jgi.p|Nanoce1779_2|668944, mRNA_2295 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|668944
Unique Name	mRNA_2295
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2847
Alignment location	scaffold_4:1313231..1316391 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669030
Track	FilteredModels2
ProteinId	668944

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:1313231..1316391 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668944	gene_2295	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|668944	mRNA_2295-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2295	CDS_2295	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:1313231..1316391+
coding sequence from alignment at scaffold_4:1313231..1316391+

mRNA sequence

>mRNA_2295 ID=mRNA_2295|Name=jgi.p|Nanoce1779_2|668944|organism=Nannochloropsis oceanica|type=mRNA|length=2847bp
GGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCCGACCCATTTCGTTG
CTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTGCAGGCGTCGTTCAA
ACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCGCATCTGAGTGGGCG
GTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGGGAGGGAAATGGGGG
AAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGAGGCGGAGGAAGAGA
AGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAGTGCTGCTGCTATTG
CTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTGCTATTTCCCTTGCC
CTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAACGATGACGAAAATG
ATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTACTTCCCCTCCTCCT
TCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAAAAGAATGAAGAGGA
AGGCGACCTACTGGAGCCGGTGCTGCAATTTAATACTACCGGTCTCGCTC
CCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATACCCCCATTCGGTCT
GTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCCTCCCTCCCTTCCTC
CTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGGGGATTGCAGGATGG
CTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGATATCTTTCAGGGTCC
TTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGGGGAGAAGGGGAAGA
GGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGAGCTTGAGGGAAGGG
AAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTATCGTCGTCTTCTGAG
CAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCCGGTGACCCGAGGCC
GCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGGAGGGGAGGAGGAGG
AACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGCTCGGGGGCCGACAG
GTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTTTAATTGATGGTGTC
TCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTATAGTGCTGCGTGGAA
TGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGGAAAGAAGCTTTCGC
TGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAGACGATGAGGCGAGC
TCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTACGATGGAGGACAAG
AAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTGTGAGTTGTCGTTTG
TTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTGGTCGTGCATGCTTC
TTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTGACGAAATGCAACGA
GGAAAAGGAGACACGTTCCTTGTCATGATACATCGCCTTACCCGAGTGCG
AAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCCTTCGCATAAACATT
CAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAGAACATGGCCCGATC
AAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCGGAGGAGTGGCAGCC
GCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCTTTGGGGCAGTGGCC
CTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGCGAGCCTCACTATGC
AGACAACCTTACTACCGCTGCTAATGACACCGCTGAGGATACGTTTCCCG
CCACATTCGACGAAACGAAGCTCGGCGCCGACCTCCTGCCCATCAATACC
AGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCCGTACTGTCTCGCCT
GAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGACGTGGCGTGTGACT
GGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGTCCTGTAAATTTAAG
CCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGCCGCCTCAGGACAAA
GGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAGGGAGCGAAGAGCAC
TTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGGAGGGGGTAAGGTGT
GTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGGGTGCACCACACGGT
GAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGCCAAACTGCCAGACA
CAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCGTGGCGCAGCGCAAG
ATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAGTTCAAAGCGGGCGA
CATGATGATGGACCGGGCGTGCCGTTTAAAATAAGACCAAACTGTGGAGA
TGCATGGGGATGGGGAGGAGGTAGGAGAGCAGCGGGAGACAGAGGAAGGA
CACTGAAAGAGGTGTAGGAGTAAAGGGTCACACCGAGAGGGGAACACTGA
AAGGGAGAAGAGCCTCGAGAATCGTGTTTGTATGTACATAGAATGTAAAC
AACACAAAGTGCAAAGGAAAAAAAGCAAATCTTTTTAGAGACAGCGGCAT
GAGGCATAATAATTGGTGATGAGCGCGAGGTAGAGAAGACCCTCTTTCCC
CCCCGCCGCGATCGATCAGTGGAAGAGGAGAAATTTAATCTCGATGGGCA
CGTGCACGCTGTCGGTCGCACGCCAGCAACGAATAAGACGTTTTCAAGTT
TTGGAACAAATCTGCAGAGACTACGCGACAGGTATACATAAACCGACAAA
CAAACAGTCTCTCGACAAACAAGAAAGAAACCCATGCAAGGCTTGTG

protein sequence of jgi.p|Nanoce1779_2|668944

>mRNA_2295-protein ID=mRNA_2295-protein|Name=jgi.p|Nanoce1779_2|668944|organism=Nannochloropsis oceanica|type=polypeptide|length=265bp
MARSSRRSSRSSNRSRRSGSRSSSSKRNRALIFGAVALISALLVLTHASE
PHYADNLTTAANDTAEDTFPATFDETKLGADLLPINTSSPRKSNTSIAAV
LSRLKSTFGRLLPSSDVACDWSWVQLKCAPSESCKFKPRLGDLHLGRSCR
LRTKETEKEGEKEGRRERRALKLVKAAWAGVVEGVRCVWLKVDRVRDRGV
HHTVRGFKAAVGNLKAKLPDTDKECKFDVIKSVAQRKMVCEPAESCVFQF
KAGDMMMDRACRLK*

mRNA from alignment at scaffold_4:1313231..1316391+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2295 ID=mRNA_2295|Name=jgi.p|Nanoce1779_2|668944|organism=Nannochloropsis oceanica|type=mRNA|length=3161bp|location=Sequence derived from alignment at scaffold_4:1313231..1316391+ (Nannochloropsis oceanica)
GGGAACGAGGTAGAGGAAGATGAAGGTGGTAAGCCCGACCCATTTCGTTG
CTTCCTTTGCTGCTGCTGCTGCTGCACTTCCAACTGCAGGCGTCGTTCAA
ACGCAGCGATTTCGGCTTCAAGGGATGAATCGATCGCATCTGAGTGGGCG
GTATTCATGCTGCTGCTGCCGCTGTGGTGCTTGCGGGAGGGAAATGGGGG
AAGAGAGGAAGAAGGGGAGGAGGCAAGAATGGCGGAGGCGGAGGAAGAGA
AGATGCGCGCTTGCTTCTTCCGTCCCTTATCATTAGTGCTGCTGCTATTG
CTGCTGCTGCTGCCGCATCTGCTCGTCGTGCTGCTGCTATTTCCCTTGCC
CTTGCCTTGTTTTACTGCAGCCAGTGCCTTTGAAAACGATGACGAAAATG
ATTTGCGAGGTCCCTCGCCGGTGATAGTCCTTTTTACTTCCCCTCCTCCT
TCCCCTCCTCCCAACCCTTCTTGAAGGGAACGAAAAAAGAATGAAGAGGA
AGGCGACCTACTGGAGCCGGTGCTGCAATTTAATACTACCGGTCTCGCTC
CCCTCTCCCCAATCGCCGAAGCTGACATTGAAAATACCCCCATTCGGTCT
GTCGAGGACATCCTTAGCCCTCTCGCCTTCCCTTCCTCCCTCCCTTCCTC
CTCCTCCCTCCTCCTTCGAAGCAGGACGTTGTGCGGGGATTGCAGGATGG
CTTTTCTTCGGGCTTGCTCCTTCAGGGAAAGACGATATCTTTCAGGGTCC
TTCTGACTCGAGTCCCAAGCAGGACGCGCATGGAGGGGAGAAGGGGAAGA
GGATGTAACTGGCTTGTCTCTTTTTTTCACGTATGAGCTTGAGGGAAGGG
AAGTGGAGCAGCAGGATGAAGAGACGGACTCGGTATCGTCGTCTTCTGAG
CAGGGGACTGGCTGCTTGACAGGTACGCGGGCTGCCGGTGACCCGAGGCC
GCGGACGGTGGCCAAAGGGGAGGGAACAAGGAGAGGAGGGGAGGAGGAGG
AACGTTTGGATGGGCGGTGGGTAGTACTTGTCTTGCTCGGGGGCCGACAG
GTGCTTGTGGCGAAGAGACCCATCGTTTTGATCCTTTAATTGATGGTGTC
TCGACCTGTTATCCTCCTTGGATTGCTTTTGTGTATAGTGCTGCGTGGAA
TGGCAGTGGGGAGTAGGGAGGGCGACGAATGGGCGGAAAGAAGCTTTCGC
TGACAAAACACAGCGAGCGCGCGGGGAAGAACGGAGACGATGAGGCGAGC
TCGCAGCGCGTTGCGTTCTGTTTATAGCGTAGGGTACGATGGAGGACAAG
AAGAATAAGTGAGAGTGAGAACTGCGTAGTTCTTTGTGAGTTGTCGTTTG
TTCCAAAATTCCCGCCTAAACTTGGCGTCATGCGTGGTCGTGCATGCTTC
TTCATAAGAATTGTGTGTGAAGTTTGTGCTGCCTTGACGAAATGCAACGA
GGAAAAGGAGACACGTTCCTTGTCATGATACATCGCCTTACCCGAGTGCG
AAATGTGCCGCGCTCTACTCATCCCCATTTGCTTCCTTCGCATAAACATT
CAACACAGGTAGTAAATCCTTACTTCCCTCTTTCAGAACATGGCCCGATC
AAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCGGAGGAGTGGCAGCC
GCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCTTTGGGGCAGTGGCC
CTGATCTCGGCTCTCCTTGTTTTGGTACGTGGCGCTCCCTCCCTCCTCTC
CCCTCCCCTTTCCCTCGCTCTCCGCCACTTCCATTGCCCTCTCGCCCTCG
ATGTAAACCATGCATTAGCTCTCCATTAAAGCACAATCCAATTATTGTGC
TGCGCTCTGCTCCTCTTCACTAATAGGTCGATAATTTCTTTATCCTCTCA
TCGCTAGTACCGTCAATGCCCCACGCGCATCCTCTACATATTTTCCACAC
CTATCTCTTACCATCAGCCTTCCTTACTCCTACCTACGTATGCTCACCTT
TGTCTTTTTCTTTCTCCTGTTCTCCACCCTTTCTTCAGACGCATGCCAGC
GAGCCTCACTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGA
GGATACGTTTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCC
TGCCCATCAATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCC
GTACTGTCTCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGA
CGTGGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGT
CCTGTAAATTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGC
CGCCTCAGGACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAG
GGAGCGAAGAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGG
AGGGGGTAAGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGG
GTGCACCACACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGC
CAAACTGCCAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCG
TGGCGCAGCGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAG
TTCAAAGCGGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAAGA
CCAAACTGTGGAGATGCATGGGGATGGGGAGGAGGTAGGAGAGCAGCGGG
AGACAGAGGAAGGACACTGAAAGAGGTGTAGGAGTAAAGGGTCACACCGA
GAGGGGAACACTGAAAGGGAGAAGAGCCTCGAGAATCGTGTTTGTATGTA
CATAGAATGTAAACAACACAAAGTGCAAAGGAAAAAAAGCAAATCTTTTT
AGAGACAGCGGCATGAGGCATAATAATTGGTGATGAGCGCGAGGTAGAGA
AGACCCTCTTTCCCCCCCGCCGCGATCGATCAGTGGAAGAGGAGAAATTT
AATCTCGATGGGCACGTGCACGCTGTCGGTCGCACGCCAGCAACGAATAA
GACGTTTTCAAGTTTTGGAACAAATCTGCAGAGACTACGCGACAGGTATA
CATAAACCGACAAACAAACAGTCTCTCGACAAACAAGAAAGAAACCCATG
CAAGGCTTGTG

Coding sequence (CDS) from alignment at scaffold_4:1313231..1316391+

>mRNA_2295 ID=mRNA_2295|Name=jgi.p|Nanoce1779_2|668944|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_4:1313231..1316391+ (Nannochloropsis oceanica)
ATGGCCCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCGGAG
GAGTGGCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCTTTG
GGGCAGTGGCCCTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGCGAG
CCTCACTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGAGGA
TACGTTTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCCTGC
CCATCAATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCCGTA
CTGTCTCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGACGT
GGCGTGTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGTCCT
GTAAATTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGCCGC
CTCAGGACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAGGGA
GCGAAGAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGGAGG
GGGTAAGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGGGTG
CACCACACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGCCAA
ACTGCCAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCGTGG
CGCAGCGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAGTTC
AAAGCGGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAAATGGC
CCGATCAAGTCGTCGCAGCAGTCGCAGCAGCAATCGTTCCCGGAGGAGTG
GCAGCCGCTCCAGCAGCTCTAAACGCAACCGTGCCTTAATCTTTGGGGCA
GTGGCCCTGATCTCGGCTCTCCTTGTTTTGACGCATGCCAGCGAGCCTCA
CTATGCAGACAACCTTACTACCGCTGCTAATGACACCGCTGAGGATACGT
TTCCCGCCACATTCGACGAAACGAAGCTCGGCGCCGACCTCCTGCCCATC
AATACCAGCAGCCCCAGGAAGAGCAACACCAGCATTGCCGCCGTACTGTC
TCGCCTGAAGTCAACCTTTGGCCGACTCCTCCCGTCGTCGGACGTGGCGT
GTGACTGGAGCTGGGTGCAGCTGAAGTGTGCGCCCAGCGAGTCCTGTAAA
TTTAAGCCACGCCTCGGGGACCTTCATTTGGGCCGCTCTTGCCGCCTCAG
GACAAAGGAAACAGAGAAGGAGGGCGAGAAGGAGGGAAGGAGGGAGCGAA
GAGCACTTAAATTGGTGAAAGCTGCCTGGGCGGGAGTCGTGGAGGGGGTA
AGGTGTGTGTGGTTGAAGGTAGACCGCGTGAGGGATAGGGGGGTGCACCA
CACGGTGAGGGGCTTCAAGGCGGCAGTGGGCAATCTGAAGGCCAAACTGC
CAGACACAGACAAGGAGTGCAAGTTTGATGTCATCAAAAGCGTGGCGCAG
CGCAAGATGGTATGTGAGCCGGCCGAGAGCTGTGTGTTTCAGTTCAAAGC
GGGCGACATGATGATGGACCGGGCGTGCCGTTTAAAATAA

Synonyms

Publications