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Properties
| Property Name | Value |
|---|
| TranscriptId | 579886 |
| Track | FilteredModels2 |
| ProteinId | 579800 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1316421..1318795 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2296 ID=mRNA_2296|Name=jgi.p|Nanoce1779_2|579800|organism=Nannochloropsis oceanica|type=mRNA|length=1439bp
ACAGCAGCACCACCATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTT
CGCCGCTCCATCGCGGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGC
CTCGACGATGACCCGTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCG
CCAAGATTGGCAAGCCTGCGCCCGATTTCACTGCGGGCGCCGTTATCGAC
GGTGAAATCACGAAGCTCTCGCTGTCGGACTACCGTGGGAAATATGTCGC
ATTGCTTTTTTATCCCAAGGACCACACTTTTGTCTGCCCCACCGAGATTA
TCGCCTACTCAGATGCCTACCAGCGCTTCGAAGAGGTCGGCACGAAGGTT
ATTGGCATCTCGACAGATACGGAGGAGTCTCACTTGTCCTGGATCCGCAC
TCCCCGGAAGAAGGGAGGGCTGGGGCACATGCAGATTCCTCTTGTTGCGG
ATGTGACGAAAACCATCGCCGCTGATTACGGTGTGTTGCTGGAGGACATC
GGCATTGCCCTGCGAGGGACATTTTTGATTGACCCAGAGGGAGTGCTGCA
GCAGATTACAATGAACAATTTACCTGTAGGCCGGAACGTGGACGAGACAA
TTCGCTTGATCCAGGCGTTCCAGTTTGTGGCGAAACATGGCGAGGTCTGT
CCAGCAGGCTGGAAGCCCGGTGACAAGACAATGAAGGCTGATCCGGAAGG
CTCACTGGAGTACTTCGCGTCAGGCGCGACAGAAGGGATCGAGGCCGATC
CGTTGGCAGGCGGGCCGCACGTGGTTACGGCCAAGAGCGGGAAGCACCTG
AAGGAGCTGCTGGCGAAGAAAGGCAAGGTGGTGCTGGACTTCGTGGCGGG
GTGGTGCGGGAAATGCAAGCAGATCATGCCCTTTGTGAATGAGCTGAGCG
AAATGCATGCGGGTGAGGTGACTTTTGTCAAGGTGGACACGACGGAGGAG
GCGCTTGCCGAAGTAGTGGCGGAGCACGGGGTCTCCGTGCTGCCCGCCTT
CCATTTCTTCAAGGACGGGAAGCCGTTTGGAGCCCCAATTGTGGGGTATA
AGAAGACGCCGCTCAAGGATTCAGTGGCGGCGTTGGCCAAGAAGTAAGTA
GGAGGGTCATGGGAAGAAGGGAGAGAGAGAGAGAGAGGGGCGATACCCAA
GGAAGGGGATGACAAGACGATTCACATCCAACACACAAGAGGTATAAACA
TGGGTGATGAAGCAGAGAAAGCAGGAAAAGATTATAAGAGGGACGAAAGG
TGGAGTGTATGTTGGACAATCAATCGGGTCAGAAAATTTTATTGAGGTCC
GAAGCTTAAGGAAGGAAATTACGGAGAGGAAAGCCAGTGAGAGAGGTATG
GACAGAGGACGGCTATGGGGTGGGGCTCTATGAAAGGTGATGATGAAAAT
AGAAAAATAAAAATAAAAAAAGTGGTATGCGGGTACGAA back to topprotein sequence of jgi.p|Nanoce1779_2|579800 >mRNA_2296-protein ID=mRNA_2296-protein|Name=jgi.p|Nanoce1779_2|579800|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MMLQSLARGTMLRRSIAAISATRSAALAASTMTRAMGSVTYSPPAAKIGK
PAPDFTAGAVIDGEITKLSLSDYRGKYVALLFYPKDHTFVCPTEIIAYSD
AYQRFEEVGTKVIGISTDTEESHLSWIRTPRKKGGLGHMQIPLVADVTKT
IAADYGVLLEDIGIALRGTFLIDPEGVLQQITMNNLPVGRNVDETIRLIQ
AFQFVAKHGEVCPAGWKPGDKTMKADPEGSLEYFASGATEGIEADPLAGG
PHVVTAKSGKHLKELLAKKGKVVLDFVAGWCGKCKQIMPFVNELSEMHAG
EVTFVKVDTTEEALAEVVAEHGVSVLPAFHFFKDGKPFGAPIVGYKKTPL
KDSVAALAKK* back to topmRNA from alignment at scaffold_4:1316421..1318795- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2296 ID=mRNA_2296|Name=jgi.p|Nanoce1779_2|579800|organism=Nannochloropsis oceanica|type=mRNA|length=2375bp|location=Sequence derived from alignment at scaffold_4:1316421..1318795- (Nannochloropsis oceanica)
ACAGCAGCACCACCATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTT
CGCCGCTCCATCGCGGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGC
CTCGACGATGACCCGTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCG
CCAAGATTGGCAAGCCTGCGCCCGATTTCACTGCGGTATGTGCGACAGTG
ATCGCGGCGTATACCATAGCTTGTTTTGAAACTCTTTGCAAGCTTGCGGC
TTGAACTGAAACAGTGGAGGCATCCGGCAATTTTTTATCTTCATCCTTTC
GGCTACATAGCCCTAACGGTGCTTTATTGTGTAAACGATTCCATTGCTTT
CTTCCCTCAATTATTTAACGATTTGCCAAATGCCCCCTTTCTTTCCCCAA
TTTCTCTAGGGCGCCGTTATCGACGGTGAAATCACGAAGCTCTCGCTGTC
GGACTACCGTGGGAAATATGTCGCATTGCTTTTTTATCCCAAGGACCACA
CTTTTGTCTGCCCGTAAGTAACAACAATAGCGGCAGAGAGCACGGGTAAG
GGTCGTTTCTCTGATGGTACAGCTCAAAATCTATAATTTCGATCGAATCG
AAGTGAAATTACGCACAAAAGAGACAGCGAATTCCAGTCCTCGTCCGTTA
CGCGGAACCATGCATTGACAATCTCTGGTTCCAGAATAAGTCGTATCGAA
TGCCATACTGCCATATCAGCGTTTTTTTAGTTCAAGTCGCGAATGATGAT
GATTTCCTGTATCTACCGTATCACACATGTTCCACTGCATGTCGAGCATA
CCCTGCCCGTTGCAAAGCGGCCTACAAAACGATGTGTGGGAACCGTGTTA
AAGATGATCGGTGTCTGTCTCTCTTTATCCCTAAACCTTTCCCAATCGCC
CCTCCCCTCCTCCCCCAAGCACCGAGATTATCGCCTACTCAGATGCCTAC
CAGCGCTTCGAAGAGGTCGGCACGAAGGTTATTGGCATCTCGACAGATAC
GGAGGAGTCTCACTTGTCCTGGATCCGCACTCCCCGGAAGAAGGGAGGGC
TGGGGCACATGCAGATTCCTCTTGTTGCGGATGTGACGAAAACCATCGCC
GCTGATTACGGTGTGTTGCTGGAGGACATCGGCATTGCCCTGCGAGGGAC
ATTTTTGATTGACCCAGAGGGAGTGCTGCAGCAGATTACAATGAACAATT
TACCTGTAGGCCGGAACGTGGACGAGACAATTCGCTTGATCCAGGCGTTC
CAGTTTGTGGCGAAACATGGCGAGGTACGAAGGGGGGGAGGGAGGAAGGG
AGGGAAGGAGGGAGGGAGGGAGGTTGAGAGGGAGTGAGGAGTACAGGAGG
GGGGCAGGGAGGGAGGGGGGGGAGGGAGAGAGGGGAAGGAGGGAAGGAGG
GAACGAGTAGTCCAGGAGGGGATGAGGAACAGTTTAAGGGCGAGTTTGAT
CATTCTGGATGAGAATAAACCGTGGGTCGGCATCCTTTCTTAGACCACCA
GCTTTCAGGAGGTCTCCACCCTCATCCCTCCTCTCCTCCCTTCCTCCCTG
CTTCGAAACACTCCCCCTTTACTTCCCCAGGTCTGTCCAGCAGGCTGGAA
GCCCGGTGACAAGACAATGAAGGCTGATCCGGAAGGCTCACTGGAGTACT
TCGCGTCAGGCGCGACAGAAGGGATCGAGGCCGATCCGTTGGCAGGCGGG
CCGCACGTGGTTACGGCCAAGAGCGGGAAGCACCTGAAGGAGCTGCTGGC
GAAGAAAGGCAAGGTGGTGCTGGACTTCGTGGCGGGGTGGTGCGGGAAAT
GCAAGCAGATCATGCCCTTTGTGAATGAGCTGAGCGAAATGCATGCGGGT
GAGGTGACTTTTGTCAAGGTGGACACGACGGAGGAGGCGCTTGCCGAAGT
AGTGGCGGAGCACGGGGTCTCCGTGCTGCCCGCCTTCCATTTCTTCAAGG
ACGGGAAGCCGTTTGGAGCCCCAATTGTGGGGTATAAGAAGACGCCGCTC
AAGGATTCAGTGGCGGCGTTGGCCAAGAAGTAAGTAGGAGGGTCATGGGA
AGAAGGGAGAGAGAGAGAGAGAGGGGCGATACCCAAGGAAGGGGATGACA
AGACGATTCACATCCAACACACAAGAGGTATAAACATGGGTGATGAAGCA
GAGAAAGCAGGAAAAGATTATAAGAGGGACGAAAGGTGGAGTGTATGTTG
GACAATCAATCGGGTCAGAAAATTTTATTGAGGTCCGAAGCTTAAGGAAG
GAAATTACGGAGAGGAAAGCCAGTGAGAGAGGTATGGACAGAGGACGGCT
ATGGGGTGGGGCTCTATGAAAGGTGATGATGAAAATAGAAAAATAAAAAT
AAAAAAAGTGGTATGCGGGTACGAA back to topCoding sequence (CDS) from alignment at scaffold_4:1316421..1318795- >mRNA_2296 ID=mRNA_2296|Name=jgi.p|Nanoce1779_2|579800|organism=Nannochloropsis oceanica|type=CDS|length=4332bp|location=Sequence derived from alignment at scaffold_4:1316421..1318795- (Nannochloropsis oceanica)
GTCTGTCCAGCAGGCTGGAAGCCCGGTGACAAGACAATGAAGGCTGATCC
GGAAGGCTCACTGGAGTACTTCGCGTCAGGCGCGACAGAAGGGATCGAGG
CCGATCCGTTGGCAGGCGGGCCGCACGTGGTTACGGCCAAGAGCGGGAAG
CACCTGAAGGAGCTGCTGGCGAAGAAAGGCAAGGTGGTGCTGGACTTCGT
GGCGGGGTGGTGCGGGAAATGCAAGCAGATCATGCCCTTTGTGAATGAGC
TGAGCGAAATGCATGCGGGTGAGGTGACTTTTGTCAAGGTGGACACGACG
GAGGAGGCGCTTGCCGAAGTAGTGGCGGAGCACGGGGTCTCCGTGCTGCC
CGCCTTCCATTTCTTCAAGGACGGGAAGCCGTTTGGAGCCCCAATTGTGG
GGTATAAGAAGACGCCGCTCAAGGATTCAGTGGCGGCGTTGGCCAAGAAG
TAACACCGAGATTATCGCCTACTCAGATGCCTACCAGCGCTTCGAAGAGG
TCGGCACGAAGGTTATTGGCATCTCGACAGATACGGAGGAGTCTCACTTG
TCCTGGATCCGCACTCCCCGGAAGAAGGGAGGGCTGGGGCACATGCAGAT
TCCTCTTGTTGCGGATGTGACGAAAACCATCGCCGCTGATTACGGTGTGT
TGCTGGAGGACATCGGCATTGCCCTGCGAGGGACATTTTTGATTGACCCA
GAGGGAGTGCTGCAGCAGATTACAATGAACAATTTACCTGTAGGCCGGAA
CGTGGACGAGACAATTCGCTTGATCCAGGCGTTCCAGTTTGTGGCGAAAC
ATGGCGAGGGCGCCGTTATCGACGGTGAAATCACGAAGCTCTCGCTGTCG
GACTACCGTGGGAAATATGTCGCATTGCTTTTTTATCCCAAGGACCACAC
TTTTGTCTGCCCATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTTCG
CCGCTCCATCGCGGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGCCT
CGACGATGACCCGTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCGCC
AAGATTGGCAAGCCTGCGCCCGATTTCACTGCGGTCTGTCCAGCAGGCTG
GAAGCCCGGTGACAAGACAATGAAGGCTGATCCGGAAGGCTCACTGGAGT
ACTTCGCGTCAGGCGCGACAGAAGGGATCGAGGCCGATCCGTTGGCAGGC
GGGCCGCACGTGGTTACGGCCAAGAGCGGGAAGCACCTGAAGGAGCTGCT
GGCGAAGAAAGGCAAGGTGGTGCTGGACTTCGTGGCGGGGTGGTGCGGGA
AATGCAAGCAGATCATGCCCTTTGTGAATGAGCTGAGCGAAATGCATGCG
GGTGAGGTGACTTTTGTCAAGGTGGACACGACGGAGGAGGCGCTTGCCGA
AGTAGTGGCGGAGCACGGGGTCTCCGTGCTGCCCGCCTTCCATTTCTTCA
AGGACGGGAAGCCGTTTGGAGCCCCAATTGTGGGGTATAAGAAGACGCCG
CTCAAGGATTCAGTGGCGGCGTTGGCCAAGAAGTAACACCGAGATTATCG
CCTACTCAGATGCCTACCAGCGCTTCGAAGAGGTCGGCACGAAGGTTATT
GGCATCTCGACAGATACGGAGGAGTCTCACTTGTCCTGGATCCGCACTCC
CCGGAAGAAGGGAGGGCTGGGGCACATGCAGATTCCTCTTGTTGCGGATG
TGACGAAAACCATCGCCGCTGATTACGGTGTGTTGCTGGAGGACATCGGC
ATTGCCCTGCGAGGGACATTTTTGATTGACCCAGAGGGAGTGCTGCAGCA
GATTACAATGAACAATTTACCTGTAGGCCGGAACGTGGACGAGACAATTC
GCTTGATCCAGGCGTTCCAGTTTGTGGCGAAACATGGCGAGGGCGCCGTT
ATCGACGGTGAAATCACGAAGCTCTCGCTGTCGGACTACCGTGGGAAATA
TGTCGCATTGCTTTTTTATCCCAAGGACCACACTTTTGTCTGCCCATGAT
GCTTCAGAGCCTTGCCCGCGGCACTATGCTTCGCCGCTCCATCGCGGCCA
TATCGGCAACCCGTTCCGCTGCCTTGGCTGCCTCGACGATGACCCGTGCC
ATGGGCTCAGTCACTTACTCGCCCCCTGCCGCCAAGATTGGCAAGCCTGC
GCCCGATTTCACTGCGGTCTGTCCAGCAGGCTGGAAGCCCGGTGACAAGA
CAATGAAGGCTGATCCGGAAGGCTCACTGGAGTACTTCGCGTCAGGCGCG
ACAGAAGGGATCGAGGCCGATCCGTTGGCAGGCGGGCCGCACGTGGTTAC
GGCCAAGAGCGGGAAGCACCTGAAGGAGCTGCTGGCGAAGAAAGGCAAGG
TGGTGCTGGACTTCGTGGCGGGGTGGTGCGGGAAATGCAAGCAGATCATG
CCCTTTGTGAATGAGCTGAGCGAAATGCATGCGGGTGAGGTGACTTTTGT
CAAGGTGGACACGACGGAGGAGGCGCTTGCCGAAGTAGTGGCGGAGCACG
GGGTCTCCGTGCTGCCCGCCTTCCATTTCTTCAAGGACGGGAAGCCGTTT
GGAGCCCCAATTGTGGGGTATAAGAAGACGCCGCTCAAGGATTCAGTGGC
GGCGTTGGCCAAGAAGTAACACCGAGATTATCGCCTACTCAGATGCCTAC
CAGCGCTTCGAAGAGGTCGGCACGAAGGTTATTGGCATCTCGACAGATAC
GGAGGAGTCTCACTTGTCCTGGATCCGCACTCCCCGGAAGAAGGGAGGGC
TGGGGCACATGCAGATTCCTCTTGTTGCGGATGTGACGAAAACCATCGCC
GCTGATTACGGTGTGTTGCTGGAGGACATCGGCATTGCCCTGCGAGGGAC
ATTTTTGATTGACCCAGAGGGAGTGCTGCAGCAGATTACAATGAACAATT
TACCTGTAGGCCGGAACGTGGACGAGACAATTCGCTTGATCCAGGCGTTC
CAGTTTGTGGCGAAACATGGCGAGGGCGCCGTTATCGACGGTGAAATCAC
GAAGCTCTCGCTGTCGGACTACCGTGGGAAATATGTCGCATTGCTTTTTT
ATCCCAAGGACCACACTTTTGTCTGCCCATGATGCTTCAGAGCCTTGCCC
GCGGCACTATGCTTCGCCGCTCCATCGCGGCCATATCGGCAACCCGTTCC
GCTGCCTTGGCTGCCTCGACGATGACCCGTGCCATGGGCTCAGTCACTTA
CTCGCCCCCTGCCGCCAAGATTGGCAAGCCTGCGCCCGATTTCACTGCGG
TCTGTCCAGCAGGCTGGAAGCCCGGTGACAAGACAATGAAGGCTGATCCG
GAAGGCTCACTGGAGTACTTCGCGTCAGGCGCGACAGAAGGGATCGAGGC
CGATCCGTTGGCAGGCGGGCCGCACGTGGTTACGGCCAAGAGCGGGAAGC
ACCTGAAGGAGCTGCTGGCGAAGAAAGGCAAGGTGGTGCTGGACTTCGTG
GCGGGGTGGTGCGGGAAATGCAAGCAGATCATGCCCTTTGTGAATGAGCT
GAGCGAAATGCATGCGGGTGAGGTGACTTTTGTCAAGGTGGACACGACGG
AGGAGGCGCTTGCCGAAGTAGTGGCGGAGCACGGGGTCTCCGTGCTGCCC
GCCTTCCATTTCTTCAAGGACGGGAAGCCGTTTGGAGCCCCAATTGTGGG
GTATAAGAAGACGCCGCTCAAGGATTCAGTGGCGGCGTTGGCCAAGAAGT
AACACCGAGATTATCGCCTACTCAGATGCCTACCAGCGCTTCGAAGAGGT
CGGCACGAAGGTTATTGGCATCTCGACAGATACGGAGGAGTCTCACTTGT
CCTGGATCCGCACTCCCCGGAAGAAGGGAGGGCTGGGGCACATGCAGATT
CCTCTTGTTGCGGATGTGACGAAAACCATCGCCGCTGATTACGGTGTGTT
GCTGGAGGACATCGGCATTGCCCTGCGAGGGACATTTTTGATTGACCCAG
AGGGAGTGCTGCAGCAGATTACAATGAACAATTTACCTGTAGGCCGGAAC
GTGGACGAGACAATTCGCTTGATCCAGGCGTTCCAGTTTGTGGCGAAACA
TGGCGAGGGCGCCGTTATCGACGGTGAAATCACGAAGCTCTCGCTGTCGG
ACTACCGTGGGAAATATGTCGCATTGCTTTTTTATCCCAAGGACCACACT
TTTGTCTGCCCATGATGCTTCAGAGCCTTGCCCGCGGCACTATGCTTCGC
CGCTCCATCGCGGCCATATCGGCAACCCGTTCCGCTGCCTTGGCTGCCTC
GACGATGACCCGTGCCATGGGCTCAGTCACTTACTCGCCCCCTGCCGCCA
AGATTGGCAAGCCTGCGCCCGATTTCACTGCG back to top
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