jgi.p|Nanoce1779_2|563034, mRNA_23 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563034
Unique NamemRNA_23
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length609
Alignment locationscaffold_3:72729..73337 +

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Properties
Property NameValue
TranscriptId563120
TrackFilteredModels2
ProteinId563034
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:72729..73337 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563034gene_23Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563034mRNA_23-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_23CDS_23Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_23 ID=mRNA_23|Name=jgi.p|Nanoce1779_2|563034|organism=Nannochloropsis oceanica|type=mRNA|length=609bp
ATGAATTCTGTGCAAGCATCGCCTGACCGTCTCTTGCTTCTGCAACATCC
TCCGACCTACACCCTGGGCACGGGTAGCACGCCCACCAATCTTCTTTTTG
ATCCTTCCGATCCTTCCACCGCACCGGCTGCGCTGTTCAAGACAGAACGG
GGCGGGGAAGCAACGTGGCATGGACCAGGGCAACTGGTCGCCTACCCACT
CTTAGATCTCAAACATTACCGACAGGACTTGCATTGGTATCTAAGGGCGC
TGGAAGAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGG
AGGGAGGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGC
GGTCGGCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGA
ATGTGGATCCCTCCATGGACTATTTCAAGCACATTGTGCCATGTGGTATT
GGGGATCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGG
CAAGGAGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTT
TCGAGGACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAA
GAAAACTAG
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protein sequence of jgi.p|Nanoce1779_2|563034

>mRNA_23-protein ID=mRNA_23-protein|Name=jgi.p|Nanoce1779_2|563034|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MNSVQASPDRLLLLQHPPTYTLGTGSTPTNLLFDPSDPSTAPAALFKTER
GGEATWHGPGQLVAYPLLDLKHYRQDLHWYLRALEEVVIQTLAPLGIEGG
REEGLTGVWVEGHKVAAVGVKVKRWVTMHGVALNVDPSMDYFKHIVPCGI
GDRPVGSVMNFWKGESGKEVITVEEVALLMKRAFEDVFGVVLVDAEHSGE
EN*
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mRNA from alignment at scaffold_3:72729..73337+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_23 ID=mRNA_23|Name=jgi.p|Nanoce1779_2|563034|organism=Nannochloropsis oceanica|type=mRNA|length=609bp|location=Sequence derived from alignment at scaffold_3:72729..73337+ (Nannochloropsis oceanica)
ATGAATTCTGTGCAAGCATCGCCTGACCGTCTCTTGCTTCTGCAACATCC
TCCGACCTACACCCTGGGCACGGGTAGCACGCCCACCAATCTTCTTTTTG
ATCCTTCCGATCCTTCCACCGCACCGGCTGCGCTGTTCAAGACAGAACGG
GGCGGGGAAGCAACGTGGCATGGACCAGGGCAACTGGTCGCCTACCCACT
CTTAGATCTCAAACATTACCGACAGGACTTGCATTGGTATCTAAGGGCGC
TGGAAGAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGG
AGGGAGGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGC
GGTCGGCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGA
ATGTGGATCCCTCCATGGACTATTTCAAGCACATTGTGCCATGTGGTATT
GGGGATCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGG
CAAGGAGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTT
TCGAGGACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAA
GAAAACTAG
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Coding sequence (CDS) from alignment at scaffold_3:72729..73337+

>mRNA_23 ID=mRNA_23|Name=jgi.p|Nanoce1779_2|563034|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_3:72729..73337+ (Nannochloropsis oceanica)
ATGAATTCTGTGCAAGCATCGCCTGACCGTCTCTTGCTTCTGCAACATCC
TCCGACCTACACCCTGGGCACGGGTAGCACGCCCACCAATCTTCTTTTTG
ATCCTTCCGATCCTTCCACCGCACCGGCTGCGCTGTTCAAGACAGAACGG
GGCGGGGAAGCAACGTGGCATGGACCAGGGCAACTGGTCGCCTACCCACT
CTTAGATCTCAAACATTACCGACAGGACTTGCATTGGTATCTAAGGGCGC
TGGAAGAGGTGGTAATTCAGACACTAGCCCCTTTGGGCATCGAGGGTGGG
AGGGAGGAGGGACTGACGGGTGTTTGGGTTGAGGGGCATAAGGTGGCGGC
GGTCGGCGTGAAGGTCAAGCGGTGGGTGACTATGCATGGGGTGGCCCTGA
ATGTGGATCCCTCCATGGACTATTTCAAGCACATTGTGCCATGTGGTATT
GGGGATCGGCCTGTAGGCTCGGTAATGAACTTTTGGAAAGGGGAATCCGG
CAAGGAGGTTATAACGGTTGAGGAGGTGGCGTTGTTGATGAAACGCGCTT
TCGAGGACGTATTTGGGGTTGTTTTGGTTGACGCGGAACATAGTGGCGAA
GAAAACTAG
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Synonyms
Publications