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Properties
| Property Name | Value |
|---|
| TranscriptId | 579893 |
| Track | FilteredModels2 |
| ProteinId | 579807 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1322124..1323457 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2298 ID=mRNA_2298|Name=jgi.p|Nanoce1779_2|579807|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp
GGTCCTCTTCTCTGCCTTGCAAGCCCAATCTTCAACACTACCACGTGAGG
CCCCCGCCCTTCCTCCCCCTCTCCCTCCCTCCTTCCTCTCCACCGCCCCC
TCCACCCGCGGCAAAACCATTTTCAGTGGCCTCCAACAAATCTGGACGAG
TCTTAAAGGCGGCAGGGGGAAGGCGGACCCTGATGGGGGGGGGGAAGGCG
GGGGAGGGGATAATACGGCCTTCAAAGCCATGCTCGCCTCGGTTGCCGTC
ATATACGGTACCAATTTTGGAGCCATCAAATACCTGGATGAAGCCAACGT
GGACGTCTCCATTGTCACGGCAATCCGTTTTGCCCTGGCCTCGCTGGCCC
TGTGCCCTTTCCTCTACAAAGCTCCTTGGCCAGTGGTGTTGCGTGGGATT
GAGGTAGGGGTGTGGGTATCCGTAGGCTACATTGCCCAGGCCATTGGTCT
TCAAACCACGCAAGCCTCCAAGTCGGCCTTCATCTGCTCCCTCGCCGTCG
TAGTCGTCCCCATTGTCAATGCCATTATTTACAAGAAGAAAGCCCCTCCC
ACCACCTGGCTGGCCTCCCTCCTCGCCGTGGCTGGCGTCGGCCTCCTCAC
CCTCGAAGGGAAGGGCAACCCCCCCTGCATTGGCGACCTATGGTCCCTAG
GACAGCCTATAGGCTTCGGAATCGCCTTTGTTCGCACAGAACAATGCATG
CAAGCCAATAAGGGCGAGGCCCTGGCCATGACAGCTTCGCAGATGGCGGC
AGTCTTGGCATGCTCCATGCTTTGGGTCTCCTTCACCCTCACGTCCAACA
CACCCGACCTAAGCGTCCTGTACGAGCCAGTAAATCTCGCGGCCTTGTTC
TACACGGGTGTCATCACCAGTGGCGTCGCCGTCGTGGCGGAGAGCGTCGC
CCTGGCCCATATTTCCGCCGAGGAGACTACCGTGATCCTGTCGACGGAGC
CGCTGTGGGCTGCCCTGTTCGGGTCAGTGATATTGGGGGAGACAATGAGT
GGATTTGGCTATTTGGGAGGGGCTGTGATATTGCTCGGGTGCTTGGTGAC
TCAGTTGAAGCTGCCGAAGACTTTAGAGAAGCTGCTGAAGCCGTGGGGGG
AAGGAGTGGAGGAGGCAGGGGAGGATTGAGGTATGTAATGCAGAACGAGG
AGGAGGAGGAGTGGTGGTAGTAGTAGCAGCAGTCACAACAGCAGCGGCTG
GAGCGGCAGATGGATGGAAATAAATGTCAGTGTTCACAAAAAGGAAAGGG
AATAAATGACAAAGGGAAAAGTAAGAGAGGTACAGAGATACTATAAGTCA
AAGATAAATACGCAGAGATTAACCGACTGAAGAT back to topprotein sequence of jgi.p|Nanoce1779_2|579807 >mRNA_2298-protein ID=mRNA_2298-protein|Name=jgi.p|Nanoce1779_2|579807|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MLASVAVIYGTNFGAIKYLDEANVDVSIVTAIRFALASLALCPFLYKAPW
PVVLRGIEVGVWVSVGYIAQAIGLQTTQASKSAFICSLAVVVVPIVNAII
YKKKAPPTTWLASLLAVAGVGLLTLEGKGNPPCIGDLWSLGQPIGFGIAF
VRTEQCMQANKGEALAMTASQMAAVLACSMLWVSFTLTSNTPDLSVLYEP
VNLAALFYTGVITSGVAVVAESVALAHISAEETTVILSTEPLWAALFGSV
ILGETMSGFGYLGGAVILLGCLVTQLKLPKTLEKLLKPWGEGVEEAGED* back to topmRNA from alignment at scaffold_4:1322124..1323457- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2298 ID=mRNA_2298|Name=jgi.p|Nanoce1779_2|579807|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at scaffold_4:1322124..1323457- (Nannochloropsis oceanica)
GGTCCTCTTCTCTGCCTTGCAAGCCCAATCTTCAACACTACCACGTGAGG
CCCCCGCCCTTCCTCCCCCTCTCCCTCCCTCCTTCCTCTCCACCGCCCCC
TCCACCCGCGGCAAAACCATTTTCAGTGGCCTCCAACAAATCTGGACGAG
TCTTAAAGGCGGCAGGGGGAAGGCGGACCCTGATGGGGGGGGGGAAGGCG
GGGGAGGGGATAATACGGCCTTCAAAGCCATGCTCGCCTCGGTTGCCGTC
ATATACGGTACCAATTTTGGAGCCATCAAATACCTGGATGAAGCCAACGT
GGACGTCTCCATTGTCACGGCAATCCGTTTTGCCCTGGCCTCGCTGGCCC
TGTGCCCTTTCCTCTACAAAGCTCCTTGGCCAGTGGTGTTGCGTGGGATT
GAGGTAGGGGTGTGGGTATCCGTAGGCTACATTGCCCAGGCCATTGGTCT
TCAAACCACGCAAGCCTCCAAGTCGGCCTTCATCTGCTCCCTCGCCGTCG
TAGTCGTCCCCATTGTCAATGCCATTATTTACAAGAAGAAAGCCCCTCCC
ACCACCTGGCTGGCCTCCCTCCTCGCCGTGGCTGGCGTCGGCCTCCTCAC
CCTCGAAGGGAAGGGCAACCCCCCCTGCATTGGCGACCTATGGTCCCTAG
GACAGCCTATAGGCTTCGGAATCGCCTTTGTTCGCACAGAACAATGCATG
CAAGCCAATAAGGGCGAGGCCCTGGCCATGACAGCTTCGCAGATGGCGGC
AGTCTTGGCATGCTCCATGCTTTGGGTCTCCTTCACCCTCACGTCCAACA
CACCCGACCTAAGCGTCCTGTACGAGCCAGTAAATCTCGCGGCCTTGTTC
TACACGGGTGTCATCACCAGTGGCGTCGCCGTCGTGGCGGAGAGCGTCGC
CCTGGCCCATATTTCCGCCGAGGAGACTACCGTGATCCTGTCGACGGAGC
CGCTGTGGGCTGCCCTGTTCGGGTCAGTGATATTGGGGGAGACAATGAGT
GGATTTGGCTATTTGGGAGGGGCTGTGATATTGCTCGGGTGCTTGGTGAC
TCAGTTGAAGCTGCCGAAGACTTTAGAGAAGCTGCTGAAGCCGTGGGGGG
AAGGAGTGGAGGAGGCAGGGGAGGATTGAGGTATGTAATGCAGAACGAGG
AGGAGGAGGAGTGGTGGTAGTAGTAGCAGCAGTCACAACAGCAGCGGCTG
GAGCGGCAGATGGATGGAAATAAATGTCAGTGTTCACAAAAAGGAAAGGG
AATAAATGACAAAGGGAAAAGTAAGAGAGGTACAGAGATACTATAAGTCA
AAGATAAATACGCAGAGATTAACCGACTGAAGAT back to topCoding sequence (CDS) from alignment at scaffold_4:1322124..1323457- >mRNA_2298 ID=mRNA_2298|Name=jgi.p|Nanoce1779_2|579807|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_4:1322124..1323457- (Nannochloropsis oceanica)
ATGCTCGCCTCGGTTGCCGTCATATACGGTACCAATTTTGGAGCCATCAA
ATACCTGGATGAAGCCAACGTGGACGTCTCCATTGTCACGGCAATCCGTT
TTGCCCTGGCCTCGCTGGCCCTGTGCCCTTTCCTCTACAAAGCTCCTTGG
CCAGTGGTGTTGCGTGGGATTGAGGTAGGGGTGTGGGTATCCGTAGGCTA
CATTGCCCAGGCCATTGGTCTTCAAACCACGCAAGCCTCCAAGTCGGCCT
TCATCTGCTCCCTCGCCGTCGTAGTCGTCCCCATTGTCAATGCCATTATT
TACAAGAAGAAAGCCCCTCCCACCACCTGGCTGGCCTCCCTCCTCGCCGT
GGCTGGCGTCGGCCTCCTCACCCTCGAAGGGAAGGGCAACCCCCCCTGCA
TTGGCGACCTATGGTCCCTAGGACAGCCTATAGGCTTCGGAATCGCCTTT
GTTCGCACAGAACAATGCATGCAAGCCAATAAGGGCGAGGCCCTGGCCAT
GACAGCTTCGCAGATGGCGGCAGTCTTGGCATGCTCCATGCTTTGGGTCT
CCTTCACCCTCACGTCCAACACACCCGACCTAAGCGTCCTGTACGAGCCA
GTAAATCTCGCGGCCTTGTTCTACACGGGTGTCATCACCAGTGGCGTCGC
CGTCGTGGCGGAGAGCGTCGCCCTGGCCCATATTTCCGCCGAGGAGACTA
CCGTGATCCTGTCGACGGAGCCGCTGTGGGCTGCCCTGTTCGGGTCAGTG
ATATTGGGGGAGACAATGAGTGGATTTGGCTATTTGGGAGGGGCTGTGAT
ATTGCTCGGGTGCTTGGTGACTCAGTTGAAGCTGCCGAAGACTTTAGAGA
AGCTGCTGAAGCCGTGGGGGGAAGGAGTGGAGGAGGCAGGGGAGGATTGA back to top
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