jgi.p|Nanoce1779_2|576603, mRNA_229 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576603
Unique Name	mRNA_229
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1760
Alignment location	scaffold_3:568538..570516 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576689
Track	FilteredModels2
ProteinId	576603

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:568538..570516 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576603	gene_229	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576603	mRNA_229-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_229	CDS_229	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:568538..570516+
coding sequence from alignment at scaffold_3:568538..570516+

mRNA sequence

>mRNA_229 ID=mRNA_229|Name=jgi.p|Nanoce1779_2|576603|organism=Nannochloropsis oceanica|type=mRNA|length=1760bp
CAGGTGTACGATTCCAGGACGGACGACGACTGATTTAATATGAAGACACC
CACGAGCTTTGCATGTGGAGCTTGCACGGCGGCCGTGTTAATGAGTTTCA
CAACAACAGCACATGCCCATGCCAGCACATCACCACCGGGCGGCGTGAGC
GTTGCAGTAGCGCGGCGGCAACCAGGCTTTCTCTCGATAGGGCGCTCATC
TTTGCGATCATCGGCCACGACAAGGAGAATAAGCGGGAGAGGGCTGGAGG
AGCTGGAAACTAAACACACACGGGGCGGCAGAATGCCGCCGCCGCCGCCG
CAGTATCGTCGGCGTAGGAGGGTACCAACTATGCTAGTGGAGACAGACGT
CAAGGTAAAAGAAGCGGGGATCGGCTTTGGGTCAGGAAGCAGCGACAGTG
ACAGCATGAGCAGCAAGAGCGGGTCTGGGGTGGCTGACGCCTCAGAAGGT
ACAGGTCCACCGCCAGTGCCCGAGGATACCTTCCGGCACAAGAGCTTGGC
GGAGGTCCCGACCGACTACGGACCCTACCTGACCATCAAGGGTTTCAAGA
TCAATGCCTTCGGCTTCTATTTCTGCTTTATGGCGCTGTTCTGGGCGATC
CCCTGGGGTGTCTTCCTCATCCTGTACAAGGCGAGCTTGGAGTTCATGGA
CAAGATCGATCCTCGCCGACACAATGTCGACCGCTCCAGTGCCCTATGGG
GCTGGCTGACCAGTATCACTACTGACTCCTTACCCGATATTACGGGCATG
GAGAACATTCCCAAGGGACCAGCGGTCTTCGTCGCCAACCACGCCTCCTG
GATGGATGTGCCCTACACTGCCCAGCTGCCCGTCCGCGCCAAGTACCTAG
CCAAGGCTGACCTGGCCAGGATCCCTATCCTGGGCAACGCCATGAGAATG
GCTCAGCACGTCCTCCTCGATCGAGACGACAAGCGCAGCCAAATGGAAGC
CCTGCGCTCTGCTCTCCTAATCCTCAAGACAGGCACCCCCATCTTCGTCT
TCCCCGAGGGCACTCGTGGGCCTCAAGGCCGCATGCAATCCTTCAAGATG
GGTGCATTCAAGGTGGCGACCAAGGCAGGCGTGCCTATAGTGCCTGTGTC
TATTGCGGGGACGCATATCATGATGCCTAAGGAGGTGATCATGCCTCAAT
GTGCTGGCCGGGGGATCACCGCCATCCATGTCCACCCTCCCATCTCCATC
AAGGGCCGCACTGACCAGGAGCTGTCGGATCTGGCGTTTGATATAATCAA
CAATGCGTTATCAGATGAGCAGCGGGCTGTCCCAAGCACGAAGAAGGACG
ATTCGGAAGCTTAAGGATGGAAAAGGAAGGAGACGTGAAGGAATGAGGTG
AAGGCATGTCAACATTAGAAGATGGAGATCATGAAGAGACCGAAGTAAGG
AAATCAAAACCCATTCAGTGAGCCATGTGTAGATCATTTGCAAGACAGGT
GAACAGCAGCAGCAGCAGTAGCCGGTCTCATCGAAAAAGACAAGCACCAA
GCAGAAGGCAATAACAGGCAATTATTGAATAGATTTGGAGCACGGGATCA
GCGCACAGCCAATAAGATGCCGTGTGCTTTGTAGCAGGGGGGGGGGTGAC
GGTAGCGTAGACCTCACGAATATTTGTGGTGGGGATAAGGAAAATTAAAT
AATTCACCGTTGGTTTGCAGACGGAGAGTGCATGAGATTTCCTAAGACCA
GACAGAGACGGGGCAGCTTGATCTGAATCAAGAGAAAGAAAGACGAACAG
ACGACAAAAT

protein sequence of jgi.p|Nanoce1779_2|576603

>mRNA_229-protein ID=mRNA_229-protein|Name=jgi.p|Nanoce1779_2|576603|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MKTPTSFACGACTAAVLMSFTTTAHAHASTSPPGGVSVAVARRQPGFLSI
GRSSLRSSATTRRISGRGLEELETKHTRGGRMPPPPPQYRRRRRVPTMLV
ETDVKVKEAGIGFGSGSSDSDSMSSKSGSGVADASEGTGPPPVPEDTFRH
KSLAEVPTDYGPYLTIKGFKINAFGFYFCFMALFWAIPWGVFLILYKASL
EFMDKIDPRRHNVDRSSALWGWLTSITTDSLPDITGMENIPKGPAVFVAN
HASWMDVPYTAQLPVRAKYLAKADLARIPILGNAMRMAQHVLLDRDDKRS
QMEALRSALLILKTGTPIFVFPEGTRGPQGRMQSFKMGAFKVATKAGVPI
VPVSIAGTHIMMPKEVIMPQCAGRGITAIHVHPPISIKGRTDQELSDLAF
DIINNALSDEQRAVPSTKKDDSEA*

mRNA from alignment at scaffold_3:568538..570516+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_229 ID=mRNA_229|Name=jgi.p|Nanoce1779_2|576603|organism=Nannochloropsis oceanica|type=mRNA|length=1979bp|location=Sequence derived from alignment at scaffold_3:568538..570516+ (Nannochloropsis oceanica)
CAGGTGTACGATTCCAGGACGGACGACGACTGATTTAATATGAAGACACC
CACGAGCTTTGCATGTGGAGCTTGCACGGCGGCCGTGTTAATGAGTTTCA
CAACAACAGCACATGCCCATGCCAGCACATCACCACCGGGCGGCGTGAGC
GTTGCAGTAGCGCGGCGGCAACCAGGCTTTCTCTCGATAGGGCGCTCATC
TTTGCGATCATCGGCCACGACAAGGAGAATAAGCGGGAGAGGGCTGGAGG
AGCTGGAAACTAAACACACACGGGGCGGCAGAATGCCGCCGCCGCCGCCG
CAGTATCGTCGGCGTAGGAGGGTACCAACTATGCTAGTGGAGACAGACGT
CAAGGTAAAAGAAGCGGGGATCGGCTTTGGGTCAGGAAGCAGCGACAGTG
ACAGCATGAGCAGCAAGAGCGGGTCTGGGGTGGCTGACGCCTCAGAAGGT
ACAGGTCCACCGCCAGTGCCCGAGGATACCTTCCGGCACAAGAGCTTGGC
GGAGGTCCCGACCGACTACGGACCCTACCTGACCATCAAGGGTTTCAAGA
TCAATGCCTTCGGCTTCTATTTCTGCTTTATGGCGCTGTTCTGGGCGATC
CCCTGGGGTGTCTTCCTCATCCTGTACAAGGCGAGCTTGGAGTTCATGGA
CAAGATCGATCCTCGCCGACACAATGTCGACCGCTCCAGTGCCCTATGGG
GCTGGCTGACCAGTATCACTACTGACTCCTTACCCGATATTACGGGCATG
GAGAACATTCCCAAGGGACCAGCGGTACGTGTGGGAGGAAATGAGAAAAA
GAGAGAACAAGGCGTGGGAATGGTCGGATTTGATTCGCCTTTAGTGTCGG
ATGTGAAAGTGGGTCGGGGCCCTTGCATTTTGGGCGGTTGGTCTCATATC
TTCCTGCAGTCAAGCACAAAATACGTTCCCTTTGAGCTTCCCCCATCCTC
ATTGCTTCCCACCCGTCCCTCTTTTCCCAAACCCCTCCGGAAGGTCTTCG
TCGCCAACCACGCCTCCTGGATGGATGTGCCCTACACTGCCCAGCTGCCC
GTCCGCGCCAAGTACCTAGCCAAGGCTGACCTGGCCAGGATCCCTATCCT
GGGCAACGCCATGAGAATGGCTCAGCACGTCCTCCTCGATCGAGACGACA
AGCGCAGCCAAATGGAAGCCCTGCGCTCTGCTCTCCTAATCCTCAAGACA
GGCACCCCCATCTTCGTCTTCCCCGAGGGCACTCGTGGGCCTCAAGGCCG
CATGCAATCCTTCAAGATGGGTGCATTCAAGGTGGCGACCAAGGCAGGCG
TGCCTATAGTGCCTGTGTCTATTGCGGGGACGCATATCATGATGCCTAAG
GAGGTGATCATGCCTCAATGTGCTGGCCGGGGGATCACCGCCATCCATGT
CCACCCTCCCATCTCCATCAAGGGCCGCACTGACCAGGAGCTGTCGGATC
TGGCGTTTGATATAATCAACAATGCGTTATCAGATGAGCAGCGGGCTGTC
CCAAGCACGAAGAAGGACGATTCGGAAGCTTAAGGATGGAAAAGGAAGGA
GACGTGAAGGAATGAGGTGAAGGCATGTCAACATTAGAAGATGGAGATCA
TGAAGAGACCGAAGTAAGGAAATCAAAACCCATTCAGTGAGCCATGTGTA
GATCATTTGCAAGACAGGTGAACAGCAGCAGCAGCAGTAGCCGGTCTCAT
CGAAAAAGACAAGCACCAAGCAGAAGGCAATAACAGGCAATTATTGAATA
GATTTGGAGCACGGGATCAGCGCACAGCCAATAAGATGCCGTGTGCTTTG
TAGCAGGGGGGGGGGTGACGGTAGCGTAGACCTCACGAATATTTGTGGTG
GGGATAAGGAAAATTAAATAATTCACCGTTGGTTTGCAGACGGAGAGTGC
ATGAGATTTCCTAAGACCAGACAGAGACGGGGCAGCTTGATCTGAATCAA
GAGAAAGAAAGACGAACAGACGACAAAAT

Coding sequence (CDS) from alignment at scaffold_3:568538..570516+

>mRNA_229 ID=mRNA_229|Name=jgi.p|Nanoce1779_2|576603|organism=Nannochloropsis oceanica|type=CDS|length=2550bp|location=Sequence derived from alignment at scaffold_3:568538..570516+ (Nannochloropsis oceanica)
ATGAAGACACCCACGAGCTTTGCATGTGGAGCTTGCACGGCGGCCGTGTT
AATGAGTTTCACAACAACAGCACATGCCCATGCCAGCACATCACCACCGG
GCGGCGTGAGCGTTGCAGTAGCGCGGCGGCAACCAGGCTTTCTCTCGATA
GGGCGCTCATCTTTGCGATCATCGGCCACGACAAGGAGAATAAGCGGGAG
AGGGCTGGAGGAGCTGGAAACTAAACACACACGGGGCGGCAGAATGCCGC
CGCCGCCGCCGCAGTATCGTCGGCGTAGGAGGGTACCAACTATGCTAGTG
GAGACAGACGTCAAGGTAAAAGAAGCGGGGATCGGCTTTGGGTCAGGAAG
CAGCGACAGTGACAGCATGAGCAGCAAGAGCGGGTCTGGGGTGGCTGACG
CCTCAGAAGGTACAGGTCCACCGCCAGTGCCCGAGGATACCTTCCGGCAC
AAGAGCTTGGCGGAGGTCCCGACCGACTACGGACCCTACCTGACCATCAA
GGGTTTCAAGATCAATGCCTTCGGCTTCTATTTCTGCTTTATGGCGCTGT
TCTGGGCGATCCCCTGGGGTGTCTTCCTCATCCTGTACAAGGCGAGCTTG
GAGTTCATGGACAAGATCGATCCTCGCCGACACAATGTCGACCGCTCCAG
TGCCCTATGGGGCTGGCTGACCAGTATCACTACTGACTCCTTACCCGATA
TTACGGGCATGGAGAACATTCCCAAGGGACCAGCGGTCTTCGTCGCCAAC
CACGCCTCCTGGATGGATGTGCCCTACACTGCCCAGCTGCCCGTCCGCGC
CAAGTACCTAGCCAAGGCTGACCTGGCCAGGATCCCTATCCTGGGCAACG
CCATGAGAATGGCTCAGCACGTCCTCCTCGATCGAGACGACAAGCGCAGC
CAAATGGAAGCCCTGCGCTCTGCTCTCCTAATCCTCAAGACAGGCACCCC
CATCTTCGTCTTCCCCGAGGGCACTCGTGGGCCTCAAGGCCGCATGCAAT
CCTTCAAGATGGGTGCATTCAAGGTGGCGACCAAGGCAGGCGTGCCTATA
GTGCCTGTGTCTATTGCGGGGACGCATATCATGATGCCTAAGGAGGTGAT
CATGCCTCAATGTGCTGGCCGGGGGATCACCGCCATCCATGTCCACCCTC
CCATCTCCATCAAGGGCCGCACTGACCAGGAGCTGTCGGATCTGGCGTTT
GATATAATCAACAATGCGTTATCAGATGAGCAGCGGGCTGTCCCAAGCAC
GAAGAAGGACGATTCGGAAGCTTAAATGAAGACACCCACGAGCTTTGCAT
GTGGAGCTTGCACGGCGGCCGTGTTAATGAGTTTCACAACAACAGCACAT
GCCCATGCCAGCACATCACCACCGGGCGGCGTGAGCGTTGCAGTAGCGCG
GCGGCAACCAGGCTTTCTCTCGATAGGGCGCTCATCTTTGCGATCATCGG
CCACGACAAGGAGAATAAGCGGGAGAGGGCTGGAGGAGCTGGAAACTAAA
CACACACGGGGCGGCAGAATGCCGCCGCCGCCGCCGCAGTATCGTCGGCG
TAGGAGGGTACCAACTATGCTAGTGGAGACAGACGTCAAGGTAAAAGAAG
CGGGGATCGGCTTTGGGTCAGGAAGCAGCGACAGTGACAGCATGAGCAGC
AAGAGCGGGTCTGGGGTGGCTGACGCCTCAGAAGGTACAGGTCCACCGCC
AGTGCCCGAGGATACCTTCCGGCACAAGAGCTTGGCGGAGGTCCCGACCG
ACTACGGACCCTACCTGACCATCAAGGGTTTCAAGATCAATGCCTTCGGC
TTCTATTTCTGCTTTATGGCGCTGTTCTGGGCGATCCCCTGGGGTGTCTT
CCTCATCCTGTACAAGGCGAGCTTGGAGTTCATGGACAAGATCGATCCTC
GCCGACACAATGTCGACCGCTCCAGTGCCCTATGGGGCTGGCTGACCAGT
ATCACTACTGACTCCTTACCCGATATTACGGGCATGGAGAACATTCCCAA
GGGACCAGCGGTCTTCGTCGCCAACCACGCCTCCTGGATGGATGTGCCCT
ACACTGCCCAGCTGCCCGTCCGCGCCAAGTACCTAGCCAAGGCTGACCTG
GCCAGGATCCCTATCCTGGGCAACGCCATGAGAATGGCTCAGCACGTCCT
CCTCGATCGAGACGACAAGCGCAGCCAAATGGAAGCCCTGCGCTCTGCTC
TCCTAATCCTCAAGACAGGCACCCCCATCTTCGTCTTCCCCGAGGGCACT
CGTGGGCCTCAAGGCCGCATGCAATCCTTCAAGATGGGTGCATTCAAGGT
GGCGACCAAGGCAGGCGTGCCTATAGTGCCTGTGTCTATTGCGGGGACGC
ATATCATGATGCCTAAGGAGGTGATCATGCCTCAATGTGCTGGCCGGGGG
ATCACCGCCATCCATGTCCACCCTCCCATCTCCATCAAGGGCCGCACTGA
CCAGGAGCTGTCGGATCTGGCGTTTGATATAATCAACAATGCGTTATCAG
ATGAGCAGCGGGCTGTCCCAAGCACGAAGAAGGACGATTCGGAAGCTTAA

Synonyms

Publications