jgi.p|Nanoce1779_2|628402, mRNA_2304 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628402
Unique Name	mRNA_2304
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1832
Alignment location	scaffold_4:1351821..1353652 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628488
Track	FilteredModels2
ProteinId	628402

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1351821..1353652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628402	gene_2304	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628402	mRNA_2304-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2304	CDS_2304	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1351821..1353652+
coding sequence from alignment at scaffold_4:1351821..1353652+

mRNA sequence

>mRNA_2304 ID=mRNA_2304|Name=jgi.p|Nanoce1779_2|628402|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
ATGCGTCTAAGTGCAGATATTGTGCTCATGTGCCAACTACATCCCACTTA
CAGGCACAACATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCT
CCGGTCAGAGCGACAACTTTGGCGCCGCCGGTGTCCAGGTCTCTATCTCC
GCCCCTGCCCCACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCA
TCGGGATGATGCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAG
GACCAGTTAAGAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGC
GGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGC
CTTGACGGTTGCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAAC
GCACTGAAATTGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAG
GAAGGCTTGAATCGCGTCGAGTCGACGCGTTACATTTCTTCAGTCCTGAT
CACGCTATCGAAAGATCCTCCTCCCCTCGACATTCGCAGTCTTCCGGGAT
ATCAGTCGCCTTTGCCTCTAACAGAAGTGCGATATCCTGTGGGGGGGTTC
CAGCGTCCGTACTCTCGAGGCGGACGGAATGGCGGCGGGAGGGGGAGGGG
AGGGCGGGATGGAAGAGGGAGGGGTATAGGTGGGGGAAGGAGAGGAGGCA
GAGAAGGAAGAAGAAGGGGAGAAGTAAAGGAGGGAAGGGAAGGAGATTTC
GGATATCACGCATCTCCATACCCCCCACCGCCGCATGAGCAGCAGTACCA
CCAACAGCTCCTGGAGCAGTACTTCCAGTCGCTGCAGATTTCACAGTACC
AGCAACTTCATCACCACCACCAGCAGCAACAGCAGCAACAGCAGCAATAT
CAGCACCAGCAACCGCAATCTGCAGCAGCATCACCGCCACCACCGCCAAT
GCACATGGCTGCTCCTGTTGTAGTTGCTGCGGGGGCTGCAGAAGGGAGTG
GTGGAATGGGGGCGGGACTCAGGGACATGGTGGGGGTGAGAGAGATCAGA
GGAGACGAGGTGTCGTATTATGAGCAGTTTTATCACCAGACGCAGCAACA
AATACCGCCGCCGCAACCACCGCAACCACCACCACCACAGGCAGTGCATG
AAAGGATGATAAAGCCGGGTGAGAGAGGGGGAATGAGGGATCTCAGAGGA
GGTGGAGGAGGGAGAAGAGGGAGAGGTGGGCATCGTAGTTCTAACCGACG
ATGACGAGATATAACGTCCATTGCACGTGTATATATATCGATAGATATGG
ATATTACTGACGATAGACGTCCATTGCGCTGACGGAGGAAAGGAATGGGA
GATGCTGACATCAAGAAAGAAAGAAGAGACGACTGTCAATATGGAGGAGG
AAGCGACCACAGCTGTCTATGTTGCAATTTAATGGAAGGCCCGACATATC
AGTGATGGTCTCACAATCCCTTTATCCGGTACTGTTACATTCCTCTTTTT
CATCTCTCCCTCCCTCCCTTCCTCTTGCCTTCTTTTAACCCTTGCTTCCT
TACTTTTCCCACCCTCGTCCTCTTTCGACAGCAAGAGCAAAGCAGCGGAA
ATGCCCTACAAATACACACAACCCGGTGACACCCTCCCTCCCTAGGGCTA
CAAGCCCCGGGCCCTTCCGATCATGTCTGCGAGGAAGATGGTGGCGGCCA
CTGGGATCGTCACGGCCACCACGTTCTTGCCTGGACAAGGGGGGAGGGAG
GGAGGGAGCGGGAAAGAAGAGTGAGTGGATAAGAATCATTTGAAATCTAG
TCACTTGGTTTTGGCCTTGGCTTCCCCCACCC

protein sequence of jgi.p|Nanoce1779_2|628402

>mRNA_2304-protein ID=mRNA_2304-protein|Name=jgi.p|Nanoce1779_2|628402|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MRLSADIVLMCQLHPTYRHNMELPCDKQQFSVPSGQSDNFGAAGVQVSIS
APAPQRYRSKYRLLACHRDDAPAKTNEVRVTYQGPVKSYLGYAMALFEER
GARAVALKGMGRAIHKALTVAEILKRSLPGLHQRTEIGSLPFKEVWAPLE
EGLNRVESTRYISSVLITLSKDPPPLDIRSLPGYQSPLPLTEVRYPVGGF
QRPYSRGGRNGGGRGRGGRDGRGRGIGGGRRGGREGRRRGEVKEGREGDF
GYHASPYPPPPHEQQYHQQLLEQYFQSLQISQYQQLHHHHQQQQQQQQQY
QHQQPQSAAASPPPPPMHMAAPVVVAAGAAEGSGGMGAGLRDMVGVREIR
GDEVSYYEQFYHQTQQQIPPPQPPQPPPPQAVHERMIKPGERGGMRDLRG
GGGGRRGRGGHRSSNRR*

mRNA from alignment at scaffold_4:1351821..1353652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2304 ID=mRNA_2304|Name=jgi.p|Nanoce1779_2|628402|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp|location=Sequence derived from alignment at scaffold_4:1351821..1353652+ (Nannochloropsis oceanica)
ATGCGTCTAAGTGCAGATATTGTGCTCATGTGCCAACTACATCCCACTTA
CAGGCACAACATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCT
CCGGTCAGAGCGACAACTTTGGCGCCGCCGGTGTCCAGGTCTCTATCTCC
GCCCCTGCCCCACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCA
TCGGGATGATGCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAG
GACCAGTTAAGAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGC
GGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGC
CTTGACGGTTGCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAAC
GCACTGAAATTGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAG
GAAGGCTTGAATCGCGTCGAGTCGACGCGTTACATTTCTTCAGTCCTGAT
CACGCTATCGAAAGATCCTCCTCCCCTCGACATTCGCAGTCTTCCGGGAT
ATCAGTCGCCTTTGCCTCTAACAGAAGTGCGATATCCTGTGGGGGGGTTC
CAGCGTCCGTACTCTCGAGGCGGACGGAATGGCGGCGGGAGGGGGAGGGG
AGGGCGGGATGGAAGAGGGAGGGGTATAGGTGGGGGAAGGAGAGGAGGCA
GAGAAGGAAGAAGAAGGGGAGAAGTAAAGGAGGGAAGGGAAGGAGATTTC
GGATATCACGCATCTCCATACCCCCCACCGCCGCATGAGCAGCAGTACCA
CCAACAGCTCCTGGAGCAGTACTTCCAGTCGCTGCAGATTTCACAGTACC
AGCAACTTCATCACCACCACCAGCAGCAACAGCAGCAACAGCAGCAATAT
CAGCACCAGCAACCGCAATCTGCAGCAGCATCACCGCCACCACCGCCAAT
GCACATGGCTGCTCCTGTTGTAGTTGCTGCGGGGGCTGCAGAAGGGAGTG
GTGGAATGGGGGCGGGACTCAGGGACATGGTGGGGGTGAGAGAGATCAGA
GGAGACGAGGTGTCGTATTATGAGCAGTTTTATCACCAGACGCAGCAACA
AATACCGCCGCCGCAACCACCGCAACCACCACCACCACAGGCAGTGCATG
AAAGGATGATAAAGCCGGGTGAGAGAGGGGGAATGAGGGATCTCAGAGGA
GGTGGAGGAGGGAGAAGAGGGAGAGGTGGGCATCGTAGTTCTAACCGACG
ATGACGAGATATAACGTCCATTGCACGTGTATATATATCGATAGATATGG
ATATTACTGACGATAGACGTCCATTGCGCTGACGGAGGAAAGGAATGGGA
GATGCTGACATCAAGAAAGAAAGAAGAGACGACTGTCAATATGGAGGAGG
AAGCGACCACAGCTGTCTATGTTGCAATTTAATGGAAGGCCCGACATATC
AGTGATGGTCTCACAATCCCTTTATCCGGTACTGTTACATTCCTCTTTTT
CATCTCTCCCTCCCTCCCTTCCTCTTGCCTTCTTTTAACCCTTGCTTCCT
TACTTTTCCCACCCTCGTCCTCTTTCGACAGCAAGAGCAAAGCAGCGGAA
ATGCCCTACAAATACACACAACCCGGTGACACCCTCCCTCCCTAGGGCTA
CAAGCCCCGGGCCCTTCCGATCATGTCTGCGAGGAAGATGGTGGCGGCCA
CTGGGATCGTCACGGCCACCACGTTCTTGCCTGGACAAGGGGGGAGGGAG
GGAGGGAGCGGGAAAGAAGAGTGAGTGGATAAGAATCATTTGAAATCTAG
TCACTTGGTTTTGGCCTTGGCTTCCCCCACCC

Coding sequence (CDS) from alignment at scaffold_4:1351821..1353652+

>mRNA_2304 ID=mRNA_2304|Name=jgi.p|Nanoce1779_2|628402|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_4:1351821..1353652+ (Nannochloropsis oceanica)
ATGCGTCTAAGTGCAGATATTGTGCTCATGTGCCAACTACATCCCACTTA
CAGGCACAACATGGAGTTGCCGTGTGACAAACAACAGTTTTCTGTACCCT
CCGGTCAGAGCGACAACTTTGGCGCCGCCGGTGTCCAGGTCTCTATCTCC
GCCCCTGCCCCACAACGCTACCGTAGCAAATACCGCCTCTTGGCCTGTCA
TCGGGATGATGCACCTGCCAAGACCAACGAAGTACGCGTCACCTACCAAG
GACCAGTTAAGAGTTACCTGGGCTATGCCATGGCCCTGTTCGAGGAGCGC
GGTGCCCGGGCCGTGGCGCTGAAAGGCATGGGGAGGGCCATCCACAAGGC
CTTGACGGTTGCCGAAATTTTGAAACGCAGCTTGCCTGGACTCCATCAAC
GCACTGAAATTGGATCCCTGCCGTTCAAAGAGGTGTGGGCACCGTTGGAG
GAAGGCTTGAATCGCGTCGAGTCGACGCGTTACATTTCTTCAGTCCTGAT
CACGCTATCGAAAGATCCTCCTCCCCTCGACATTCGCAGTCTTCCGGGAT
ATCAGTCGCCTTTGCCTCTAACAGAAGTGCGATATCCTGTGGGGGGGTTC
CAGCGTCCGTACTCTCGAGGCGGACGGAATGGCGGCGGGAGGGGGAGGGG
AGGGCGGGATGGAAGAGGGAGGGGTATAGGTGGGGGAAGGAGAGGAGGCA
GAGAAGGAAGAAGAAGGGGAGAAGTAAAGGAGGGAAGGGAAGGAGATTTC
GGATATCACGCATCTCCATACCCCCCACCGCCGCATGAGCAGCAGTACCA
CCAACAGCTCCTGGAGCAGTACTTCCAGTCGCTGCAGATTTCACAGTACC
AGCAACTTCATCACCACCACCAGCAGCAACAGCAGCAACAGCAGCAATAT
CAGCACCAGCAACCGCAATCTGCAGCAGCATCACCGCCACCACCGCCAAT
GCACATGGCTGCTCCTGTTGTAGTTGCTGCGGGGGCTGCAGAAGGGAGTG
GTGGAATGGGGGCGGGACTCAGGGACATGGTGGGGGTGAGAGAGATCAGA
GGAGACGAGGTGTCGTATTATGAGCAGTTTTATCACCAGACGCAGCAACA
AATACCGCCGCCGCAACCACCGCAACCACCACCACCACAGGCAGTGCATG
AAAGGATGATAAAGCCGGGTGAGAGAGGGGGAATGAGGGATCTCAGAGGA
GGTGGAGGAGGGAGAAGAGGGAGAGGTGGGCATCGTAGTTCTAACCGACG
ATGA

Synonyms

Publications