jgi.p|Nanoce1779_2|579882, mRNA_2306 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579882
Unique NamemRNA_2306
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length622
Alignment locationscaffold_4:1357056..1357677 +

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Properties
Property NameValue
TranscriptId579968
TrackFilteredModels2
ProteinId579882
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1357056..1357677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579882gene_2306Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579882mRNA_2306-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2306CDS_2306Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2306 ID=mRNA_2306|Name=jgi.p|Nanoce1779_2|579882|organism=Nannochloropsis oceanica|type=mRNA|length=622bp
GAGAGATGTAGGAACGCTCAAAAGAACTACAAACCGTCCTCAAATGGGCA
TTGGGCATTGGGCGTGGGCTGGCGCAGCTCCTCAATTTGTGTGTTCTTTT
GAAGGGGCACTCAAAGGTTTTCCAAAAATAGACATGATTTGATTGCTTTG
GAGACGTAGGCACTCCATGTCTTTCCCTCCCTCCCCCTCTATCCTCCCTA
ATCGTTCTCCAGGAGCGCCATCAGCGCTGCCTCGTCCTCATCCAGCTCTT
CCTCCTGCCCTTGGCCCTCCCTCTCCTCCCCCGCCTCTTCACCTTCTTCA
TAATACTCTTCCTCATTCCCTTCCTTCCCCCACTCTTCCCCACCAAACCC
TTTTCCTCCTGCTTCTCCTACTCCTTCCATCCCTTGCTGCCCATCTTCCT
CTTCCTTCCCTCCCTTCACCCCTCTCTCAGCCACCACCTCAGCCCTTGAT
GGTTCGACAGGGACAGACAACGGAAAATTTGCCTCAGGGCCTCCTGAGGG
AAGAGGGAGGGAGGGAGGGAGGGCTGCAGGTGTAGGTGCGAGGCATTGCC
GCTTATTATTTGTGGTATTAGGAATTAAAGGCTCTTGCGGGATCTGTGGT
GAGCCTACACCTATTTCTCCTT
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protein sequence of jgi.p|Nanoce1779_2|579882

>mRNA_2306-protein ID=mRNA_2306-protein|Name=jgi.p|Nanoce1779_2|579882|organism=Nannochloropsis oceanica|type=polypeptide|length=123bp
MSFPPSPSILPNRSPGAPSALPRPHPALPPALGPPSPPPPLHLLHNTLPH
SLPSPTLPHQTLFLLLLLLLPSLAAHLPLPSLPSPLSQPPPQPLMVRQGQ
TTENLPQGLLREEGGREGGLQV*
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mRNA from alignment at scaffold_4:1357056..1357677+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2306 ID=mRNA_2306|Name=jgi.p|Nanoce1779_2|579882|organism=Nannochloropsis oceanica|type=mRNA|length=622bp|location=Sequence derived from alignment at scaffold_4:1357056..1357677+ (Nannochloropsis oceanica)
GAGAGATGTAGGAACGCTCAAAAGAACTACAAACCGTCCTCAAATGGGCA
TTGGGCATTGGGCGTGGGCTGGCGCAGCTCCTCAATTTGTGTGTTCTTTT
GAAGGGGCACTCAAAGGTTTTCCAAAAATAGACATGATTTGATTGCTTTG
GAGACGTAGGCACTCCATGTCTTTCCCTCCCTCCCCCTCTATCCTCCCTA
ATCGTTCTCCAGGAGCGCCATCAGCGCTGCCTCGTCCTCATCCAGCTCTT
CCTCCTGCCCTTGGCCCTCCCTCTCCTCCCCCGCCTCTTCACCTTCTTCA
TAATACTCTTCCTCATTCCCTTCCTTCCCCCACTCTTCCCCACCAAACCC
TTTTCCTCCTGCTTCTCCTACTCCTTCCATCCCTTGCTGCCCATCTTCCT
CTTCCTTCCCTCCCTTCACCCCTCTCTCAGCCACCACCTCAGCCCTTGAT
GGTTCGACAGGGACAGACAACGGAAAATTTGCCTCAGGGCCTCCTGAGGG
AAGAGGGAGGGAGGGAGGGAGGGCTGCAGGTGTAGGTGCGAGGCATTGCC
GCTTATTATTTGTGGTATTAGGAATTAAAGGCTCTTGCGGGATCTGTGGT
GAGCCTACACCTATTTCTCCTT
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Coding sequence (CDS) from alignment at scaffold_4:1357056..1357677+

>mRNA_2306 ID=mRNA_2306|Name=jgi.p|Nanoce1779_2|579882|organism=Nannochloropsis oceanica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_4:1357056..1357677+ (Nannochloropsis oceanica)
ATGTCTTTCCCTCCCTCCCCCTCTATCCTCCCTAATCGTTCTCCAGGAGC
GCCATCAGCGCTGCCTCGTCCTCATCCAGCTCTTCCTCCTGCCCTTGGCC
CTCCCTCTCCTCCCCCGCCTCTTCACCTTCTTCATAATACTCTTCCTCAT
TCCCTTCCTTCCCCCACTCTTCCCCACCAAACCCTTTTCCTCCTGCTTCT
CCTACTCCTTCCATCCCTTGCTGCCCATCTTCCTCTTCCTTCCCTCCCTT
CACCCCTCTCTCAGCCACCACCTCAGCCCTTGATGGTTCGACAGGGACAG
ACAACGGAAAATTTGCCTCAGGGCCTCCTGAGGGAAGAGGGAGGGAGGGA
GGGAGGGCTGCAGGTGTAG
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Synonyms
Publications