jgi.p|Nanoce1779_2|576607, mRNA_230 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576607
Unique Name	mRNA_230
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2106
Alignment location	scaffold_3:571648..573753 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576693
Track	FilteredModels2
ProteinId	576607

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:571648..573753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576607	gene_230	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576607	mRNA_230-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_230	CDS_230	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:571648..573753+
coding sequence from alignment at scaffold_3:571648..573753+

mRNA sequence

>mRNA_230 ID=mRNA_230|Name=jgi.p|Nanoce1779_2|576607|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp
AGATAGTTAGGTAGATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAA
AGTGAGCGGGCACCTCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGC
AAGCGATGTCGACAGTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGG
CTGCGCAAATCTACCCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGG
TCTGTAGCTTACGGATATATCACGCCTATTCTCGTCACATTTAATCTCAG
CATCGAAACGGTTGGCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTA
TGACGGTACCCCTCATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGG
GGCCGACGGCGGCCGTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGG
ACTTATTCTTTTGGCGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATA
CAAACGAAGAGCAGAGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATC
CTAGGGCAAGTGGGGCTCGACGGGATACAAGGGATGGAACGGGGGCTTTG
CACGGACACATTGGAGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTG
CCTTGCAGGGCAGCTTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATC
AACCTGGCCAAGGCGCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGAT
TCTCTTTCTTCTTTCAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCT
TGGTGACCTCAGTAGAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTC
AATGGTAGTTTTGTCTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTC
CCTCCCGAAAGCCGTGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGA
GTGCCTTTGCCCTTTTGTTTTACTATGGCTCTTACTTTTACGGCGCCTAC
ATTTATGGAGGGAATCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGA
GCGCGGAGTACAAGCAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGG
CCAGTTTCACATCGCTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTG
AAACGGGTCTGGGTAGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGG
CCTGTTCTTCCTGCAGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTG
CCTGCTTAGGGCTGCCACTGGCTGCGAGTTACCAATGTCCATGGTCAATC
GTGACAGTGGCAGTTCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCT
GTTTAGAAGCATCAGCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGG
GCTCGCTGCTGCTCAGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTT
GCGGCGTCGGTGCTCATGGCCGTGGCTGGGGTCTACACGCATATATGTGT
CCTAGATGTACAAGACGTGGAAGAGTACGAGGAAGAGATGTGATGGGTGT
TGTGAATAAAACATGTAGATGTGCAATGGGACGAAAAGTAAGAAATTCTT
TTTTTCTATTTTCTCTGATGGTACGCTATTAAGACCGCAAGCATTGGATC
TATACAATATATGTATATGATGTATGTATTGACCTTGTCTCATCTTGTAT
ATACACTTCAGATGACAGCCCATGTCCTTCCGCCCCGGTTTCCACCTCAC
CCTCTCCGCTCTAAAACCTGCAGTCTCAGGTACAACTCAGACAAGGGTCC
ACAATTTCGCCGGCGCCAGCCTCGACCAAAACTCCACCACCGGCCACGTC
CACCGGGCCCAATCCACTGCCGTCCTTGTCGCTGACGCCCCCGCAAAACA
TACCGTCATGAAAAAATACCCCGGTGCCCTTCATTCTCCTAGCTCCTCCA
GCCACTGTCGCCATGATGTATGCATCCTCGACATGCCACAGAGCCAGATC
CAGACCCTCCGTCAGGACGCTGACATGGAGGTACAGTGCCACGCGAAGCA
CGTATCGACAGGGCTACCTTTTGATGTATAAGTAGCCGCAGGAGCACCTG
CACTTTGTGATAATCACGCCCTTGTTGGTCTTCTCATACCACCTCCATGA
AGCGGC

protein sequence of jgi.p|Nanoce1779_2|576607

>mRNA_230-protein ID=mRNA_230-protein|Name=jgi.p|Nanoce1779_2|576607|organism=Nannochloropsis oceanica|type=polypeptide|length=493bp
MPWRWDSSSTIKSERAPLMPKVQASSVGASDVDSDAGDSRTPWCLAAQIY
PTFAFLGVQMCWSVAYGYITPILVTFNLSIETVGIVWFFSSLASCMTVPL
ISAASDFSQNTWGRRRPFLGGFLLVGAGGLILLAYAESLGVWLGDTNEEQ
RYALSMAVIGLILGQVGLDGIQGMERGLCTDTLEADALQGVNSFFALQGS
LGRLLGFGLGSINLAKAPGLSYLGSQTQILFLLSAGVLFVTTCGTLVTSV
EKHFTPQLYELFNGSFVSSAKRAVFGMKSLPKAVRLAAVSNLLAWSAFAL
LFYYGSYFYGAYIYGGNPEDTGKPDSLYERGVQAASFAFLLMAVVASFTS
LVLGSLAARVGLKRVWVASLVCAAAVFLGLFFLQPGNKDAALALFACLGL
PLAASYQCPWSIVTVAVRRSENSALYCSLFRSISEVLPFALQGLLGSLLL
SLFQGSAREVFVAASVLMAVAGVYTHICVLDVQDVEEYEEEM*

mRNA from alignment at scaffold_3:571648..573753+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_230 ID=mRNA_230|Name=jgi.p|Nanoce1779_2|576607|organism=Nannochloropsis oceanica|type=mRNA|length=2106bp|location=Sequence derived from alignment at scaffold_3:571648..573753+ (Nannochloropsis oceanica)
AGATAGTTAGGTAGATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAA
AGTGAGCGGGCACCTCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGC
AAGCGATGTCGACAGTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGG
CTGCGCAAATCTACCCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGG
TCTGTAGCTTACGGATATATCACGCCTATTCTCGTCACATTTAATCTCAG
CATCGAAACGGTTGGCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTA
TGACGGTACCCCTCATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGG
GGCCGACGGCGGCCGTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGG
ACTTATTCTTTTGGCGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATA
CAAACGAAGAGCAGAGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATC
CTAGGGCAAGTGGGGCTCGACGGGATACAAGGGATGGAACGGGGGCTTTG
CACGGACACATTGGAGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTG
CCTTGCAGGGCAGCTTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATC
AACCTGGCCAAGGCGCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGAT
TCTCTTTCTTCTTTCAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCT
TGGTGACCTCAGTAGAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTC
AATGGTAGTTTTGTCTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTC
CCTCCCGAAAGCCGTGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGA
GTGCCTTTGCCCTTTTGTTTTACTATGGCTCTTACTTTTACGGCGCCTAC
ATTTATGGAGGGAATCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGA
GCGCGGAGTACAAGCAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGG
CCAGTTTCACATCGCTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTG
AAACGGGTCTGGGTAGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGG
CCTGTTCTTCCTGCAGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTG
CCTGCTTAGGGCTGCCACTGGCTGCGAGTTACCAATGTCCATGGTCAATC
GTGACAGTGGCAGTTCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCT
GTTTAGAAGCATCAGCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGG
GCTCGCTGCTGCTCAGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTT
GCGGCGTCGGTGCTCATGGCCGTGGCTGGGGTCTACACGCATATATGTGT
CCTAGATGTACAAGACGTGGAAGAGTACGAGGAAGAGATGTGATGGGTGT
TGTGAATAAAACATGTAGATGTGCAATGGGACGAAAAGTAAGAAATTCTT
TTTTTCTATTTTCTCTGATGGTACGCTATTAAGACCGCAAGCATTGGATC
TATACAATATATGTATATGATGTATGTATTGACCTTGTCTCATCTTGTAT
ATACACTTCAGATGACAGCCCATGTCCTTCCGCCCCGGTTTCCACCTCAC
CCTCTCCGCTCTAAAACCTGCAGTCTCAGGTACAACTCAGACAAGGGTCC
ACAATTTCGCCGGCGCCAGCCTCGACCAAAACTCCACCACCGGCCACGTC
CACCGGGCCCAATCCACTGCCGTCCTTGTCGCTGACGCCCCCGCAAAACA
TACCGTCATGAAAAAATACCCCGGTGCCCTTCATTCTCCTAGCTCCTCCA
GCCACTGTCGCCATGATGTATGCATCCTCGACATGCCACAGAGCCAGATC
CAGACCCTCCGTCAGGACGCTGACATGGAGGTACAGTGCCACGCGAAGCA
CGTATCGACAGGGCTACCTTTTGATGTATAAGTAGCCGCAGGAGCACCTG
CACTTTGTGATAATCACGCCCTTGTTGGTCTTCTCATACCACCTCCATGA
AGCGGC

Coding sequence (CDS) from alignment at scaffold_3:571648..573753+

>mRNA_230 ID=mRNA_230|Name=jgi.p|Nanoce1779_2|576607|organism=Nannochloropsis oceanica|type=CDS|length=1479bp|location=Sequence derived from alignment at scaffold_3:571648..573753+ (Nannochloropsis oceanica)
ATGCCTTGGCGGTGGGATTCGAGCTCGACCATCAAAAGTGAGCGGGCACC
TCTGATGCCAAAGGTTCAAGCTTCCTCAGTGGGCGCAAGCGATGTCGACA
GTGATGCAGGGGACAGCCGCACTCCGTGGTGCTTGGCTGCGCAAATCTAC
CCAACGTTCGCGTTTCTGGGCGTTCAGATGTGTTGGTCTGTAGCTTACGG
ATATATCACGCCTATTCTCGTCACATTTAATCTCAGCATCGAAACGGTTG
GCATTGTGTGGTTCTTCTCCTCCTTGGCAAGCTGTATGACGGTACCCCTC
ATATCGGCGGCCAGCGACTTCTCCCAAAACACGTGGGGCCGACGGCGGCC
GTTTTTGGGAGGATTTTTACTAGTGGGGGCTGGCGGACTTATTCTTTTGG
CGTACGCCGAGTCGCTGGGAGTGTGGCTGGGAGATACAAACGAAGAGCAG
AGGTATGCGCTCAGCATGGCCGTCATAGGTTTGATCCTAGGGCAAGTGGG
GCTCGACGGGATACAAGGGATGGAACGGGGGCTTTGCACGGACACATTGG
AGGCGGATGCGTTGCAAGGTGTCAATTCCTTCTTTGCCTTGCAGGGCAGC
TTGGGAAGACTGTTGGGTTTTGGATTGGGATCTATCAACCTGGCCAAGGC
GCCTGGCCTCTCATACCTCGGTAGCCAAACCCAGATTCTCTTTCTTCTTT
CAGCCGGCGTCTTGTTTGTGACGACGTGCGGAACCTTGGTGACCTCAGTA
GAAAAGCACTTTACTCCTCAGCTTTATGAACTCTTCAATGGTAGTTTTGT
CTCCTCGGCCAAAAGGGCGGTGTTTGGAATGAAGTCCCTCCCGAAAGCCG
TGCGTCTCGCGGCAGTGTCTAACCTCCTGGCCTGGAGTGCCTTTGCCCTT
TTGTTTTACTATGGCTCTTACTTTTACGGCGCCTACATTTATGGAGGGAA
TCCAGAGGATACGGGTAAGCCCGATTCCTTGTATGAGCGCGGAGTACAAG
CAGCAAGTTTTGCATTCTTGCTGATGGCAGTGGTGGCCAGTTTCACATCG
CTGGTTTTGGGATCATTGGCGGCGAGAGTAGGTTTGAAACGGGTCTGGGT
AGCGTCGCTGGTATGTGCTGCGGCCGTGTTTCTGGGCCTGTTCTTCCTGC
AGCCGGGAAACAAGGATGCAGCCCTGGCACTCTTTGCCTGCTTAGGGCTG
CCACTGGCTGCGAGTTACCAATGTCCATGGTCAATCGTGACAGTGGCAGT
TCGACGCTCAGAAAACTCGGCTTTATACTGCAGCCTGTTTAGAAGCATCA
GCGAGGTGCTGCCATTCGCTCTTCAAGGGTTGCTGGGCTCGCTGCTGCTC
AGCCTCTTTCAAGGGAGTGCACGGGAGGTTTTTGTTGCGGCGTCGGTGCT
CATGGCCGTGGCTGGGGTCTACACGCATATATGTGTCCTAGATGTACAAG
ACGTGGAAGAGTACGAGGAAGAGATGTGA

Synonyms

Publications