jgi.p|Nanoce1779_2|579861, mRNA_2303 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579861
Unique Name	mRNA_2303
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	630
Alignment location	scaffold_4:1350246..1354196 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579947
Track	FilteredModels2
ProteinId	579861

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1350246..1354196 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579861	gene_2303	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579861	mRNA_2303-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2303	CDS_2303	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1350246..1354196+
coding sequence from alignment at scaffold_4:1350246..1354196+

mRNA sequence

>mRNA_2303 ID=mRNA_2303|Name=jgi.p|Nanoce1779_2|579861|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
GAGACCGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGG
TGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATA
TCTGGGCTGACGACTTTCCCATACCAAAGACGATGAAATGGGGCTTTGCC
TCCCTTTTGATTTTCGTCATCTCCACCATTATTGGAGGGATCGCGGCCAA
GCTCATCTACGACGAGCTCCTGGCTAACATCGACTACATTCACGGCGTGG
CTGAGTCCTTGCTAGGCGTCACCAACATAGTTCTGGCCATCGCCGCGTTT
CGAGCCTTGGAAGCCGCCAAGAAAGACAGGGGTGGGGAGCGGCCGGAAAG
ATGGACGGAGGACGGCGGAGTGGATGTGTGAAAAAAAGAAAGGGAGAGAA
GACCGAAGGGGTGTCGTTTCCTTCCACTAATTAAAAATCGAGATATTTTA
GATTGCTCTCGAGGAGAGAACGTCAAAGTCCAGCTTTTTGTTTCTGTCTA
CGCGTTGATTTTAATTCTTGTTCGTTTGGTTACGTGTGGGCGTGAAGTGC
TTGTCCTTGACCACCACGGCCGTCATATATTTCGGAACTGTCTTCATAAT
CCCTGCCGAGGTCCCGAGCCAGAGGCCCTG

protein sequence of jgi.p|Nanoce1779_2|579861

>mRNA_2303-protein ID=mRNA_2303-protein|Name=jgi.p|Nanoce1779_2|579861|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIV
LAIAAFRALEAAKKDRGGERPERWTEDGGVDV*

mRNA from alignment at scaffold_4:1350246..1354196+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2303 ID=mRNA_2303|Name=jgi.p|Nanoce1779_2|579861|organism=Nannochloropsis oceanica|type=mRNA|length=3951bp|location=Sequence derived from alignment at scaffold_4:1350246..1354196+ (Nannochloropsis oceanica)
GAGACCGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGG
TGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATA
TCTGGGCTGACGACTTTCCCATACCAAAGGTAGGGAGGGAGGGAGGCAGG
GAAAAAGGGAGGGAGGGAGGGGGACAGGTGAAGAGATTGCGCCTTGGGTT
CTTCTTTTCTTTTGAATTGTTCACGTTTCTTGTCCGAGCAGGCCTTGTTC
TCTCTAGATCACACGCTCCCTCCACCCCTTGCCCTCCCTCCCTCCCCCCC
TCCCTCCCTCCCTCCACGCCTTCAGACGATGAAATGGGGCTTTGCCTCCC
TTTTGATTTTCGTCATCTCCACCATTATTGGAGGGATCGCGGCCAAGCTC
ATCTACGACGAGCTCCTGGCTAACATCGACTACATTCACGGCGTGGCTGA
GTCCTTGCTAGGTACGCCCTTCCTCACTCCCTCCCTTCTTCCCTCCCTCC
CTCCCTCCCTCCCACACTCCCTCACTCCTTTATCAATCTTTGCATCATCC
CCTTCCCTCCTTGGCATTTAGCGGCTGTGATTTCATGCCATTAGTGCTAT
GGTTTCTGTGTCAACCTCTCCGGCTTATCCTAAACAGAACCCTCCAGAAA
GCGACCCGCCGTCTGAATCCCTTCGTCCTCCTCGCCTGACCTCACTTCCC
TCTTCTCTAACTCTCGTCCCATCCTTTCTCCCTCCATCCCTCTCTACTCA
CCGGCAGGCGTCACCAACATAGTTCTGGCCATCGCCGCGTTTCGAGCCTT
GGAAGCCGCCAAGAAAGACAGGGGTGGGGAGCGGCCGGAAAGATGGACGG
AGGACGGCGGAGTGGATGTGTGAAAAAAAGAAAGGGAGAGAAGACCGAAG
GGGTGTCGTTTCCTTCCACTAATTAAAAATCGAGATATTTTAGATTGCTC
TCGAGGAGAGAACGTCAAAGTCCAGCTTTTTGTTTCTGTCTACGCGTTGA
TTTTAATTCTTGTTCGTTTGGTTACGTGTGGGCGTGAAGTGCTTTCAATG
ATATCACCAGTTCCAGACAACCCTATGTTTCGAAACGCACATTAATTATT
CTACGTGATAACAATAGGGATGGCCTTCTCTTTCTCAAATAAAGGCAGAC
ACAGATTTCTAGTCGAGCAGAGAGGAGAGAAGAAGGAATGATGTATCTTC
CCAACACATTTATATTCATGAACATTTTTCATGAGAAAGGGAATTTATGA
TTGAAGGGATGCTATTCTAACATAGATTCATTAGGCCTTTTACGTGCCAT
CTTTACACCTTGAATGTGACTTGTCTTCCAATTCGATTATTTCGCCCCTC
CCGAAGGGCCAAATTGAAAGATATATCAAAAATCTGTACAAATGACTGAG
TCATTACTCGAAACATCACAAAGCTGCTTTAAAAAATTGTAGGATAGCTG
GAGGGAGGTTGGCGGTTACAGGCCCGTCGGAGCTTTCGAGCTCACTCCCC
TTACACACGATGCATTGGAAATGTTTCTGAAAGAAACAGGCAGAAGGCAG
AGAGAGGTGTCAGTGTGGCACCGGCATGCGTCTAAGTGCAGATATTGTGC
TCATGTGCCAACTACATCCCACTTACAGGCACAACATGGAGTTGCCGTGT
GACAAACAACAGTTTTCTGTACCCTCCGGTCAGAGCGACAACTTTGGCGC
CGCCGGTGTCCAGGTCTCTATCTCCGCCCCTGCCCCACAACGCTACCGTA
GCAAATACCGCCTCTTGGCCTGTCATCGGGATGATGCACCTGCCAAGACC
AACGAAGTACGCGTCACCTACCAAGGACCAGTTAAGAGTTACCTGGGCTA
TGCCATGGCCCTGTTCGAGGAGCGCGGTGCCCGGGCCGTGGCGCTGAAAG
GCATGGGGAGGGCCATCCACAAGGCCTTGACGGTTGCCGAAATTTTGAAA
CGCAGCTTGCCTGGACTCCATCAACGCACTGAAATTGGATCCCTGCCGTT
CAAAGAGGTGTGGGCACCGTTGGAGGAAGGCTTGAATCGCGTCGAGTCGA
CGCGTTACATTTCTTCAGTCCTGATCACGCTATCGAAAGATCCTCCTCCC
CTCGACATTCGCAGTCTTCCGGGATATCAGTCGCCTTTGCCTCTAACAGA
AGTGCGATATCCTGTGGGGGGGTTCCAGCGTCCGTACTCTCGAGGCGGAC
GGAATGGCGGCGGGAGGGGGAGGGGAGGGCGGGATGGAAGAGGGAGGGGT
ATAGGTGGGGGAAGGAGAGGAGGCAGAGAAGGAAGAAGAAGGGGAGAAGT
AAAGGAGGGAAGGGAAGGAGATTTCGGATATCACGCATCTCCATACCCCC
CACCGCCGCATGAGCAGCAGTACCACCAACAGCTCCTGGAGCAGTACTTC
CAGTCGCTGCAGATTTCACAGTACCAGCAACTTCATCACCACCACCAGCA
GCAACAGCAGCAACAGCAGCAATATCAGCACCAGCAACCGCAATCTGCAG
CAGCATCACCGCCACCACCGCCAATGCACATGGCTGCTCCTGTTGTAGTT
GCTGCGGGGGCTGCAGAAGGGAGTGGTGGAATGGGGGCGGGACTCAGGGA
CATGGTGGGGGTGAGAGAGATCAGAGGAGACGAGGTGTCGTATTATGAGC
AGTTTTATCACCAGACGCAGCAACAAATACCGCCGCCGCAACCACCGCAA
CCACCACCACCACAGGCAGTGCATGAAAGGATGATAAAGCCGGGTGAGAG
AGGGGGAATGAGGGATCTCAGAGGAGGTGGAGGAGGGAGAAGAGGGAGAG
GTGGGCATCGTAGTTCTAACCGACGATGACGAGATATAACGTCCATTGCA
CGTGTATATATATCGATAGATATGGATATTACTGACGATAGACGTCCATT
GCGCTGACGGAGGAAAGGAATGGGAGATGCTGACATCAAGAAAGAAAGAA
GAGACGACTGTCAATATGGAGGAGGAAGCGACCACAGCTGTCTATGTTGC
AATTTAATGGAAGGCCCGACATATCAGTGATGGTCTCACAATCCCTTTAT
CCGGTACTGTTACATTCCTCTTTTTCATCTCTCCCTCCCTCCCTTCCTCT
TGCCTTCTTTTAACCCTTGCTTCCTTACTTTTCCCACCCTCGTCCTCTTT
CGACAGCAAGAGCAAAGCAGCGGAAATGCCCTACAAATACACACAACCCG
GTGACACCCTCCCTCCCTAGGGCTACAAGCCCCGGGCCCTTCCGATCATG
TCTGCGAGGAAGATGGTGGCGGCCACTGGGATCGTCACGGCCACCACGTT
CTTGCCTGGACAAGGGGGGAGGGAGGGAGGGAGCGGGAAAGAAGAGTGAG
TGGATAAGAATCATTTGAAATCTAGTCACTTGGTTTTGGCCTTGGCTTCC
CCCACCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCACCCATCCCCCT
CCACAAGAAGCGTGCCCCTTCCTCCTCCACCAGCCCCCGCAAGGTCGGCC
CAAGGCTCTGCTCCCGCTTAAAGCACTCGTTCCTCACCACGTCCAACGGG
TTAGTCAGCACGGCGCCCGCCAAGCCGGCAGTAACGGCTTTCAAGGCCGC
ACGCTGGACGAGGAGAGAGCGAGGATTGTCCGCGTCAGCCGGAACCTCCT
CCAACCAGTCCTCCATCTGCCAGGAGAGAGGGAAAGGGGGAGGGAGCGAC
CGAGGGAAGCAAGGAGGGAGGGTGTGTTGGTCGATTCAAATCTACACAAG
CCATGCCCGCACATTTCAAGTGGTGCTGTGATCCTTCTCCTCCCCATGGC
TGGCTTTTCCCTCCCCCTCTCCCTCCTTCCCTTCCTCCCCCTTTTCCTCC
CTCCCTCCCTCCATCCCTACCTTGTCCTTGACCACCACGGCCGTCATATA
TTTCGGAACTGTCTTCATAATCCCTGCCGAGGTCCCGAGCCAGAGGCCCT
G

Coding sequence (CDS) from alignment at scaffold_4:1350246..1354196+

>mRNA_2303 ID=mRNA_2303|Name=jgi.p|Nanoce1779_2|579861|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_4:1350246..1354196+ (Nannochloropsis oceanica)
ATGAAATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATTAT
TGGAGGGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCTAACATCG
ACTACATTCACGGCGTGGCTGAGTCCTTGCTAGGCGTCACCAACATAGTT
CTGGCCATCGCCGCGTTTCGAGCCTTGGAAGCCGCCAAGAAAGACAGGGG
TGGGGAGCGGCCGGAAAGATGGACGGAGGACGGCGGAGTGGATGTGTGAA
TGAAATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATTATT
GGAGGGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCTAACATCGA
CTACATTCACGGCGTGGCTGAGTCCTTGCTAGGCGTCACCAACATAGTTC
TGGCCATCGCCGCGTTTCGAGCCTTGGAAGCCGCCAAGAAAGACAGGGGT
GGGGAGCGGCCGGAAAGATGGACGGAGGACGGCGGAGTGGATGTGTGA

Synonyms

Publications