jgi.p|Nanoce1779_2|579792, mRNA_2294 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579792
Unique NamemRNA_2294
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1196
Alignment locationscaffold_4:1311451..1312646 -

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Properties
Property NameValue
TranscriptId579878
TrackFilteredModels2
ProteinId579792
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1311451..1312646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579792gene_2294Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579792mRNA_2294-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2294CDS_2294Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2294 ID=mRNA_2294|Name=jgi.p|Nanoce1779_2|579792|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp
GTCCTTTTGCGTCCTCTGTAGATATGGGAAGAATGAGAGGGGGAGGGGGG
CGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGGCCTC
GATGGCTATCCCAGCTCTTGCCGGGCACCAAAAAGACTGGAAGATGAGAA
AGGCAGGGAAGGAGGAGGAGCGAGCGGTTTTGGGGTTGGAGTCGGCAACC
ATCAGAAAGGTGAGCATGGGCAAGACGGTGGGCAGCAGCGGCAGCAGCAG
CAGCAAGAGCAGCAGCAAGAGCAACAGGGCCGTTGGAAAGAAGGATGACA
GGAAAGAGAAAGGTAGAGGTAGTAGGAAGGACGGGAAGGGAGTTAATGGG
GTAGACGCCGAGGAGAGAGAAGTACAGAGGGAAATGATGAAGAGTTTCTT
CCTCCATTCAACCTCTGACGGCCACGACAACGCCTATCTTCTATCCCCTC
CTTCTGCTGCTGCAGCAGCAGCAGCGGATGGTTCTCAAGAATTTTCATAC
GACGAGGAAATAGAACTGGAGGAGGAGAAGGACGAGGGGGAGGAGGGGGA
GGGAGAGGAAAGGGAGGAGAAAGAGAACAAGCCGCGTGCCAAACCTCCTT
CCTCCTCCTCCTCCTTTTCCAAGGTTCACGCTCCAGTCACACAGCTGGGG
AAATGGGCCACGCCGGGGTCGTGGCGTCAGCTGCGACCACAAGCATTAGG
GCAACGGGAATCGAAGGGAAGGGGTAAAACGAGTGTTTGAGCGTGACTTC
CATCGCTGGGGAGAGAATGCTGCTACTGCCACAAGGAAGGTTCTGATGGA
CCTGAGGAACGGCCGAAGGATGAAGGCAGACCGCTCTCCTTTACAAGAAG
AAAGGCTTTTCCCCCCCCCCTTCGTCGATAGATTCCATGAATTCTTCGGT
CCATCTGTGATACGACTTCTTCGCCCTGCGCTTCTTATTCTTTCGATAGT
TGTTCCTCTTAATAATCTTCTCCGTCCTCATCCCCCTCTGGTCTATGCAC
ATTATCAATCAATGTATAAATACTGGGCCGGAGACACCCGAGCAACTCGC
CCAACTCAATCACGCCAGCATCTACACGCGTCACTTCTCAATATGCTTTA
CAAAATCAATCCCTCTCCCTTCCTCCCTCCCTCCCTCTTCAAGGAAGCAG
TCACTCGTTGTCGTCGTCCTCCTCCCCCTCCCCCTCCGCTCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|579792

>mRNA_2294-protein ID=mRNA_2294-protein|Name=jgi.p|Nanoce1779_2|579792|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MGRMRGGGGRQEQQQQQQQQQQRLASMAIPALAGHQKDWKMRKAGKEEER
AVLGLESATIRKVSMGKTVGSSGSSSSKSSSKSNRAVGKKDDRKEKGRGS
RKDGKGVNGVDAEEREVQREMMKSFFLHSTSDGHDNAYLLSPPSAAAAAA
ADGSQEFSYDEEIELEEEKDEGEEGEGEEREEKENKPRAKPPSSSSSFSK
VHAPVTQLGKWATPGSWRQLRPQALGQRESKGRGKTSV*
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mRNA from alignment at scaffold_4:1311451..1312646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2294 ID=mRNA_2294|Name=jgi.p|Nanoce1779_2|579792|organism=Nannochloropsis oceanica|type=mRNA|length=1196bp|location=Sequence derived from alignment at scaffold_4:1311451..1312646- (Nannochloropsis oceanica)
GTCCTTTTGCGTCCTCTGTAGATATGGGAAGAATGAGAGGGGGAGGGGGG
CGACAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGACTGGCCTC
GATGGCTATCCCAGCTCTTGCCGGGCACCAAAAAGACTGGAAGATGAGAA
AGGCAGGGAAGGAGGAGGAGCGAGCGGTTTTGGGGTTGGAGTCGGCAACC
ATCAGAAAGGTGAGCATGGGCAAGACGGTGGGCAGCAGCGGCAGCAGCAG
CAGCAAGAGCAGCAGCAAGAGCAACAGGGCCGTTGGAAAGAAGGATGACA
GGAAAGAGAAAGGTAGAGGTAGTAGGAAGGACGGGAAGGGAGTTAATGGG
GTAGACGCCGAGGAGAGAGAAGTACAGAGGGAAATGATGAAGAGTTTCTT
CCTCCATTCAACCTCTGACGGCCACGACAACGCCTATCTTCTATCCCCTC
CTTCTGCTGCTGCAGCAGCAGCAGCGGATGGTTCTCAAGAATTTTCATAC
GACGAGGAAATAGAACTGGAGGAGGAGAAGGACGAGGGGGAGGAGGGGGA
GGGAGAGGAAAGGGAGGAGAAAGAGAACAAGCCGCGTGCCAAACCTCCTT
CCTCCTCCTCCTCCTTTTCCAAGGTTCACGCTCCAGTCACACAGCTGGGG
AAATGGGCCACGCCGGGGTCGTGGCGTCAGCTGCGACCACAAGCATTAGG
GCAACGGGAATCGAAGGGAAGGGGTAAAACGAGTGTTTGAGCGTGACTTC
CATCGCTGGGGAGAGAATGCTGCTACTGCCACAAGGAAGGTTCTGATGGA
CCTGAGGAACGGCCGAAGGATGAAGGCAGACCGCTCTCCTTTACAAGAAG
AAAGGCTTTTCCCCCCCCCCTTCGTCGATAGATTCCATGAATTCTTCGGT
CCATCTGTGATACGACTTCTTCGCCCTGCGCTTCTTATTCTTTCGATAGT
TGTTCCTCTTAATAATCTTCTCCGTCCTCATCCCCCTCTGGTCTATGCAC
ATTATCAATCAATGTATAAATACTGGGCCGGAGACACCCGAGCAACTCGC
CCAACTCAATCACGCCAGCATCTACACGCGTCACTTCTCAATATGCTTTA
CAAAATCAATCCCTCTCCCTTCCTCCCTCCCTCCCTCTTCAAGGAAGCAG
TCACTCGTTGTCGTCGTCCTCCTCCCCCTCCCCCTCCGCTCCCTCC
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Coding sequence (CDS) from alignment at scaffold_4:1311451..1312646-

>mRNA_2294 ID=mRNA_2294|Name=jgi.p|Nanoce1779_2|579792|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_4:1311451..1312646- (Nannochloropsis oceanica)
ATGGGAAGAATGAGAGGGGGAGGGGGGCGACAAGAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGACTGGCCTCGATGGCTATCCCAGCTCTTGCCG
GGCACCAAAAAGACTGGAAGATGAGAAAGGCAGGGAAGGAGGAGGAGCGA
GCGGTTTTGGGGTTGGAGTCGGCAACCATCAGAAAGGTGAGCATGGGCAA
GACGGTGGGCAGCAGCGGCAGCAGCAGCAGCAAGAGCAGCAGCAAGAGCA
ACAGGGCCGTTGGAAAGAAGGATGACAGGAAAGAGAAAGGTAGAGGTAGT
AGGAAGGACGGGAAGGGAGTTAATGGGGTAGACGCCGAGGAGAGAGAAGT
ACAGAGGGAAATGATGAAGAGTTTCTTCCTCCATTCAACCTCTGACGGCC
ACGACAACGCCTATCTTCTATCCCCTCCTTCTGCTGCTGCAGCAGCAGCA
GCGGATGGTTCTCAAGAATTTTCATACGACGAGGAAATAGAACTGGAGGA
GGAGAAGGACGAGGGGGAGGAGGGGGAGGGAGAGGAAAGGGAGGAGAAAG
AGAACAAGCCGCGTGCCAAACCTCCTTCCTCCTCCTCCTCCTTTTCCAAG
GTTCACGCTCCAGTCACACAGCTGGGGAAATGGGCCACGCCGGGGTCGTG
GCGTCAGCTGCGACCACAAGCATTAGGGCAACGGGAATCGAAGGGAAGGG
GTAAAACGAGTGTTTGA
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Synonyms
Publications