jgi.p|Nanoce1779_2|300091, mRNA_2302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|300091
Unique NamemRNA_2302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length676
Alignment locationscaffold_4:1349492..1350852 +

Link to JBrowse

Properties
Property NameValue
TranscriptId300177
TrackFilteredModels2
ProteinId300091
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1349492..1350852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|300091gene_2302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|300091mRNA_2302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2302CDS_2302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2302 ID=mRNA_2302|Name=jgi.p|Nanoce1779_2|300091|organism=Nannochloropsis oceanica|type=mRNA|length=676bp
TCGTTGTAACTGTCTTAAATGTGTTAACATTCACCACAATCCCACCCCAC
CACCACCACACCATTGCAGACACTACTTCTAGCTACGGGTTTCCGCGCCA
CGCCTCCATAAAAAAGTGTGCCCGACCTCCCGACCCTGCTTCAGTTCAAT
CCGTAAATCCAACACAGCAAGTACAATGCACAGGAGAAGAAGACAACAAC
CACGACACCGGCCCCTTATCCTCGCACTTGCTTCCTTTTCCTTCCTCATG
GCAGCGATTATCATCAGTGCGCCAGTCAGAGCCTTCGTGCCATGCGTCTA
CCTTCTAGTCAGATGGTGTCCCGCCTCCCTTCCTCCTCTCCATCATCTCG
CTCAAAATGGCGATTGGCTGGAGACCGCAGGGACATACACGCTGAATTGG
TTGAAGGAGGTGAATTACGGTGCAGTCTTTGCCTCGTCCTTGTTTCCTTA
CTTGTGGTTTCTGAAGAATATCTGGGCTGACGACTTTCCCATACCAAAGG
GAGGGAGGGAGGGGGACAGGTGAAGAGATTGCGCCTTGGGTTCTTCTTTT
CTTTTGAATTGTTCACGTTTCTTGTCCGAGCAGGCCTTGTTCTCTCTAGA
TCACACGCTCCCTCCACCCCTTTCCCTCCTTGGCATTTAGCGGCTGTGAT
TTCATGCCATTAGTGCTATGGTTTCT
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protein sequence of jgi.p|Nanoce1779_2|300091

>mRNA_2302-protein ID=mRNA_2302-protein|Name=jgi.p|Nanoce1779_2|300091|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MHRRRRQQPRHRPLILALASFSFLMAAIIISAPVRAFVPCVYLLVRWCPA
SLPPLHHLAQNGDWLETAGTYTLNWLKEVNYGAVFASSLFPYLWFLKNIW
ADDFPIPKGGREGDR*
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mRNA from alignment at scaffold_4:1349492..1350852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2302 ID=mRNA_2302|Name=jgi.p|Nanoce1779_2|300091|organism=Nannochloropsis oceanica|type=mRNA|length=1361bp|location=Sequence derived from alignment at scaffold_4:1349492..1350852+ (Nannochloropsis oceanica)
TCGTTGTAACTGTCTTAAATGTGTTAACATTCACCACAATCCCACCCCAC
CACCACCACACCATTGCAGACACTACTTCTAGCTACGGGTTTCCGCGCCA
CGCCTCCATAAAAAAGTGTGCCCGACCTCCCGACCCTGCTTCAGTTCAAT
CCGTAAATCCAACACAGCAAGTACAATGCACAGGAGAAGAAGACAACAAC
CACGACACCGGCCCCTTATCCTCGCACTTGCTTCCTTTTCCTTCCTCATG
GCAGCGATTATCATCAGTGCGCCAGTCAGAGCCTTCGTGCCATGCGTCTA
CCTTCTAGTCAGATGGTGTCCCGCCTCCCTTCCTCCTCTCCATCATCTCG
CTCAAAGTGAGTTTTCCGGGCGCTGCGATGCTATCCTCCTTTATCCCCGT
CCGTCCCGTCTCCCTTCTCCCCGTGCCCTGCTCACACACTACGCACGACC
TAACCCACATCAAGGAATGACAACAATTTCTTGTTGGAAGGCTCCCCCTC
GTATGCAAGTCCTCGAAGACGTCAGGTTGCATGCGATAGTTCTAGAGAGA
TGTAGGAACGCTCAAAAGAACTAACCCACATCTACACATATAGACGATCA
TCCTTATCGCCCGCTTTCCCATTCTCTCGGACTTCTCCCCTCGAGGCCAC
TCTCCCCGATTTCGACTTGATTCAGAGCACCACCACCGGGGTCCTCTCCC
TCCTCTCCTCCCCCCCCTTCCGTCCTCCTCGCTGGCCAAGATGGCGATTG
GCTGGAGACCGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATT
ACGGTGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAG
AATATCTGGGCTGACGACTTTCCCATACCAAAGGTAGGGAGGGAGGGAGG
CAGGGAAAAAGGGAGGGAGGGAGGGGGACAGGTGAAGAGATTGCGCCTTG
GGTTCTTCTTTTCTTTTGAATTGTTCACGTTTCTTGTCCGAGCAGGCCTT
GTTCTCTCTAGATCACACGCTCCCTCCACCCCTTGCCCTCCCTCCCTCCC
CCCCTCCCTCCCTCCCTCCACGCCTTCAGACGATGAAATGGGGCTTTGCC
TCCCTTTTGATTTTCGTCATCTCCACCATTATTGGAGGGATCGCGGCCAA
GCTCATCTACGACGAGCTCCTGGCTAACATCGACTACATTCACGGCGTGG
CTGAGTCCTTGCTAGGTACGCCCTTCCTCACTCCCTCCCTTCTTCCCTCC
CTCCCTCCCTCCCTCCCACACTCCCTCACTCCTTTATCAATCTTTGCATC
ATCCCCTTCCCTCCTTGGCATTTAGCGGCTGTGATTTCATGCCATTAGTG
CTATGGTTTCT
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Coding sequence (CDS) from alignment at scaffold_4:1349492..1350852+

>mRNA_2302 ID=mRNA_2302|Name=jgi.p|Nanoce1779_2|300091|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_4:1349492..1350852+ (Nannochloropsis oceanica)
ATGCACAGGAGAAGAAGACAACAACCACGACACCGGCCCCTTATCCTCGC
ACTTGCTTCCTTTTCCTTCCTCATGGCAGCGATTATCATCAGTGCGCCAG
TCAGAGCCTTCGTGCCATGCGTCTACCTTCTAGTCAGATGGTGTCCCGCC
TCCCTTCCTCCTCTCCATCATCTCGCTCAAAATGGCGATTGGCTGGAGAC
CGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGGTGCAG
TCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATATCTGG
GCTGACGACTTTCCCATACCAAAGGGAGGGAGGGAGGGGGACAGGTGAAT
GCACAGGAGAAGAAGACAACAACCACGACACCGGCCCCTTATCCTCGCAC
TTGCTTCCTTTTCCTTCCTCATGGCAGCGATTATCATCAGTGCGCCAGTC
AGAGCCTTCGTGCCATGCGTCTACCTTCTAGTCAGATGGTGTCCCGCCTC
CCTTCCTCCTCTCCATCATCTCGCTCAAAATGGCGATTGGCTGGAGACCG
CAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGGTGCAGTC
TTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATATCTGGGC
TGACGACTTTCCCATACCAAAGGGAGGGAGGGAGGGGGACAGGTGAATGC
ACAGGAGAAGAAGACAACAACCACGACACCGGCCCCTTATCCTCGCACTT
GCTTCCTTTTCCTTCCTCATGGCAGCGATTATCATCAGTGCGCCAGTCAG
AGCCTTCGTGCCATGCGTCTACCTTCTAGTCAGATGGTGTCCCGCCTCCC
TTCCTCCTCTCCATCATCTCGCTCAAAATGGCGATTGGCTGGAGACCGCA
GGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGGTGCAGTCTT
TGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATATCTGGGCTG
ACGACTTTCCCATACCAAAGGGAGGGAGGGAGGGGGACAGGTGA
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Synonyms
Publications