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Properties
| Property Name | Value |
|---|
| TranscriptId | 299065 |
| Track | FilteredModels2 |
| ProteinId | 298979 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_4 | supercontig | scaffold_4:1263023..1264410 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2279 ID=mRNA_2279|Name=jgi.p|Nanoce1779_2|298979|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp
CGAGATGCCTCTTTCGGACGACGACTACGCCCTCACACCTAGGTTGATTT
ACGACGCCCTGTACACCCGCCCACACAGGCAGAGTCACAGTCACACACAA
GGTATCTTGTGAAGGGCAAAAATATCAGAATTCCCGGCTTCTCCTGCTCC
GGGTCTCCTTCATCATTTGATTACCATAAGCTGCCTTCATTCTCCTCCTC
TACGTCCGCCTCATCGCCCCACGTCCGCGCTACAACTCCTCGTCCTTCTT
CTTGTTATCCTGGTTGTCGACCTAGTATCAAATATTCTTGGCTCTCCATC
TTTGGTTGTCACCGCGCGTGCTACTCGGATCACCGTCAGCTGGAGCAGCA
TCAGTAGGAGTAGCACTTTCGCAGCATTTCTCACTACCAAGCCCCTCGTC
TTTTTCCCTCCCTTGACAAACTTCCTCATGCCTCCCAAGCGTAAGGTAAG
CGTTCGCGGGGTCATTACTCCGGGCGCTGGCACAAAAAATACCAATGCCA
GTGCTGCGTCCTCATCCCCCTCGCCCTCCTCGACCAACAAGAAAGCCAAA
GCACCGGCCGCTGCCAAATCTTCATCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCTT
CCTCCTCCTCCTCCTCTGGACTCCGCTACTTTCTAATGAAATCCGAGCCC
CACGAATTCAGTGTCGATGACCTTGCATCCCAATCCGCGCAGACCCATTG
CTGGGAAGGCGTGCGGAATTACCAAGCCCGCAACGTTATGAGGGATCAAA
TGCGCGAGGGAGACAAGGCTTTCTTTTATCATTCTTCGTGTAAGGTGCCG
GGGATTGTCGGTCTGGTGGAGATCACCAAAAAGGCATATCCGGATTATTT
TCAGTGGGATAAGAAAAGTAAGTACTTTGATGAGAAGAGCACGAAAGAGG
CTCCGCGCTGGTGGATGGTCGATGTGACACTCCGGGAGAAGTTAGAGGAG
ATCGTCCCATTGGAGGGCTTGAGGGAAGAAGGGCTGAAAAAGGGGAGTCC
GTTGGCGGCGATGGCGCTGCTTCAGAAGGGCTCCAGGCTGAGTGTGCAAC
CGGTAAGAGAGGAGGAGTGGCGATTTATTTGCGAGAGGATGATTAAGAAG
CAAGGGGGCCAAGAGGTAAAGAATGGGGGAGAAAGAGTAAAGAGGGAGAA
GGGGAAAGGAGCAGAAGATAAGTAGGATGGTGATGAGAAATTGGATTGGG
AGCTGCACATCAGAATGAGGAGTAGAGGAAAATAAGGGATAGCAGACAAA
AATAAATGTAGCGTAATTGCGTGTGATTAGAAATGATATGAACAAAATTA
AACAACAACTGTAACACTTTATCTCTGAATGAATTCTT back to topprotein sequence of jgi.p|Nanoce1779_2|298979 >mRNA_2279-protein ID=mRNA_2279-protein|Name=jgi.p|Nanoce1779_2|298979|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MPPKRKVSVRGVITPGAGTKNTNASAASSSPSPSSTNKKAKAPAAAKSSS
SSSSSSSSSSSSSSSSSPSSSSSSSSSSSSGLRYFLMKSEPHEFSVDDLA
SQSAQTHCWEGVRNYQARNVMRDQMREGDKAFFYHSSCKVPGIVGLVEIT
KKAYPDYFQWDKKSKYFDEKSTKEAPRWWMVDVTLREKLEEIVPLEGLRE
EGLKKGSPLAAMALLQKGSRLSVQPVREEEWRFICERMIKKQGGQEVKNG
GERVKREKGKGAEDK* back to topmRNA from alignment at scaffold_4:1263023..1264410- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2279 ID=mRNA_2279|Name=jgi.p|Nanoce1779_2|298979|organism=Nannochloropsis oceanica|type=mRNA|length=1388bp|location=Sequence derived from alignment at scaffold_4:1263023..1264410- (Nannochloropsis oceanica)
CGAGATGCCTCTTTCGGACGACGACTACGCCCTCACACCTAGGTTGATTT
ACGACGCCCTGTACACCCGCCCACACAGGCAGAGTCACAGTCACACACAA
GGTATCTTGTGAAGGGCAAAAATATCAGAATTCCCGGCTTCTCCTGCTCC
GGGTCTCCTTCATCATTTGATTACCATAAGCTGCCTTCATTCTCCTCCTC
TACGTCCGCCTCATCGCCCCACGTCCGCGCTACAACTCCTCGTCCTTCTT
CTTGTTATCCTGGTTGTCGACCTAGTATCAAATATTCTTGGCTCTCCATC
TTTGGTTGTCACCGCGCGTGCTACTCGGATCACCGTCAGCTGGAGCAGCA
TCAGTAGGAGTAGCACTTTCGCAGCATTTCTCACTACCAAGCCCCTCGTC
TTTTTCCCTCCCTTGACAAACTTCCTCATGCCTCCCAAGCGTAAGGTAAG
CGTTCGCGGGGTCATTACTCCGGGCGCTGGCACAAAAAATACCAATGCCA
GTGCTGCGTCCTCATCCCCCTCGCCCTCCTCGACCAACAAGAAAGCCAAA
GCACCGGCCGCTGCCAAATCTTCATCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCTCCTCCTCCTCTT
CCTCCTCCTCCTCCTCTGGACTCCGCTACTTTCTAATGAAATCCGAGCCC
CACGAATTCAGTGTCGATGACCTTGCATCCCAATCCGCGCAGACCCATTG
CTGGGAAGGCGTGCGGAATTACCAAGCCCGCAACGTTATGAGGGATCAAA
TGCGCGAGGGAGACAAGGCTTTCTTTTATCATTCTTCGTGTAAGGTGCCG
GGGATTGTCGGTCTGGTGGAGATCACCAAAAAGGCATATCCGGATTATTT
TCAGTGGGATAAGAAAAGTAAGTACTTTGATGAGAAGAGCACGAAAGAGG
CTCCGCGCTGGTGGATGGTCGATGTGACACTCCGGGAGAAGTTAGAGGAG
ATCGTCCCATTGGAGGGCTTGAGGGAAGAAGGGCTGAAAAAGGGGAGTCC
GTTGGCGGCGATGGCGCTGCTTCAGAAGGGCTCCAGGCTGAGTGTGCAAC
CGGTAAGAGAGGAGGAGTGGCGATTTATTTGCGAGAGGATGATTAAGAAG
CAAGGGGGCCAAGAGGTAAAGAATGGGGGAGAAAGAGTAAAGAGGGAGAA
GGGGAAAGGAGCAGAAGATAAGTAGGATGGTGATGAGAAATTGGATTGGG
AGCTGCACATCAGAATGAGGAGTAGAGGAAAATAAGGGATAGCAGACAAA
AATAAATGTAGCGTAATTGCGTGTGATTAGAAATGATATGAACAAAATTA
AACAACAACTGTAACACTTTATCTCTGAATGAATTCTT back to topCoding sequence (CDS) from alignment at scaffold_4:1263023..1264410- >mRNA_2279 ID=mRNA_2279|Name=jgi.p|Nanoce1779_2|298979|organism=Nannochloropsis oceanica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_4:1263023..1264410- (Nannochloropsis oceanica)
ATGCCTCCCAAGCGTAAGGTAAGCGTTCGCGGGGTCATTACTCCGGGCGC
TGGCACAAAAAATACCAATGCCAGTGCTGCGTCCTCATCCCCCTCGCCCT
CCTCGACCAACAAGAAAGCCAAAGCACCGGCCGCTGCCAAATCTTCATCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CCCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCTGGACTCCGCT
ACTTTCTAATGAAATCCGAGCCCCACGAATTCAGTGTCGATGACCTTGCA
TCCCAATCCGCGCAGACCCATTGCTGGGAAGGCGTGCGGAATTACCAAGC
CCGCAACGTTATGAGGGATCAAATGCGCGAGGGAGACAAGGCTTTCTTTT
ATCATTCTTCGTGTAAGGTGCCGGGGATTGTCGGTCTGGTGGAGATCACC
AAAAAGGCATATCCGGATTATTTTCAGTGGGATAAGAAAAGTAAGTACTT
TGATGAGAAGAGCACGAAAGAGGCTCCGCGCTGGTGGATGGTCGATGTGA
CACTCCGGGAGAAGTTAGAGGAGATCGTCCCATTGGAGGGCTTGAGGGAA
GAAGGGCTGAAAAAGGGGAGTCCGTTGGCGGCGATGGCGCTGCTTCAGAA
GGGCTCCAGGCTGAGTGTGCAACCGGTAAGAGAGGAGGAGTGGCGATTTA
TTTGCGAGAGGATGATTAAGAAGCAAGGGGGCCAAGAGGTAAAGAATGGG
GGAGAAAGAGTAAAGAGGGAGAAGGGGAAAGGAGCAGAAGATAAGTAG back to top
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