jgi.p|Nanoce1779_2|579809, mRNA_2299 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579809
Unique NamemRNA_2299
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length715
Alignment locationscaffold_4:1323431..1324145 +

Link to JBrowse

Properties
Property NameValue
TranscriptId579895
TrackFilteredModels2
ProteinId579809
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1323431..1324145 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579809gene_2299Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579809mRNA_2299-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2299CDS_2299Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2299 ID=mRNA_2299|Name=jgi.p|Nanoce1779_2|579809|organism=Nannochloropsis oceanica|type=mRNA|length=715bp
TGGGCTTGCAAGGCAGAGAAGAGGACCTTGCGGCTCTTGGAGTTTGGGAT
GGAAGAAAAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGAGGAAGGCGTGG
CCTCGGAAGGCGAAAAGCGCATTTGCTTGCTGCTCCGCCGCGTGCTGCCT
GTCCGGCTGAGGGGTGTGTTCCTGTCATCACCACTTTTTCTTCTTCTTTT
CCTTGTATTTGAAACACCGTTGCCAGAGGAGGGGAATGATGATGGCGATG
ATGGTGGGGGAGGCGGAGGTGGGACAAATGAGGAACACAGGCCGCTGCTG
ATGACTGTCTCTAGCCCTAGATGTCTTCTTCTTATTGGGTGCCCAGACGT
CGTTGCTATCCATCTGCTGTTGCCGGCCTCAACACTGCCTGTCGAGCTGG
CCGTGGGTTCCATCATTAAAATGATGGAAAGAAGGATAAGGATTATCGAT
AGGGGCACCGCGCCGGTAGCCCGCCATCTTGATTGCTGCGCCGGGGGTAT
TGCTGCTTGCTCCGTTTGCATCTTGTGGAAGTGAAGTTGACCTTGCTCAG
AAGTGCGAAAATGAACAGCGGTGGCGGGCAGGGAAGTAGGTGCCTGTGAC
CTAAGTGCCTAAATGGAAATGCAGGGCATTTGTAGGCCACCTGCATGTGT
GGTGGGTGGACGTGGGTGTAAGATGCTTGAGAACTACAATCAGAAAAGTC
GCACCGACACTGACG
back to top

protein sequence of jgi.p|Nanoce1779_2|579809

>mRNA_2299-protein ID=mRNA_2299-protein|Name=jgi.p|Nanoce1779_2|579809|organism=Nannochloropsis oceanica|type=polypeptide|length=162bp
MEEKEEEEEEEKEEEGVASEGEKRICLLLRRVLPVRLRGVFLSSPLFLLL
FLVFETPLPEEGNDDGDDGGGGGGGTNEEHRPLLMTVSSPRCLLLIGCPD
VVAIHLLLPASTLPVELAVGSIIKMMERRIRIIDRGTAPVARHLDCCAGG
IAACSVCILWK*
back to top

mRNA from alignment at scaffold_4:1323431..1324145+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2299 ID=mRNA_2299|Name=jgi.p|Nanoce1779_2|579809|organism=Nannochloropsis oceanica|type=mRNA|length=715bp|location=Sequence derived from alignment at scaffold_4:1323431..1324145+ (Nannochloropsis oceanica)
TGGGCTTGCAAGGCAGAGAAGAGGACCTTGCGGCTCTTGGAGTTTGGGAT
GGAAGAAAAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGAGGAAGGCGTGG
CCTCGGAAGGCGAAAAGCGCATTTGCTTGCTGCTCCGCCGCGTGCTGCCT
GTCCGGCTGAGGGGTGTGTTCCTGTCATCACCACTTTTTCTTCTTCTTTT
CCTTGTATTTGAAACACCGTTGCCAGAGGAGGGGAATGATGATGGCGATG
ATGGTGGGGGAGGCGGAGGTGGGACAAATGAGGAACACAGGCCGCTGCTG
ATGACTGTCTCTAGCCCTAGATGTCTTCTTCTTATTGGGTGCCCAGACGT
CGTTGCTATCCATCTGCTGTTGCCGGCCTCAACACTGCCTGTCGAGCTGG
CCGTGGGTTCCATCATTAAAATGATGGAAAGAAGGATAAGGATTATCGAT
AGGGGCACCGCGCCGGTAGCCCGCCATCTTGATTGCTGCGCCGGGGGTAT
TGCTGCTTGCTCCGTTTGCATCTTGTGGAAGTGAAGTTGACCTTGCTCAG
AAGTGCGAAAATGAACAGCGGTGGCGGGCAGGGAAGTAGGTGCCTGTGAC
CTAAGTGCCTAAATGGAAATGCAGGGCATTTGTAGGCCACCTGCATGTGT
GGTGGGTGGACGTGGGTGTAAGATGCTTGAGAACTACAATCAGAAAAGTC
GCACCGACACTGACG
back to top

Coding sequence (CDS) from alignment at scaffold_4:1323431..1324145+

>mRNA_2299 ID=mRNA_2299|Name=jgi.p|Nanoce1779_2|579809|organism=Nannochloropsis oceanica|type=CDS|length=486bp|location=Sequence derived from alignment at scaffold_4:1323431..1324145+ (Nannochloropsis oceanica)
ATGGAAGAAAAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGAGGAAGGCGT
GGCCTCGGAAGGCGAAAAGCGCATTTGCTTGCTGCTCCGCCGCGTGCTGC
CTGTCCGGCTGAGGGGTGTGTTCCTGTCATCACCACTTTTTCTTCTTCTT
TTCCTTGTATTTGAAACACCGTTGCCAGAGGAGGGGAATGATGATGGCGA
TGATGGTGGGGGAGGCGGAGGTGGGACAAATGAGGAACACAGGCCGCTGC
TGATGACTGTCTCTAGCCCTAGATGTCTTCTTCTTATTGGGTGCCCAGAC
GTCGTTGCTATCCATCTGCTGTTGCCGGCCTCAACACTGCCTGTCGAGCT
GGCCGTGGGTTCCATCATTAAAATGATGGAAAGAAGGATAAGGATTATCG
ATAGGGGCACCGCGCCGGTAGCCCGCCATCTTGATTGCTGCGCCGGGGGT
ATTGCTGCTTGCTCCGTTTGCATCTTGTGGAAGTGA
back to top
Synonyms
Publications