jgi.p|Nanoce1779_2|579735, mRNA_2282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579735
Unique NamemRNA_2282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1434
Alignment locationscaffold_4:1267732..1269405 -

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Properties
Property NameValue
TranscriptId579821
TrackFilteredModels2
ProteinId579735
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1267732..1269405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579735gene_2282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579735mRNA_2282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2282CDS_2282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2282 ID=mRNA_2282|Name=jgi.p|Nanoce1779_2|579735|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp
ACAGTTGAGCCTCTCACACATAGGCAGCCTCCCCCCAAAGAGACAAACGA
CGACCTTCCCTCCTCGTGCTGCTAGTACTGCTCCAGCCATGGCGGATGCC
AACCATAGACCAAGAAGAAGAAGGCCCATCTTCCCCTTCCTACTTTCCGC
TTCTCTCTTCTTCCTTCTCTCCTCCCTTCTTCCCAATCTTACCCATGCCT
CAATGGGCTTATCGCCCGAGGCCGCTTCGTGGGCTAGAGTCGAAGACCTT
GCTGCGCAAGTCAAGGAAGTCACCAGTCAGCGGCATCTCCCCCTCTCACT
CGCCCCTCGGAGGCACGGATCGTCCTATCACCTCACTGAAAAGGATTATA
AGAGGAACGCGACGCTTTTATCGTTGGCTGGGCATGATCACGTTGTGCGG
GTAGACCGTGAGAGAAGGATCATTCATGCTGAGGCTGGGGTTACGATGGA
GGCCCTCGTGAGGACTGCGAGGGAATACGGTTTGGTTCCTAAGGTGGTGG
CACCCTTTAGAAAGGCAACTGTGGGAGGAGCGGTGTCAGGCTCCGCCGCC
TCGAGCAGCTCGCACCGCCACGGTTCGTTCCACGACAGCTGCAACTACCT
GACCGTTGTTTTGGGGAATGGAAGTGTGGTTACATGCTCCAAGAAAGACA
ATGCAGAATTGTTCAATTCGATGGCAGGGTCACAAGGGACCTTAGGCTTG
GTAGCGTTGGTAGGAGTGGAGTGTGAAGAAGCCGGTGAGGTTACAAACAG
GGAGGAGGCGAGGGAAGAAGGGAAGGAAAGAGGGCAGGAGGATGAGAGAA
AGAGAGAGCCTATGCAGCATTGCAGCATTGTTTAATTTGATTTAACAGCC
GAGTCACAAGGGACCCTGGCCCTGGTGGCATCGATGGTCGTAGAGTGCAA
AAAGAAGTGAAGGGAGGGAGAGAGGAAGAGTGAAAGATGAACAAAACAAG
TAACTTTTGTCTTCCATTTATCCTTCCTTCTTTCCCTCCTCCCCTCCCTC
AGCACCCACCGTTCGAATTACCTACACCCGTCAAGCCTCAGTCGAGGAGG
GTCTCTCTGCCCTCAAGCATGCCTGTCACTACCCTACCCCTCCTCTTTCT
CCTCAGGGAGGGGCCGAAGGAGGGGGAGGAAGGCCTGACTTTGTGGACGC
GGTGCTATTTCGGGAGAAGGGGAAGAAGGTGGGAGAGGTGGCCCCAGCAA
CACAGTTGACCGCTGAGGCCATCTATGATTTTTCCGAAGTCCCACTAGCA
ACAGCAGTAACAGCGGAAGAAGAACAAGTCGGGACCCGCTCCCACTCCTT
CTCCGAAGGCGCCAAGCTGAACGAAGGCGGCAACCTCCTCCCCTCACCTT
CCTTCCCGCCCTCCCTCCCTCCCTTGTACACCGGGGGGCGTTCTCCTTCT
GATTTGTTTTACTCGGAGCACGTAAATGACATCC
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protein sequence of jgi.p|Nanoce1779_2|579735

>mRNA_2282-protein ID=mRNA_2282-protein|Name=jgi.p|Nanoce1779_2|579735|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MADANHRPRRRRPIFPFLLSASLFFLLSSLLPNLTHASMGLSPEAASWAR
VEDLAAQVKEVTSQRHLPLSLAPRRHGSSYHLTEKDYKRNATLLSLAGHD
HVVRVDRERRIIHAEAGVTMEALVRTAREYGLVPKVVAPFRKATVGGAVS
GSAASSSSHRHGSFHDSCNYLTVVLGNGSVVTCSKKDNAELFNSMAGSQG
TLGLVALVGVECEEAGEVTNREEAREEGKERGQEDERKREPMQHCSIV*
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mRNA from alignment at scaffold_4:1267732..1269405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2282 ID=mRNA_2282|Name=jgi.p|Nanoce1779_2|579735|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp|location=Sequence derived from alignment at scaffold_4:1267732..1269405- (Nannochloropsis oceanica)
ACAGTTGAGCCTCTCACACATAGGCAGCCTCCCCCCAAAGAGACAAACGA
CGACCTTCCCTCCTCGTGCTGCTAGTACTGCTCCAGCCATGGCGGATGCC
AACCATAGACCAAGAAGAAGAAGGCCCATCTTCCCCTTCCTACTTTCCGC
TTCTCTCTTCTTCCTTCTCTCCTCCCTTCTTCCCAATCTTACCCATGCCT
CAATGGGCTTATCGCCCGAGGCCGCTTCGTGGGCTAGAGTCGAAGACCTT
GCTGCGCAAGTCAAGGAAGTCACCAGTCAGCGGCATCTCCCCCTCTCACT
CGCCCCTCGGAGGCACGGATCGTCCTATCACCTCACTGAAAAGGATTATA
AGAGGAACGCGACGCTTTTATCGTTGGCTGGGCATGATCACGTTGTGCGG
GTAGACCGTGAGAGAAGGATCATTCATGCTGAGGCTGGGGTTACGATGGA
GGCCCTCGTGAGGACTGCGAGGGAATACGGTTTGGTTCCTAAGGTGGTGG
CACCCTTTAGAAAGGCAACTGTGGGAGGAGCGGTGAGTAGACAAAAGAGA
CTTTCGACCATGCTCCTCCTCTCTCTTGCTCTTCTCCCCCATTGCCTCCT
TCCCCGTCTTGCTTATTCTTCTCTCTTATTGCTCCCTTCCAGGTGTCAGG
CTCCGCCGCCTCGAGCAGCTCGCACCGCCACGGTTCGTTCCACGACAGCT
GCAACTACCTGACCGTTGTTTTGGGGAATGGAAGTGTGGTTACATGCTCC
AAGAAAGACAATGCAGAATTGTTCAATTCGATGGCAGGGTCACAAGGGAC
CTTAGGCTTGGTAGCGTTGGTAGGAGTGGAGTGTGAAGAAGCCGGTGAGG
TTACAAACAGGGAGGAGGCGAGGGAAGAAGGGAAGGAAAGAGGGCAGGAG
GATGAGAGAAAGAGAGAGCCTATGCAGCATTGCAGCATTGTTTAATTTGA
TTTAACAGCCGAGTCACAAGGGACCCTGGCCCTGGTGGCATCGATGGTCG
TAGAGTGCAAAAAGAAGTGAAGGGAGGGAGAGAGGAAGAGTGAAAGATGA
ACAAAACAAGTAACTTTTGTCTTCCATTTATCCTTCCTTCTTTCCCTCCT
CCCCTCCCTCAGCACCCACCGTTCGAATTACCTACACCCGTCAAGCCTCA
GTCGAGGAGGGTCTCTCTGCCCTCAAGCATGCCTGTCACTACCCTACCCC
TCCTCTTTCTCCTCAGGGAGGGGCCGAAGGAGGGGGAGGAAGGCCTGACT
TTGTGGACGCGGTGCTATTTCGGGAGAAGGGGAAGAAGGTGGGAGAGGTG
GCCCCAGCAACACAGGTGGGTGAAAAGGGAGGGAGAGAGGGAGGGAGGGA
GGGAGGGAATGCTGCACGAAAGACAGCAGTGTATTCATCGATTCGCTGTT
TCCTCCATCCCTCCCTCCCTCCCTCCCTCTCACCTGTCTTTGCAGTTGAC
CGCTGAGGCCATCTATGATTTTTCCGAAGTCCCACTAGCAACAGCAGTAA
CAGCGGAAGAAGAACAAGTCGGGACCCGCTCCCACTCCTTCTCCGAAGGC
GCCAAGCTGAACGAAGGCGGCAACCTCCTCCCCTCACCTTCCTTCCCGCC
CTCCCTCCCTCCCTTGTACACCGGGGGGCGTTCTCCTTCTGATTTGTTTT
ACTCGGAGCACGTAAATGACATCC
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Coding sequence (CDS) from alignment at scaffold_4:1267732..1269405-

>mRNA_2282 ID=mRNA_2282|Name=jgi.p|Nanoce1779_2|579735|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_4:1267732..1269405- (Nannochloropsis oceanica)
GTGTCAGGCTCCGCCGCCTCGAGCAGCTCGCACCGCCACGGTTCGTTCCA
CGACAGCTGCAACTACCTGACCGTTGTTTTGGGGAATGGAAGTGTGGTTA
CATGCTCCAAGAAAGACAATGCAGAATTGTTCAATTCGATGGCAGGGTCA
CAAGGGACCTTAGGCTTGGTAGCGTTGGTAGGAGTGGAGTGTGAAGAAGC
CGGTGAGGTTACAAACAGGGAGGAGGCGAGGGAAGAAGGGAAGGAAAGAG
GGCAGGAGGATGAGAGAAAGAGAGAGCCTATGCAGCATTGCAGCATTGTT
TAAATGGCGGATGCCAACCATAGACCAAGAAGAAGAAGGCCCATCTTCCC
CTTCCTACTTTCCGCTTCTCTCTTCTTCCTTCTCTCCTCCCTTCTTCCCA
ATCTTACCCATGCCTCAATGGGCTTATCGCCCGAGGCCGCTTCGTGGGCT
AGAGTCGAAGACCTTGCTGCGCAAGTCAAGGAAGTCACCAGTCAGCGGCA
TCTCCCCCTCTCACTCGCCCCTCGGAGGCACGGATCGTCCTATCACCTCA
CTGAAAAGGATTATAAGAGGAACGCGACGCTTTTATCGTTGGCTGGGCAT
GATCACGTTGTGCGGGTAGACCGTGAGAGAAGGATCATTCATGCTGAGGC
TGGGGTTACGATGGAGGCCCTCGTGAGGACTGCGAGGGAATACGGTTTGG
TTCCTAAGGTGGTGGCACCCTTTAGAAAGGCAACTGTGGGAGGAGCGGTG
TCAGGCTCCGCCGCCTCGAGCAGCTCGCACCGCCACGGTTCGTTCCACGA
CAGCTGCAACTACCTGACCGTTGTTTTGGGGAATGGAAGTGTGGTTACAT
GCTCCAAGAAAGACAATGCAGAATTGTTCAATTCGATGGCAGGGTCACAA
GGGACCTTAGGCTTGGTAGCGTTGGTAGGAGTGGAGTGTGAAGAAGCCGG
TGAGGTTACAAACAGGGAGGAGGCGAGGGAAGAAGGGAAGGAAAGAGGGC
AGGAGGATGAGAGAAAGAGAGAGCCTATGCAGCATTGCAGCATTGTTTAA
ATGGCGGATGCCAACCATAGACCAAGAAGAAGAAGGCCCATCTTCCCCTT
CCTACTTTCCGCTTCTCTCTTCTTCCTTCTCTCCTCCCTTCTTCCCAATC
TTACCCATGCCTCAATGGGCTTATCGCCCGAGGCCGCTTCGTGGGCTAGA
GTCGAAGACCTTGCTGCGCAAGTCAAGGAAGTCACCAGTCAGCGGCATCT
CCCCCTCTCACTCGCCCCTCGGAGGCACGGATCGTCCTATCACCTCACTG
AAAAGGATTATAAGAGGAACGCGACGCTTTTATCGTTGGCTGGGCATGAT
CACGTTGTGCGGGTAGACCGTGAGAGAAGGATCATTCATGCTGAGGCTGG
GGTTACGATGGAGGCCCTCGTGAGGACTGCGAGGGAATACGGTTTGGTTC
CTAAGGTGGTGGCACCCTTTAGAAAGGCAACTGTGGGAGGAGCG
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Synonyms
Publications