jgi.p|Nanoce1779_2|299818, mRNA_2297 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|299818
Unique Name	mRNA_2297
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1306
Alignment location	scaffold_4:1320790..1322095 +

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Properties


Property Name	Value
TranscriptId	299904
Track	FilteredModels2
ProteinId	299818

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1320790..1322095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|299818	gene_2297	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|299818	mRNA_2297-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2297	CDS_2297	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1320790..1322095+
coding sequence from alignment at scaffold_4:1320790..1322095+

mRNA sequence

>mRNA_2297 ID=mRNA_2297|Name=jgi.p|Nanoce1779_2|299818|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp
TTGTGAATTTCTATGTGCCCAGATAGGCTCTAAAACCGGCGATCGACCTA
ATCCGCTATCTAAAATTTCATTCCCCCTCTCAACACAAAAACAAAAGCAA
CAGACATGAAGTCACCAGGACCAACGGCAGCTCAAGTTCTTGAAGGGGAA
GCAGGTGCAGGGAGGCCACCAGCCACGGAAGCCGCTTACCCAACCTCCTC
CCCTCTTCCCATCATTGACCTAACACGCCCGTCCCTCCCTGCCCTCCGCC
GTGCCTGCGAGACCTACGGCTTCTTCTATCTACAAGGCCATGACATATCT
CCTTCTCTTCTCCGGGCGGCTCTGCGTGAATGCCGAAGTTTTTTTGCCCT
TCCCCTGGCAACCAAACAAACTCTGACATACGCCGATCACAGCCAGGGCT
ACCAAGCGCTCGGCACCGAGACGCTCAATAAGAATGAGCAAAGCCAGCCT
TGCACGCAAGAAGGCTTCCGACTCAACCTCACGCCTCCTTCTTCTACTCA
ACCCTGGCCCGATGCCACCCTTCTTCCTCATTTCCGGCCGGTGTTGGAGG
AGTACCACGCAGCAATGGAAGAAGTGGCACATCGTGTGACACGCCTCCTG
CAGGCCTCTGTGGGCTTGCCGCCCTCTTACCTTCACGAGGACCAAAAAGC
ATTCTCTCCGCACGCATCGGCGGTAACCCGTTTATTGCATTATTCTCCTG
TGGTGTCACGTGTGGAGGAGGGTGTTTTTGGCTGTGGTTCACATACAGAT
TGGGGGGTACTGACGCTTTTGCTGACAGAGGAGGAGGGGTTAGAGGTGCT
ATGCCCAAGGGAGGGAGGAAGAGGAGAAAGAGAATGGTTGCGAGTTCCTC
CGTGTAGGGAAATGAAGGATGATGCCACGGAAGAAGGAGGGGAAAAAAAA
GTTAGTGAGGAAGAGGAGTGGCTTTTAATATGTAACTTGGGTGATCTCCT
TCAGCGGTGGACGAACGATTGTTTGCAGTCTACGCCTCATCGGGTGGTGA
ACCGAGACGGTAAAGAGAGGTATTCAATACCCTTTTTCTTCACGGCGAAT
CCAGCGGCAGTCGTGGAATGTCTGCCACCATTTGAGGAGGAGGAGGAGGA
GGAGGGCGGCGAGGGAAAGAGAGAGGGCGGGAGGAGGAAGGCAGGGAAAT
ATCCCCCGATCGTGGTATCAGACTATATTGCGCAGAAATATAGGAGCGTC
ACAGAGGGGCTGGAGGAGACAGAGATAGCGAACGGAGGCCAGAAGAGGGG
GGGGGAGTGATTTTGTGCGTATGGGAAGGTGAGGAAAGAAATTACAAGAA
TCCTCT

protein sequence of jgi.p|Nanoce1779_2|299818

>mRNA_2297-protein ID=mRNA_2297-protein|Name=jgi.p|Nanoce1779_2|299818|organism=Nannochloropsis oceanica|type=polypeptide|length=385bp
MKSPGPTAAQVLEGEAGAGRPPATEAAYPTSSPLPIIDLTRPSLPALRRA
CETYGFFYLQGHDISPSLLRAALRECRSFFALPLATKQTLTYADHSQGYQ
ALGTETLNKNEQSQPCTQEGFRLNLTPPSSTQPWPDATLLPHFRPVLEEY
HAAMEEVAHRVTRLLQASVGLPPSYLHEDQKAFSPHASAVTRLLHYSPVV
SRVEEGVFGCGSHTDWGVLTLLLTEEEGLEVLCPREGGRGEREWLRVPPC
REMKDDATEEGGEKKVSEEEEWLLICNLGDLLQRWTNDCLQSTPHRVVNR
DGKERYSIPFFFTANPAAVVECLPPFEEEEEEEGGEGKREGGRRKAGKYP
PIVVSDYIAQKYRSVTEGLEETEIANGGQKRGGE*

mRNA from alignment at scaffold_4:1320790..1322095+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2297 ID=mRNA_2297|Name=jgi.p|Nanoce1779_2|299818|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at scaffold_4:1320790..1322095+ (Nannochloropsis oceanica)
TTGTGAATTTCTATGTGCCCAGATAGGCTCTAAAACCGGCGATCGACCTA
ATCCGCTATCTAAAATTTCATTCCCCCTCTCAACACAAAAACAAAAGCAA
CAGACATGAAGTCACCAGGACCAACGGCAGCTCAAGTTCTTGAAGGGGAA
GCAGGTGCAGGGAGGCCACCAGCCACGGAAGCCGCTTACCCAACCTCCTC
CCCTCTTCCCATCATTGACCTAACACGCCCGTCCCTCCCTGCCCTCCGCC
GTGCCTGCGAGACCTACGGCTTCTTCTATCTACAAGGCCATGACATATCT
CCTTCTCTTCTCCGGGCGGCTCTGCGTGAATGCCGAAGTTTTTTTGCCCT
TCCCCTGGCAACCAAACAAACTCTGACATACGCCGATCACAGCCAGGGCT
ACCAAGCGCTCGGCACCGAGACGCTCAATAAGAATGAGCAAAGCCAGCCT
TGCACGCAAGAAGGCTTCCGACTCAACCTCACGCCTCCTTCTTCTACTCA
ACCCTGGCCCGATGCCACCCTTCTTCCTCATTTCCGGCCGGTGTTGGAGG
AGTACCACGCAGCAATGGAAGAAGTGGCACATCGTGTGACACGCCTCCTG
CAGGCCTCTGTGGGCTTGCCGCCCTCTTACCTTCACGAGGACCAAAAAGC
ATTCTCTCCGCACGCATCGGCGGTAACCCGTTTATTGCATTATTCTCCTG
TGGTGTCACGTGTGGAGGAGGGTGTTTTTGGCTGTGGTTCACATACAGAT
TGGGGGGTACTGACGCTTTTGCTGACAGAGGAGGAGGGGTTAGAGGTGCT
ATGCCCAAGGGAGGGAGGAAGAGGAGAAAGAGAATGGTTGCGAGTTCCTC
CGTGTAGGGAAATGAAGGATGATGCCACGGAAGAAGGAGGGGAAAAAAAA
GTTAGTGAGGAAGAGGAGTGGCTTTTAATATGTAACTTGGGTGATCTCCT
TCAGCGGTGGACGAACGATTGTTTGCAGTCTACGCCTCATCGGGTGGTGA
ACCGAGACGGTAAAGAGAGGTATTCAATACCCTTTTTCTTCACGGCGAAT
CCAGCGGCAGTCGTGGAATGTCTGCCACCATTTGAGGAGGAGGAGGAGGA
GGAGGGCGGCGAGGGAAAGAGAGAGGGCGGGAGGAGGAAGGCAGGGAAAT
ATCCCCCGATCGTGGTATCAGACTATATTGCGCAGAAATATAGGAGCGTC
ACAGAGGGGCTGGAGGAGACAGAGATAGCGAACGGAGGCCAGAAGAGGGG
GGGGGAGTGATTTTGTGCGTATGGGAAGGTGAGGAAAGAAATTACAAGAA
TCCTCT

Coding sequence (CDS) from alignment at scaffold_4:1320790..1322095+

>mRNA_2297 ID=mRNA_2297|Name=jgi.p|Nanoce1779_2|299818|organism=Nannochloropsis oceanica|type=CDS|length=1155bp|location=Sequence derived from alignment at scaffold_4:1320790..1322095+ (Nannochloropsis oceanica)
ATGAAGTCACCAGGACCAACGGCAGCTCAAGTTCTTGAAGGGGAAGCAGG
TGCAGGGAGGCCACCAGCCACGGAAGCCGCTTACCCAACCTCCTCCCCTC
TTCCCATCATTGACCTAACACGCCCGTCCCTCCCTGCCCTCCGCCGTGCC
TGCGAGACCTACGGCTTCTTCTATCTACAAGGCCATGACATATCTCCTTC
TCTTCTCCGGGCGGCTCTGCGTGAATGCCGAAGTTTTTTTGCCCTTCCCC
TGGCAACCAAACAAACTCTGACATACGCCGATCACAGCCAGGGCTACCAA
GCGCTCGGCACCGAGACGCTCAATAAGAATGAGCAAAGCCAGCCTTGCAC
GCAAGAAGGCTTCCGACTCAACCTCACGCCTCCTTCTTCTACTCAACCCT
GGCCCGATGCCACCCTTCTTCCTCATTTCCGGCCGGTGTTGGAGGAGTAC
CACGCAGCAATGGAAGAAGTGGCACATCGTGTGACACGCCTCCTGCAGGC
CTCTGTGGGCTTGCCGCCCTCTTACCTTCACGAGGACCAAAAAGCATTCT
CTCCGCACGCATCGGCGGTAACCCGTTTATTGCATTATTCTCCTGTGGTG
TCACGTGTGGAGGAGGGTGTTTTTGGCTGTGGTTCACATACAGATTGGGG
GGTACTGACGCTTTTGCTGACAGAGGAGGAGGGGTTAGAGGTGCTATGCC
CAAGGGAGGGAGGAAGAGGAGAAAGAGAATGGTTGCGAGTTCCTCCGTGT
AGGGAAATGAAGGATGATGCCACGGAAGAAGGAGGGGAAAAAAAAGTTAG
TGAGGAAGAGGAGTGGCTTTTAATATGTAACTTGGGTGATCTCCTTCAGC
GGTGGACGAACGATTGTTTGCAGTCTACGCCTCATCGGGTGGTGAACCGA
GACGGTAAAGAGAGGTATTCAATACCCTTTTTCTTCACGGCGAATCCAGC
GGCAGTCGTGGAATGTCTGCCACCATTTGAGGAGGAGGAGGAGGAGGAGG
GCGGCGAGGGAAAGAGAGAGGGCGGGAGGAGGAAGGCAGGGAAATATCCC
CCGATCGTGGTATCAGACTATATTGCGCAGAAATATAGGAGCGTCACAGA
GGGGCTGGAGGAGACAGAGATAGCGAACGGAGGCCAGAAGAGGGGGGGGG
AGTGA

Synonyms

Publications