jgi.p|Nanoce1779_2|579731, mRNA_2280 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579731
Unique NamemRNA_2280
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length985
Alignment locationscaffold_4:1264775..1266175 +

Link to JBrowse

Properties
Property NameValue
TranscriptId579817
TrackFilteredModels2
ProteinId579731
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1264775..1266175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579731gene_2280Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579731mRNA_2280-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2280CDS_2280Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Nanoce1779_2|579731|organism=Nannochloropsis oceanica|type=mRNA|length=985bp
ACAGGATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCCCGCC
GTAGCAGGCTTCATGCTCTCTGGCGGCTTCAAGGGACAACAATCTCACTC
CCTCGTCCGTCCTACCAGCACCGCCCAACGCTCCGGTGCGGGGTCCCTGA
CCATGCGTCTCTTCGATCACAAGCGTCGTGAGATTAAGTTCATCGAAGAT
ATCACAGGTGCTCCTGCCCCAGGGGAGGAAGGGCACAAGGAGCCGAACCT
GACCAACCTCCGTCCGTTCCCCGGAAACTACCCCAAGCGCCACCGAAAGG
GCCGCGGGCATGCTGGAGGCGGGGGTGGGAGCAGTGGATATGGAATGCGT
GGTCAGAACTCCCGGGGTGGGGTTCGCCCGGGGTTTGAGGGAGGGCAGAC
GACGCAGTATCGACGTTCGCCCAAATGGCCGGGGCGTCCCATGGGCCCGG
GTCATACCCGTACGAGGTATGCACTGGTGAAGTTGGAGCATTTGAACGAG
GCGGCGGAGCTGTTCCCAACGCGCACGATCATCGACCCTGGCTTTTTGCT
GGATCAGTTCGTGGTGTCCAAGCAGAAGCTCGAGCTGTTCAAGGTGGTTG
GGGGCGACATCCCTCTCACGCGGCCTTTGACGGTGTTGGCGCACGGTTTC
ACGGCCTCGGCGGCGGCGGCGATTGAAGCGGCGGGGGGAAAGTGCGTGCT
CTTGTCGCCTACGACGAATGAGGTGGTGGAGATGGAGGGGGTGGACGTGG
AGGGGATCTTGGCGTTGCTTGATAAAGAGGAGGCGATCACTGAGCAGGAG
GAGGCCGAGGGAAAATATGTGGATATCCCCCGTCCGGGAGGAGCACGGGA
GAGGATCCGCGCGGAGATCAGGCAGGAGGACAAGGAGGCGTATGCCCGGC
TAGCCAATGCGTAAATGAAGAAGGGAGGGAGGGAGGGAGGGAGGTAGAGA
GTTTCAACTCTGTCGCTCTATACATACGAGGAAGA
back to top

protein sequence of jgi.p|Nanoce1779_2|579731

>mRNA_2280-protein ID=mRNA_2280-protein|Name=jgi.p|Nanoce1779_2|579731|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MGGRRILLALAAIPAVAGFMLSGGFKGQQSHSLVRPTSTAQRSGAGSLTM
RLFDHKRREIKFIEDITGAPAPGEEGHKEPNLTNLRPFPGNYPKRHRKGR
GHAGGGGGSSGYGMRGQNSRGGVRPGFEGGQTTQYRRSPKWPGRPMGPGH
TRTRYALVKLEHLNEAAELFPTRTIIDPGFLLDQFVVSKQKLELFKVVGG
DIPLTRPLTVLAHGFTASAAAAIEAAGGKCVLLSPTTNEVVEMEGVDVEG
ILALLDKEEAITEQEEAEGKYVDIPRPGGARERIRAEIRQEDKEAYARLA
NA*
back to top

mRNA from alignment at scaffold_4:1264775..1266175+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Nanoce1779_2|579731|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp|location=Sequence derived from alignment at scaffold_4:1264775..1266175+ (Nannochloropsis oceanica)
ACAGGATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCCCGCC
GTAGCAGGTATGTAACACGAGAAGAGGAGGAGGAGAGGAGGCAGGGAGGG
AGGGAGGAGAGCAACAGCACGTATGGGTAGGAGGGATAGACCGACGTATA
TGCTGTGCACGCTTAGCTCGTGGGGGGACTCTGATAGCTACTATCGCATG
CGTTTAGGCACGATGCTTAAGAGTTTAGGTCCATTCTGTCTCGTAACCAC
GGGTTGGATGCTGGATTGGACGCTTGAGGAGGAAGAGGACCTGGTGGCGC
TGTACGTTAGCGCGTCCTCATTTCCCAGCCTACAACCACCGCCGCGGTCC
CAACAGAGAGCATGCTCTTACTTTTGGTCTCGAGGGACAATCATGTCGCC
AGGTCTCTCTCTCCTCATCTGTCTTACCCCTGATCTAATCCACCCTTCCT
TGCTTTCCCTCCCTTCGAACCAGGCTTCATGCTCTCTGGCGGCTTCAAGG
GACAACAATCTCACTCCCTCGTCCGTCCTACCAGCACCGCCCAACGCTCC
GGTGCGGGGTCCCTGACCATGCGTCTCTTCGATCACAAGCGTCGTGAGAT
TAAGTTCATCGAAGATATCACAGGTGCTCCTGCCCCAGGGGAGGAAGGGC
ACAAGGAGCCGAACCTGACCAACCTCCGTCCGTTCCCCGGAAACTACCCC
AAGCGCCACCGAAAGGGCCGCGGGCATGCTGGAGGCGGGGGTGGGAGCAG
TGGATATGGAATGCGTGGTCAGAACTCCCGGGGTGGGGTTCGCCCGGGGT
TTGAGGGAGGGCAGACGACGCAGTATCGACGTTCGCCCAAATGGCCGGGG
CGTCCCATGGGCCCGGGTCATACCCGTACGAGGTATGCACTGGTGAAGTT
GGAGCATTTGAACGAGGCGGCGGAGCTGTTCCCAACGCGCACGATCATCG
ACCCTGGCTTTTTGCTGGATCAGTTCGTGGTGTCCAAGCAGAAGCTCGAG
CTGTTCAAGGTGGTTGGGGGCGACATCCCTCTCACGCGGCCTTTGACGGT
GTTGGCGCACGGTTTCACGGCCTCGGCGGCGGCGGCGATTGAAGCGGCGG
GGGGAAAGTGCGTGCTCTTGTCGCCTACGACGAATGAGGTGGTGGAGATG
GAGGGGGTGGACGTGGAGGGGATCTTGGCGTTGCTTGATAAAGAGGAGGC
GATCACTGAGCAGGAGGAGGCCGAGGGAAAATATGTGGATATCCCCCGTC
CGGGAGGAGCACGGGAGAGGATCCGCGCGGAGATCAGGCAGGAGGACAAG
GAGGCGTATGCCCGGCTAGCCAATGCGTAAATGAAGAAGGGAGGGAGGGA
GGGAGGGAGGTAGAGAGTTTCAACTCTGTCGCTCTATACATACGAGGAAG
A
back to top

Coding sequence (CDS) from alignment at scaffold_4:1264775..1266175+

>mRNA_2280 ID=mRNA_2280|Name=jgi.p|Nanoce1779_2|579731|organism=Nannochloropsis oceanica|type=CDS|length=1818bp|location=Sequence derived from alignment at scaffold_4:1264775..1266175+ (Nannochloropsis oceanica)
ATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCCCGCCGTAGC
AGGCTTCATGCTCTCTGGCGGCTTCAAGGGACAACAATCTCACTCCCTCG
TCCGTCCTACCAGCACCGCCCAACGCTCCGGTGCGGGGTCCCTGACCATG
CGTCTCTTCGATCACAAGCGTCGTGAGATTAAGTTCATCGAAGATATCAC
AGGTGCTCCTGCCCCAGGGGAGGAAGGGCACAAGGAGCCGAACCTGACCA
ACCTCCGTCCGTTCCCCGGAAACTACCCCAAGCGCCACCGAAAGGGCCGC
GGGCATGCTGGAGGCGGGGGTGGGAGCAGTGGATATGGAATGCGTGGTCA
GAACTCCCGGGGTGGGGTTCGCCCGGGGTTTGAGGGAGGGCAGACGACGC
AGTATCGACGTTCGCCCAAATGGCCGGGGCGTCCCATGGGCCCGGGTCAT
ACCCGTACGAGGTATGCACTGGTGAAGTTGGAGCATTTGAACGAGGCGGC
GGAGCTGTTCCCAACGCGCACGATCATCGACCCTGGCTTTTTGCTGGATC
AGTTCGTGGTGTCCAAGCAGAAGCTCGAGCTGTTCAAGGTGGTTGGGGGC
GACATCCCTCTCACGCGGCCTTTGACGGTGTTGGCGCACGGTTTCACGGC
CTCGGCGGCGGCGGCGATTGAAGCGGCGGGGGGAAAGTGCGTGCTCTTGT
CGCCTACGACGAATGAGGTGGTGGAGATGGAGGGGGTGGACGTGGAGGGG
ATCTTGGCGTTGCTTGATAAAGAGGAGGCGATCACTGAGCAGGAGGAGGC
CGAGGGAAAATATGTGGATATCCCCCGTCCGGGAGGAGCACGGGAGAGGA
TCCGCGCGGAGATCAGGCAGGAGGACAAGGAGGCGTATGCCCGGCTAGCC
AATGCGTAAATGGGTGGTCGACGCATCCTCTTGGCCCTTGCGGCCATCCC
CGCCGTAGCAGGCTTCATGCTCTCTGGCGGCTTCAAGGGACAACAATCTC
ACTCCCTCGTCCGTCCTACCAGCACCGCCCAACGCTCCGGTGCGGGGTCC
CTGACCATGCGTCTCTTCGATCACAAGCGTCGTGAGATTAAGTTCATCGA
AGATATCACAGGTGCTCCTGCCCCAGGGGAGGAAGGGCACAAGGAGCCGA
ACCTGACCAACCTCCGTCCGTTCCCCGGAAACTACCCCAAGCGCCACCGA
AAGGGCCGCGGGCATGCTGGAGGCGGGGGTGGGAGCAGTGGATATGGAAT
GCGTGGTCAGAACTCCCGGGGTGGGGTTCGCCCGGGGTTTGAGGGAGGGC
AGACGACGCAGTATCGACGTTCGCCCAAATGGCCGGGGCGTCCCATGGGC
CCGGGTCATACCCGTACGAGGTATGCACTGGTGAAGTTGGAGCATTTGAA
CGAGGCGGCGGAGCTGTTCCCAACGCGCACGATCATCGACCCTGGCTTTT
TGCTGGATCAGTTCGTGGTGTCCAAGCAGAAGCTCGAGCTGTTCAAGGTG
GTTGGGGGCGACATCCCTCTCACGCGGCCTTTGACGGTGTTGGCGCACGG
TTTCACGGCCTCGGCGGCGGCGGCGATTGAAGCGGCGGGGGGAAAGTGCG
TGCTCTTGTCGCCTACGACGAATGAGGTGGTGGAGATGGAGGGGGTGGAC
GTGGAGGGGATCTTGGCGTTGCTTGATAAAGAGGAGGCGATCACTGAGCA
GGAGGAGGCCGAGGGAAAATATGTGGATATCCCCCGTCCGGGAGGAGCAC
GGGAGAGGATCCGCGCGGAGATCAGGCAGGAGGACAAGGAGGCGTATGCC
CGGCTAGCCAATGCGTAA
back to top
Synonyms
Publications