGTTCATCGTCTCACTCACTTCCC
CTCTTCTTTCTTTCCCCCCCCTCTCCCATCTTGACGTACTTGCAGATAGC
TTTCTCTCCTGCGCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCTCTCCTC
CAGCTGCGGGTGCAGCAGCGCCGGGATGACGGAAGTAGCATTCAACTTTG
CAATTTCCTAATGGGTAAGATTTAAGGAGGGAAGAAAGGGAAGAAGGGAG
GGAAGGAGGGTGGGTGGGAAGTGTATGAGGACGGTGTTGCCGATGGCAGG
TGGAGGAAGGGATCACCACGGCAACGCAGGCATTCAGTGAGACTTGTGAT
AGCTTCACACTTAGGGCGCCTACCTCCTTGCATCCATGTATTACACGATT
TGTGGTTCCGCTTGGCATGCTCATTGTGACGGAACGAGCAGTCGGGGCCC
TGCAGAGGGAGAGGGAGAGTGAAGGGGGAGGAGGAGGTAGATTATTAGAT
CGGCAAAAAATTGAGCGCCAACCAAGATGTCCGGCACAAATTCGATGAGC
CAACTCCCTTTGCTCACCTTAGTACACATGTCATTTAAATAGTAGTAGCA
GTCAGTCAAAAAGTTGGCGTTTTCAGCTGAGGACGACGGCGCAGGTCTCC
ACGGCTTAACATGGACAGGGTCTGCGCCTCCTCCCCTACCTCCATGCCCC
CTAAACCCCCCGCCTCCCCCGTTGTAGCTCATGAAGACTGGCCACCTGTT
back to topCoding sequence (CDS) from alignment at scaffold_4:1356379..1359728+ >mRNA_2307 ID=mRNA_2307|Name=jgi.p|Nanoce1779_2|579868|organism=Nannochloropsis oceanica|type=CDS|length=3504bp|location=Sequence derived from alignment at scaffold_4:1356379..1359728+ (Nannochloropsis oceanica)
ATGACGGCGAAGGATGGAGGTGGCACGTCTAGGGAGGGGCGGAGGGGGGG
AGAGCGGGGGGGAGGGAGAGGAGGAGAGAAGGAGTGTGGGACCACTGAGG
AAAAAGGAATTAGAGGGTTACAAGGAGGGAGGGAGGAGGGAGGGAGAAGA
GCTCTATCTACTTACTCGTCTTGTGGGGCCATCCTCCCCGCTGCTGTTCC
AGCTGGACCTGCCGCTGCTGCTTGCCGCTATTCCTGCTTCTGCAGACGGT
CCTGGGGGTTCTGTCGCGCCAGCGGTAGTACACAGGCGGGAGGCCTGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAGGA
AGGAAGGGAGGGAGGGAGGGACGCAATGCTGGTCATTTGTATGTACAAGA
GGGCAGATCCCTCCCTCCCTCCCTACCGCCTGGTGCAGTGTGGTAGGCTC
GGCGTTTCGATGATCGTGACGGAAGGAGCATCGAGCTCCATTGCGACACT
TCCCCGATGCGAAAAATCTGGCGGGGGCAGGGAGGGAGGGAGGGAGGGAG
GGAAGGAGGGCGGGCTGGATAGCTTTCTCTCCTGCGCCTCCTCCTCCTCC
TCCCCCTCCTCCTCCCTCTCCTCCAGCTGCGGGTGCAGCAGCGCCGGGAT
GACGGAAGCATTCAGTGAGACTTGTGATAGCTTCACACTTAGGGCGCCTA
CCTCCTTGCATCCATGTATTACACGATTTGTGGTTCCGCTTGGCATGCTC
ATTGTGACGGAACGAGCAGTCGGGGCCCTGCAGAGGGAGAGGGAGAGTGA
AGGGGGAGGAGGAGGTAGATTATTAGATCGGCAAAAAATTGAGCGCCAAC
CAAGATGTCCGGCACAAATTCGATGAATGACGGCGAAGGATGGAGGTGGC
ACGTCTAGGGAGGGGCGGAGGGGGGGAGAGCGGGGGGGAGGGAGAGGAGG
AGAGAAGGAGTGTGGGACCACTGAGGAAAAAGGAATTAGAGGGTTACAAG
GAGGGAGGGAGGAGGGAGGGAGAAGAGCTCTATCTACTTACTCGTCTTGT
GGGGCCATCCTCCCCGCTGCTGTTCCAGCTGGACCTGCCGCTGCTGCTTG
CCGCTATTCCTGCTTCTGCAGACGGTCCTGGGGGTTCTGTCGCGCCAGCG
GTAGTACACAGGCGGGAGGCCTGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGGAGGGAGGGAGGGACGC
AATGCTGGTCATTTGTATGTACAAGAGGGCAGATCCCTCCCTCCCTCCCT
ACCGCCTGGTGCAGTGTGGTAGGCTCGGCGTTTCGATGATCGTGACGGAA
GGAGCATCGAGCTCCATTGCGACACTTCCCCGATGCGAAAAATCTGGCGG
GGGCAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCGGGCTGGATAGCT
TTCTCTCCTGCGCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCTCTCCTCC
AGCTGCGGGTGCAGCAGCGCCGGGATGACGGAAGCATTCAGTGAGACTTG
TGATAGCTTCACACTTAGGGCGCCTACCTCCTTGCATCCATGTATTACAC
GATTTGTGGTTCCGCTTGGCATGCTCATTGTGACGGAACGAGCAGTCGGG
GCCCTGCAGAGGGAGAGGGAGAGTGAAGGGGGAGGAGGAGGTAGATTATT
AGATCGGCAAAAAATTGAGCGCCAACCAAGATGTCCGGCACAAATTCGAT
GAATGACGGCGAAGGATGGAGGTGGCACGTCTAGGGAGGGGCGGAGGGGG
GGAGAGCGGGGGGGAGGGAGAGGAGGAGAGAAGGAGTGTGGGACCACTGA
GGAAAAAGGAATTAGAGGGTTACAAGGAGGGAGGGAGGAGGGAGGGAGAA
GAGCTCTATCTACTTACTCGTCTTGTGGGGCCATCCTCCCCGCTGCTGTT
CCAGCTGGACCTGCCGCTGCTGCTTGCCGCTATTCCTGCTTCTGCAGACG
GTCCTGGGGGTTCTGTCGCGCCAGCGGTAGTACACAGGCGGGAGGCCTGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGGAG
GAAGGAAGGGAGGGAGGGAGGGACGCAATGCTGGTCATTTGTATGTACAA
GAGGGCAGATCCCTCCCTCCCTCCCTACCGCCTGGTGCAGTGTGGTAGGC
TCGGCGTTTCGATGATCGTGACGGAAGGAGCATCGAGCTCCATTGCGACA
CTTCCCCGATGCGAAAAATCTGGCGGGGGCAGGGAGGGAGGGAGGGAGGG
AGGGAAGGAGGGCGGGCTGGATAGCTTTCTCTCCTGCGCCTCCTCCTCCT
CCTCCCCCTCCTCCTCCCTCTCCTCCAGCTGCGGGTGCAGCAGCGCCGGG
ATGACGGAAGCATTCAGTGAGACTTGTGATAGCTTCACACTTAGGGCGCC
TACCTCCTTGCATCCATGTATTACACGATTTGTGGTTCCGCTTGGCATGC
TCATTGTGACGGAACGAGCAGTCGGGGCCCTGCAGAGGGAGAGGGAGAGT
GAAGGGGGAGGAGGAGGTAGATTATTAGATCGGCAAAAAATTGAGCGCCA
ACCAAGATGTCCGGCACAAATTCGATGAATGACGGCGAAGGATGGAGGTG
GCACGTCTAGGGAGGGGCGGAGGGGGGGAGAGCGGGGGGGAGGGAGAGGA
GGAGAGAAGGAGTGTGGGACCACTGAGGAAAAAGGAATTAGAGGGTTACA
AGGAGGGAGGGAGGAGGGAGGGAGAAGAGCTCTATCTACTTACTCGTCTT
GTGGGGCCATCCTCCCCGCTGCTGTTCCAGCTGGACCTGCCGCTGCTGCT
TGCCGCTATTCCTGCTTCTGCAGACGGTCCTGGGGGTTCTGTCGCGCCAG
CGGTAGTACACAGGCGGGAGGCCTGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGAAGGAAGGGAGGAAGGAAGGGAGGGAGGGAGGGAC
GCAATGCTGGTCATTTGTATGTACAAGAGGGCAGATCCCTCCCTCCCTCC
CTACCGCCTGGTGCAGTGTGGTAGGCTCGGCGTTTCGATGATCGTGACGG
AAGGAGCATCGAGCTCCATTGCGACACTTCCCCGATGCGAAAAATCTGGC
GGGGGCAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGCGGGCTGGATAG
CTTTCTCTCCTGCGCCTCCTCCTCCTCCTCCCCCTCCTCCTCCCTCTCCT
CCAGCTGCGGGTGCAGCAGCGCCGGGATGACGGAAGCATTCAGTGAGACT
TGTGATAGCTTCACACTTAGGGCGCCTACCTCCTTGCATCCATGTATTAC
ACGATTTGTGGTTCCGCTTGGCATGCTCATTGTGACGGAACGAGCAGTCG
GGGCCCTGCAGAGGGAGAGGGAGAGTGAAGGGGGAGGAGGAGGTAGATTA
TTAGATCGGCAAAAAATTGAGCGCCAACCAAGATGTCCGGCACAAATTCG
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