jgi.p|Nanoce1779_2|579853, mRNA_2300 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|579853
Unique Name	mRNA_2300
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	788
Alignment location	scaffold_4:1344765..1346540 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579939
Track	FilteredModels2
ProteinId	579853

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1344765..1346540 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579853	gene_2300	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579853	mRNA_2300-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2300	CDS_2300	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1344765..1346540+
coding sequence from alignment at scaffold_4:1344765..1346540+

mRNA sequence

>mRNA_2300 ID=mRNA_2300|Name=jgi.p|Nanoce1779_2|579853|organism=Nannochloropsis oceanica|type=mRNA|length=788bp
AGCCGGGGCAATCATGCGTGTCCTTGTGCCGCTCATTTCGCTCTTCTCCT
TGTCGAGCGCCTTCCTACTCCCCACCCTTCCTTCCTCCACCTCGCCCCTC
TCTTCCACCCGCGGCCGTGCTCTGGCCTCTTCCGCCTCTGAAGAGCTGTC
ACGCAAGGAGAAGAGCAAGGAGGCAAGTGCGATCTCTTTGAAAGGCCTAG
GCGAGCTGGATGATGGCGAGAACTCCGGAGCACGGGCAGCAAACGCAAGC
GATAAGGACAGCATGAAACTCGAGCCGGAGGTCGTCTTCTTTGAGGGACC
CCCGCATTGGAGTGAGGTGGTTGTGCCGGCCATCTCCATCCTGACCGTAA
TTGGCATCATTCCCTTCGCCTCCTCTGTCGCCCGACAGATCTGGGTGAAG
TATAAGATCACCTCTCGCCGCGGCGTGGGTGGGAAGGACTTGACGGAGGT
CATCTACGCCGACATCGAACGCGTCAACTACGTCTTCCGCTCTTTCGGCA
CTACTGGCGATATGGTCCTCTTTCTAAGGGATGGCGCCAAGGTCGAGATG
CGCTCCATTCCCAATTTCCGCGAGGTCTACACTTACATCCGGGATATGCT
GGACGAGGACGCCAAGGCGAAAACCGCCGTCCTTCCCGAGCTAAAATAAC
ACCACCATCCACGTGTGTAAGGAAACAAATAACAGATGAACTTGGGGGGG
GCAGGGGGAGGGAGGGAGGGAAGAAGGAGGGAGGCTGCGTGCGTGCGTGT
GAAGCTTCTGGGGAAGGAGAGACGGAGGTATTACAGTA

protein sequence of jgi.p|Nanoce1779_2|579853

>mRNA_2300-protein ID=mRNA_2300-protein|Name=jgi.p|Nanoce1779_2|579853|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MRVLVPLISLFSLSSAFLLPTLPSSTSPLSSTRGRALASSASEELSRKEK
SKEASAISLKGLGELDDGENSGARAANASDKDSMKLEPEVVFFEGPPHWS
EVVVPAISILTVIGIIPFASSVARQIWVKYKITSRRGVGGKDLTEVIYAD
IERVNYVFRSFGTTGDMVLFLRDGAKVEMRSIPNFREVYTYIRDMLDEDA
KAKTAVLPELK*

mRNA from alignment at scaffold_4:1344765..1346540+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2300 ID=mRNA_2300|Name=jgi.p|Nanoce1779_2|579853|organism=Nannochloropsis oceanica|type=mRNA|length=1776bp|location=Sequence derived from alignment at scaffold_4:1344765..1346540+ (Nannochloropsis oceanica)
AGCCGGGGCAATCATGCGTGTCCTTGTGCCGCTCATTTCGCTCTTCTCCT
TGTCGAGCGCCTTCCTACTCCCCACCCTTCCTTCCTCCACCTCGCCCCTC
TCTTCCACCCGCGGCCGTGCTCTGGCCTCTTCCGCCTCTGAAGAGCTGTC
ACGCAAGGAGAAGAGCAAGGAGGCAAGTGCGATCTCTTTGAAAGGCCTAG
GCGAGCTGGATGATGGCGAGAACTCCGGAGCACGGGCAGCAAACGCAAGG
TACGGTGTGTCGTCCCTCGCCTTTTTTTTGGGGGCCTTTCGGCATCATGA
TCTACTTTGTTTTTCTTCTCACCCGCCTGCCAGTGCTCCATGCTGTATAT
TCATCTATGAGCAACACGATCTCGATCAATATTTTCCCCTTGGCCAATCT
GTCTCCCCTACCATTCCCTCCTTCCTCCCCACCCTACGTGAAGGAGAAAC
GCGAGGGCTTGGAGGCCGCCCGCCGTGCACTAAGCGATAAGGACAGCATG
AAACTCGAGCCGGAGGTCGTCTTCTTTGAGGGACCCCCGCATTGGAGTGA
GGTAGGTTGAAGAAATCAGGAGGGAGGGAAAGTGGGAAGGAGGGTGGCTG
AAAATTTTGGGGTATGGGCGGACACGAGAGTGCAAACGGATGTGGCTTTT
GATGTACAAAAAGAAATGGCTTTTGTTACCGCACTAGCACATATTTTATC
ACCACGTTTGCTAACTCCCTCCTTTTCTTCTTTCCTCCCTCCCTCCTTCC
TCCTCGCTCCCTGCTCCTCGGTCCTCCCCAGGTGGTTGTGCCGGCCATCT
CCATCCTGACCGTAATTGGCATCATTCCCTTCGCCTCCTCTGTCGCCCGA
CAGATCTGGGTATGGAGGGAGAGAAGAAGGGAGGGAAGGAGGGAGATAGA
GGGCGATGAGTTTATCGGAGGCAGCGAGAAGAAATGGAGGAGGAAGGAAG
GAGGGAGGGAGGAAGGAGGGAGGGGGGTCTGTTAAGTGTTAGAAACGGTG
CAATAGAACCAGCTGCTGATGCCAAACGATTCATGCCTGACATTCCATAC
CTTCCTTCCCTCCCTCCCTCGTTTCCTTGCCCCTCACCCTTTCTCTCGAC
CCCAGGTGAAGTATAAGATCACCTCTCGCCGGTATCGGTGACCAGCGGCG
TGGGTGGGAAGGACTTGACGGAGGTGGGGAGGGAGGGCGGGAGAGGAGGA
GAAGAGGAGGGAGGGAGGGGGACGGGGCTCTCCAATTGTGCTCTTCACCG
CTTCTTCTTCTCCGTCTCTCACTTAAATAAATAAACAACCATCAAACCCA
CCCCTCCTCCCCTCCCTCGTGTCCAGGTCATCTACGCCGACATCGAACGC
GTCAACTACGTCTTCCGCTCTTTCGGCACTACTGGCGATATGGTCCTCTT
TCTAAGGGATGGCGCCAAGGTCGAGATGCGGTACGTGCCCTCCCTCCCTC
CCTCCTCCCTCCCTCCTTGTCCCTCGTGCACGCGTGAGAGGCAGCATCTC
ACGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGCTCCATTCCC
AATTTCCGCGAGGTCTACACTTACATCCGGGATATGCTGGACGAGGACGC
CAAGGCGAAAACCGCCGTCCTTCCCGAGCTAAAATAACACCACCATCCAC
GTGTGTAAGGAAACAAATAACAGATGAACTTGGGGGGGGCAGGGGGAGGG
AGGGAGGGAAGAAGGAGGGAGGCTGCGTGCGTGCGTGTGAAGCTTCTGGG
GAAGGAGAGACGGAGGTATTACAGTA

Coding sequence (CDS) from alignment at scaffold_4:1344765..1346540+

>mRNA_2300 ID=mRNA_2300|Name=jgi.p|Nanoce1779_2|579853|organism=Nannochloropsis oceanica|type=CDS|length=4452bp|location=Sequence derived from alignment at scaffold_4:1344765..1346540+ (Nannochloropsis oceanica)
ATGCGTGTCCTTGTGCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTT
CCTACTCCCCACCCTTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCG
GCCGTGCTCTGGCCTCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAG
AGCAAGGAGGCAAGTGCGATCTCTTTGAAAGGCCTAGGCGAGCTGGATGA
TGGCGAGAACTCCGGAGCACGGGCAGCAAACGCAAGCGATAAGGACAGCA
TGAAACTCGAGCCGGAGGTCGTCTTCTTTGAGGGACCCCCGCATTGGAGT
GAGGTGGTTGTGCCGGCCATCTCCATCCTGACCGTAATTGGCATCATTCC
CTTCGCCTCCTCTGTCGCCCGACAGATCTGGGTGAAGTATAAGATCACCT
CTCGCCGCGGCGTGGGTGGGAAGGACTTGACGGAGGTCATCTACGCCGAC
ATCGAACGCGTCAACTACGTCTTCCGCTCTTTCGGCACTACTGGCGATAT
GGTCCTCTTTCTAAGGGATGGCGCCAAGGTCGAGATGCGCTCCATTCCCA
ATTTCCGCGAGGTCTACACTTACATCCGGGATATGCTGGACGAGGACGCC
AAGGCGAAAACCGCCGTCCTTCCCGAGCTAAAATAAATGCGTGTCCTTGT
GCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCTACTCCCCACCC
TTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCGGCCGTGCTCTGGCC
TCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGCAAGGAGGCAAG
TGCGATCTCTTTGAAAGGCCTAGGCGAGCTGGATGATGGCGAGAACTCCG
GAGCACGGGCAGCAAACGCAAGCGATAAGGACAGCATGAAACTCGAGCCG
GAGGTCGTCTTCTTTGAGGGACCCCCGCATTGGAGTGAGGTGGTTGTGCC
GGCCATCTCCATCCTGACCGTAATTGGCATCATTCCCTTCGCCTCCTCTG
TCGCCCGACAGATCTGGGTGAAGTATAAGATCACCTCTCGCCGCGGCGTG
GGTGGGAAGGACTTGACGGAGGTCATCTACGCCGACATCGAACGCGTCAA
CTACGTCTTCCGCTCTTTCGGCACTACTGGCGATATGGTCCTCTTTCTAA
GGGATGGCGCCAAGGTCGAGATGCGCTCCATTCCCAATTTCCGCGAGGTC
TACACTTACATCCGGGATATGCTGGACGAGGACGCCAAGGCGAAAACCGC
CGTCCTTCCCGAGCTAAAATAAATGCGTGTCCTTGTGCCGCTCATTTCGC
TCTTCTCCTTGTCGAGCGCCTTCCTACTCCCCACCCTTCCTTCCTCCACC
TCGCCCCTCTCTTCCACCCGCGGCCGTGCTCTGGCCTCTTCCGCCTCTGA
AGAGCTGTCACGCAAGGAGAAGAGCAAGGAGGCAAGTGCGATCTCTTTGA
AAGGCCTAGGCGAGCTGGATGATGGCGAGAACTCCGGAGCACGGGCAGCA
AACGCAAGCGATAAGGACAGCATGAAACTCGAGCCGGAGGTCGTCTTCTT
TGAGGGACCCCCGCATTGGAGTGAGGTGGTTGTGCCGGCCATCTCCATCC
TGACCGTAATTGGCATCATTCCCTTCGCCTCCTCTGTCGCCCGACAGATC
TGGGTGAAGTATAAGATCACCTCTCGCCGCGGCGTGGGTGGGAAGGACTT
GACGGAGGTCATCTACGCCGACATCGAACGCGTCAACTACGTCTTCCGCT
CTTTCGGCACTACTGGCGATATGGTCCTCTTTCTAAGGGATGGCGCCAAG
GTCGAGATGCGCTCCATTCCCAATTTCCGCGAGGTCTACACTTACATCCG
GGATATGCTGGACGAGGACGCCAAGGCGAAAACCGCCGTCCTTCCCGAGC
TAAAATAAATGCGTGTCCTTGTGCCGCTCATTTCGCTCTTCTCCTTGTCG
AGCGCCTTCCTACTCCCCACCCTTCCTTCCTCCACCTCGCCCCTCTCTTC
CACCCGCGGCCGTGCTCTGGCCTCTTCCGCCTCTGAAGAGCTGTCACGCA
AGGAGAAGAGCAAGGAGGCAAGTGCGATCTCTTTGAAAGGCCTAGGCGAG
CTGGATGATGGCGAGAACTCCGGAGCACGGGCAGCAAACGCAAGCGATAA
GGACAGCATGAAACTCGAGCCGGAGGTCGTCTTCTTTGAGGGACCCCCGC
ATTGGAGTGAGGTGGTTGTGCCGGCCATCTCCATCCTGACCGTAATTGGC
ATCATTCCCTTCGCCTCCTCTGTCGCCCGACAGATCTGGGTGAAGTATAA
GATCACCTCTCGCCGCGGCGTGGGTGGGAAGGACTTGACGGAGGTCATCT
ACGCCGACATCGAACGCGTCAACTACGTCTTCCGCTCTTTCGGCACTACT
GGCGATATGGTCCTCTTTCTAAGGGATGGCGCCAAGGTCGAGATGCGCTC
CATTCCCAATTTCCGCGAGGTCTACACTTACATCCGGGATATGCTGGACG
AGGACGCCAAGGCGAAAACCGCCGTCCTTCCCGAGCTAAAATAAATGCGT
GTCCTTGTGCCGCTCATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCTACT
CCCCACCCTTCCTTCCTCCACCTCGCCCCTCTCTTCCACCCGCGGCCGTG
CTCTGGCCTCTTCCGCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGCAAG
GAGGCAAGTGCGATCTCTTTGAAAGGCCTAGGCGAGCTGGATGATGGCGA
GAACTCCGGAGCACGGGCAGCAAACGCAAGCGATAAGGACAGCATGAAAC
TCGAGCCGGAGGTCGTCTTCTTTGAGGGACCCCCGCATTGGAGTGAGGTG
GTTGTGCCGGCCATCTCCATCCTGACCGTAATTGGCATCATTCCCTTCGC
CTCCTCTGTCGCCCGACAGATCTGGGTGAAGTATAAGATCACCTCTCGCC
GCGGCGTGGGTGGGAAGGACTTGACGGAGGTCATCTACGCCGACATCGAA
CGCGTCAACTACGTCTTCCGCTCTTTCGGCACTACTGGCGATATGGTCCT
CTTTCTAAGGGATGGCGCCAAGGTCGAGATGCGCTCCATTCCCAATTTCC
GCGAGGTCTACACTTACATCCGGGATATGCTGGACGAGGACGCCAAGGCG
AAAACCGCCGTCCTTCCCGAGCTAAAATAAATGCGTGTCCTTGTGCCGCT
CATTTCGCTCTTCTCCTTGTCGAGCGCCTTCCTACTCCCCACCCTTCCTT
CCTCCACCTCGCCCCTCTCTTCCACCCGCGGCCGTGCTCTGGCCTCTTCC
GCCTCTGAAGAGCTGTCACGCAAGGAGAAGAGCAAGGAGGCAAGTGCGAT
CTCTTTGAAAGGCCTAGGCGAGCTGGATGATGGCGAGAACTCCGGAGCAC
GGGCAGCAAACGCAAGCGATAAGGACAGCATGAAACTCGAGCCGGAGGTC
GTCTTCTTTGAGGGACCCCCGCATTGGAGTGAGGTGGTTGTGCCGGCCAT
CTCCATCCTGACCGTAATTGGCATCATTCCCTTCGCCTCCTCTGTCGCCC
GACAGATCTGGGTGAAGTATAAGATCACCTCTCGCCGCGGCGTGGGTGGG
AAGGACTTGACGGAGGTCATCTACGCCGACATCGAACGCGTCAACTACGT
CTTCCGCTCTTTCGGCACTACTGGCGATATGGTCCTCTTTCTAAGGGATG
GCGCCAAGGTCGAGATGCGCTCCATTCCCAATTTCCGCGAGGTCTACACT
TACATCCGGGATATGCTGGACGAGGACGCCAAGGCGAAAACCGCCGTCCT
TCCCGAGCTAAAATAAATGCGTGTCCTTGTGCCGCTCATTTCGCTCTTCT
CCTTGTCGAGCGCCTTCCTACTCCCCACCCTTCCTTCCTCCACCTCGCCC
CTCTCTTCCACCCGCGGCCGTGCTCTGGCCTCTTCCGCCTCTGAAGAGCT
GTCACGCAAGGAGAAGAGCAAGGAGGCAAGTGCGATCTCTTTGAAAGGCC
TAGGCGAGCTGGATGATGGCGAGAACTCCGGAGCACGGGCAGCAAACGCA
AGCGATAAGGACAGCATGAAACTCGAGCCGGAGGTCGTCTTCTTTGAGGG
ACCCCCGCATTGGAGTGAGGTGGTTGTGCCGGCCATCTCCATCCTGACCG
TAATTGGCATCATTCCCTTCGCCTCCTCTGTCGCCCGACAGATCTGGGTG
AAGTATAAGATCACCTCTCGCCGCGGCGTGGGTGGGAAGGACTTGACGGA
GGTCATCTACGCCGACATCGAACGCGTCAACTACGTCTTCCGCTCTTTCG
GCACTACTGGCGATATGGTCCTCTTTCTAAGGGATGGCGCCAAGGTCGAG
ATGCGCTCCATTCCCAATTTCCGCGAGGTCTACACTTACATCCGGGATAT
GCTGGACGAGGACGCCAAGGCGAAAACCGCCGTCCTTCCCGAGCTAAAAT
AA

Synonyms

Publications