jgi.p|Nanoce1779_2|579779, mRNA_2292 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579779
Unique NamemRNA_2292
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1223
Alignment locationscaffold_4:1304086..1305308 +

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Properties
Property NameValue
TranscriptId579865
TrackFilteredModels2
ProteinId579779
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1304086..1305308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579779gene_2292Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579779mRNA_2292-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2292CDS_2292Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2292 ID=mRNA_2292|Name=jgi.p|Nanoce1779_2|579779|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
CGGCTGGGTCTCTCTCTTCTCCTACATGAACTACCCTTATCTAGGAGTTC
GCACCCTAATTCTCTTTCCTTTCTTTTCCACCCTCCCTCCCTCCCTCCCA
CCTCGTGGTAGTATGCCCCTCCTCACTCCCCACCGGTACTACATCGGCGA
TGTGCTGGCGAAAGCCTGCTTCATCTTCAACAAGCCCGACCGCCTTCCTT
ACAAGAAATGTTGGAAGAGGTTTGGGAACACCGTCTCCTTCCCTCCCTCG
CTCCTTCCCTCCTTCCTTCGCGACCGAATCGATGCCTTCCTTGGGTGGTT
TCTAGACGGACTGCTCTTCCTCTCTCAGGCCTTTCCCACCTTCTCCTCCG
CCCTCCCTACTTTCGTCACCCCTTCCTTTCTCCAACTAAGCTGGGAAGGT
AAGGCCTTGTTTTTCGTGGTGGGTTTTGCGGTGTGCGCATCCGTGTCAAT
CATCTTTGCCTGCCTCTTCTCCCTTGCCCTCTTCTTCGCGCCCGTCACCG
CCTTCCTCTTCACGACCAGCCTTCTGGCTTCCGTTGGCTTGGGGGCACCC
GCTGTGATGTTGATGGGATTTCTGTTTACATTCCCTTCGGTGGACGAGAA
GGTCTTTCAACCTTCTGTTGAATGGGCAGTGACACGGCTTCCGCTGGTGG
GGAGGATACTGCTGGATGATGCGGGGGAGAGGAAGAGGGGCGCAGATAGG
TAGGGGAGATAAAAGCCCATCAACTTAGGAGTAAGGAGTAAAGTGTTTAG
AAAAAGGAGTCATAGACAATGGCGTAGACGACAAGAATTAGTTGATAGAA
AATAAAACGTAGGGAGGGAGGGAGAAGAGGGGAGACGGCAAAGAAGGGCA
TGAAATAAAGTTCCGGTATTAGTATTTTTAGGACTTTTTTTATAAACTAC
GCCAGATCATAGGACCATTCAGCAGAACAAAATAGGAGATAGTGTAAGGA
GGGAAAATTCTACGGTCGAAAACGAAAGAAAAGGGAAGGAGGGATAGGAA
CAGAGAAGAAACTATGTAAAATAATCAAAAGCCTCAGGACTCCAACAAGG
GAACCAAAGAAGCAGTAGACTGCCTCAGGCATCGACGATATATAACTTGC
CTCGTCGTAATGTGTTGGCCATGGGCTTGGGCGGGAGGCAGCTTTGGGCT
GCTTGGACAGGTGCGACAGACAGCTGGGAGACCGGCAGGGAAGCCACGTG
ACGCTTTATAGAAGTGGGCCTGT
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protein sequence of jgi.p|Nanoce1779_2|579779

>mRNA_2292-protein ID=mRNA_2292-protein|Name=jgi.p|Nanoce1779_2|579779|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MNYPYLGVRTLILFPFFSTLPPSLPPRGSMPLLTPHRYYIGDVLAKACFI
FNKPDRLPYKKCWKRFGNTVSFPPSLLPSFLRDRIDAFLGWFLDGLLFLS
QAFPTFSSALPTFVTPSFLQLSWEGKALFFVVGFAVCASVSIIFACLFSL
ALFFAPVTAFLFTTSLLASVGLGAPAVMLMGFLFTFPSVDEKVFQPSVEW
AVTRLPLVGRILLDDAGERKRGADR*
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mRNA from alignment at scaffold_4:1304086..1305308+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2292 ID=mRNA_2292|Name=jgi.p|Nanoce1779_2|579779|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp|location=Sequence derived from alignment at scaffold_4:1304086..1305308+ (Nannochloropsis oceanica)
CGGCTGGGTCTCTCTCTTCTCCTACATGAACTACCCTTATCTAGGAGTTC
GCACCCTAATTCTCTTTCCTTTCTTTTCCACCCTCCCTCCCTCCCTCCCA
CCTCGTGGTAGTATGCCCCTCCTCACTCCCCACCGGTACTACATCGGCGA
TGTGCTGGCGAAAGCCTGCTTCATCTTCAACAAGCCCGACCGCCTTCCTT
ACAAGAAATGTTGGAAGAGGTTTGGGAACACCGTCTCCTTCCCTCCCTCG
CTCCTTCCCTCCTTCCTTCGCGACCGAATCGATGCCTTCCTTGGGTGGTT
TCTAGACGGACTGCTCTTCCTCTCTCAGGCCTTTCCCACCTTCTCCTCCG
CCCTCCCTACTTTCGTCACCCCTTCCTTTCTCCAACTAAGCTGGGAAGGT
AAGGCCTTGTTTTTCGTGGTGGGTTTTGCGGTGTGCGCATCCGTGTCAAT
CATCTTTGCCTGCCTCTTCTCCCTTGCCCTCTTCTTCGCGCCCGTCACCG
CCTTCCTCTTCACGACCAGCCTTCTGGCTTCCGTTGGCTTGGGGGCACCC
GCTGTGATGTTGATGGGATTTCTGTTTACATTCCCTTCGGTGGACGAGAA
GGTCTTTCAACCTTCTGTTGAATGGGCAGTGACACGGCTTCCGCTGGTGG
GGAGGATACTGCTGGATGATGCGGGGGAGAGGAAGAGGGGCGCAGATAGG
TAGGGGAGATAAAAGCCCATCAACTTAGGAGTAAGGAGTAAAGTGTTTAG
AAAAAGGAGTCATAGACAATGGCGTAGACGACAAGAATTAGTTGATAGAA
AATAAAACGTAGGGAGGGAGGGAGAAGAGGGGAGACGGCAAAGAAGGGCA
TGAAATAAAGTTCCGGTATTAGTATTTTTAGGACTTTTTTTATAAACTAC
GCCAGATCATAGGACCATTCAGCAGAACAAAATAGGAGATAGTGTAAGGA
GGGAAAATTCTACGGTCGAAAACGAAAGAAAAGGGAAGGAGGGATAGGAA
CAGAGAAGAAACTATGTAAAATAATCAAAAGCCTCAGGACTCCAACAAGG
GAACCAAAGAAGCAGTAGACTGCCTCAGGCATCGACGATATATAACTTGC
CTCGTCGTAATGTGTTGGCCATGGGCTTGGGCGGGAGGCAGCTTTGGGCT
GCTTGGACAGGTGCGACAGACAGCTGGGAGACCGGCAGGGAAGCCACGTG
ACGCTTTATAGAAGTGGGCCTGT
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Coding sequence (CDS) from alignment at scaffold_4:1304086..1305308+

>mRNA_2292 ID=mRNA_2292|Name=jgi.p|Nanoce1779_2|579779|organism=Nannochloropsis oceanica|type=CDS|length=678bp|location=Sequence derived from alignment at scaffold_4:1304086..1305308+ (Nannochloropsis oceanica)
ATGAACTACCCTTATCTAGGAGTTCGCACCCTAATTCTCTTTCCTTTCTT
TTCCACCCTCCCTCCCTCCCTCCCACCTCGTGGTAGTATGCCCCTCCTCA
CTCCCCACCGGTACTACATCGGCGATGTGCTGGCGAAAGCCTGCTTCATC
TTCAACAAGCCCGACCGCCTTCCTTACAAGAAATGTTGGAAGAGGTTTGG
GAACACCGTCTCCTTCCCTCCCTCGCTCCTTCCCTCCTTCCTTCGCGACC
GAATCGATGCCTTCCTTGGGTGGTTTCTAGACGGACTGCTCTTCCTCTCT
CAGGCCTTTCCCACCTTCTCCTCCGCCCTCCCTACTTTCGTCACCCCTTC
CTTTCTCCAACTAAGCTGGGAAGGTAAGGCCTTGTTTTTCGTGGTGGGTT
TTGCGGTGTGCGCATCCGTGTCAATCATCTTTGCCTGCCTCTTCTCCCTT
GCCCTCTTCTTCGCGCCCGTCACCGCCTTCCTCTTCACGACCAGCCTTCT
GGCTTCCGTTGGCTTGGGGGCACCCGCTGTGATGTTGATGGGATTTCTGT
TTACATTCCCTTCGGTGGACGAGAAGGTCTTTCAACCTTCTGTTGAATGG
GCAGTGACACGGCTTCCGCTGGTGGGGAGGATACTGCTGGATGATGCGGG
GGAGAGGAAGAGGGGCGCAGATAGGTAG
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Synonyms
Publications