jgi.p|Nanoce1779_2|579712, mRNA_2276 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579712
Unique NamemRNA_2276
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1334
Alignment locationscaffold_4:1245705..1247038 +

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Properties
Property NameValue
TranscriptId579798
TrackFilteredModels2
ProteinId579712
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1245705..1247038 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579712gene_2276Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579712mRNA_2276-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2276CDS_2276Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2276 ID=mRNA_2276|Name=jgi.p|Nanoce1779_2|579712|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp
TACCTTGAACGCTTCCTCTTATCTGTGTGTATGTATGTGAAGCGGTGAGT
GGAGGAGTGCGCTCTGCCAGAGGTGCTTGGTATTGTGCTCCTTAATGCGC
TCTTGTTGGCAGTGGACGGGATGTGACACCCTCCGCTCGGCGCCAAAAAA
GTAATTATGCCAGCCGCGCTGCCTCCTGGAGGCCTCCATGATGCCAAGAT
CAGACTCTGTTTGGGCAAACACAATGTTGGAAGCCAGCCGTCCAGGTGGC
CAGTTGAAAGGCATGTGACATCGGGGATGGCGGACTTGGCTCGATTTTGG
AGTACGTCTCCTCAAAGTGGAACGACAACAAATCCTACTGCAATCCGTCT
TTTCCTTGGACTCTTGTGCCTCTCCCTTACCCTGCCCTTGCTGGCATATC
GTCTTGTAAATTGCGTATGTGCAAATTGTGGCGTGGAAAGGTTTGCGGCG
CGTGATCAAGAGGAGACGCTAGCATCGTGTGTGTATGTCTCGTGCTATGG
GAAACCCGAGGGAAGTCGCCAGTGGCGACACGCACTTGCAACATGGCCAA
GAAGACCAAGCAAAAGTTTATCCGTCCCTGGTTTCAGCTATGTAAAATAC
ATACCTTCGTTCGATCAGTCAGATCCTATTGTTTAAGTTGCTGTGCCTAA
TTTGACGAACAAGAGCTATGAAAAATGTGGAGGCGAAGAGTTTTCCACGT
GAACGTGTTCCGACGTGTTCGCCTTCTTTGCCGGTTGTGCTCTTCGAGAT
ATCTTGGAGGGCCCTATAGTAAACTAAAAGCACAATATGTGTTCACAATT
TCAAGTGAATCGCAATCTCTGAACCTGTGCCTCCTGTTTGTTACTGTGGC
AAGCGCCTTTGTCCTCCCCCCTGCCCTCTCTTGCCTTCCGGCGTCTGGCC
CATGTCGATTTTTCCCCTCTCATGTCAATGTGTTTCCAATGTGACGATCT
TACTCCAGCACGATTATTCAGAGCATTGTCTTTCCCTCTTTTATATCACT
TAAATCAAAGAATCGTCCAAAAAAGAATACAGAAGAAAACAAGAACCTCC
CCTTTTCTATAAATAAGTCCACGTGCCGTACTTTTCGATTATTTATTTTC
CTATTGTCTTCATATTTTTAATGCATACCATTCGTCTCCTTCTCTCTCGT
TTCATTCCCTAATCCCACGCGCCTCCACTCTACTCAAAACGCTCCAGTTC
CTCCCTCGACCGGCAGCACCATGGGCTGCACCTCTGGGCAAACAGCTGAC
AAGGAGTCTACCACATACCCGGCCCTCTCCGCCTGCTCCCGCAAGTCCTT
CAATGTTGCCAGCAAATGTACCCCTCTCGCCCCC
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protein sequence of jgi.p|Nanoce1779_2|579712

>mRNA_2276-protein ID=mRNA_2276-protein|Name=jgi.p|Nanoce1779_2|579712|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MPAALPPGGLHDAKIRLCLGKHNVGSQPSRWPVERHVTSGMADLARFWST
SPQSGTTTNPTAIRLFLGLLCLSLTLPLLAYRLVNCVCANCGVERFAARD
QEETLASCVYVSCYGKPEGSRQWRHALATWPRRPSKSLSVPGFSYVKYIP
SFDQSDPIV*
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mRNA from alignment at scaffold_4:1245705..1247038+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2276 ID=mRNA_2276|Name=jgi.p|Nanoce1779_2|579712|organism=Nannochloropsis oceanica|type=mRNA|length=1334bp|location=Sequence derived from alignment at scaffold_4:1245705..1247038+ (Nannochloropsis oceanica)
TACCTTGAACGCTTCCTCTTATCTGTGTGTATGTATGTGAAGCGGTGAGT
GGAGGAGTGCGCTCTGCCAGAGGTGCTTGGTATTGTGCTCCTTAATGCGC
TCTTGTTGGCAGTGGACGGGATGTGACACCCTCCGCTCGGCGCCAAAAAA
GTAATTATGCCAGCCGCGCTGCCTCCTGGAGGCCTCCATGATGCCAAGAT
CAGACTCTGTTTGGGCAAACACAATGTTGGAAGCCAGCCGTCCAGGTGGC
CAGTTGAAAGGCATGTGACATCGGGGATGGCGGACTTGGCTCGATTTTGG
AGTACGTCTCCTCAAAGTGGAACGACAACAAATCCTACTGCAATCCGTCT
TTTCCTTGGACTCTTGTGCCTCTCCCTTACCCTGCCCTTGCTGGCATATC
GTCTTGTAAATTGCGTATGTGCAAATTGTGGCGTGGAAAGGTTTGCGGCG
CGTGATCAAGAGGAGACGCTAGCATCGTGTGTGTATGTCTCGTGCTATGG
GAAACCCGAGGGAAGTCGCCAGTGGCGACACGCACTTGCAACATGGCCAA
GAAGACCAAGCAAAAGTTTATCCGTCCCTGGTTTCAGCTATGTAAAATAC
ATACCTTCGTTCGATCAGTCAGATCCTATTGTTTAAGTTGCTGTGCCTAA
TTTGACGAACAAGAGCTATGAAAAATGTGGAGGCGAAGAGTTTTCCACGT
GAACGTGTTCCGACGTGTTCGCCTTCTTTGCCGGTTGTGCTCTTCGAGAT
ATCTTGGAGGGCCCTATAGTAAACTAAAAGCACAATATGTGTTCACAATT
TCAAGTGAATCGCAATCTCTGAACCTGTGCCTCCTGTTTGTTACTGTGGC
AAGCGCCTTTGTCCTCCCCCCTGCCCTCTCTTGCCTTCCGGCGTCTGGCC
CATGTCGATTTTTCCCCTCTCATGTCAATGTGTTTCCAATGTGACGATCT
TACTCCAGCACGATTATTCAGAGCATTGTCTTTCCCTCTTTTATATCACT
TAAATCAAAGAATCGTCCAAAAAAGAATACAGAAGAAAACAAGAACCTCC
CCTTTTCTATAAATAAGTCCACGTGCCGTACTTTTCGATTATTTATTTTC
CTATTGTCTTCATATTTTTAATGCATACCATTCGTCTCCTTCTCTCTCGT
TTCATTCCCTAATCCCACGCGCCTCCACTCTACTCAAAACGCTCCAGTTC
CTCCCTCGACCGGCAGCACCATGGGCTGCACCTCTGGGCAAACAGCTGAC
AAGGAGTCTACCACATACCCGGCCCTCTCCGCCTGCTCCCGCAAGTCCTT
CAATGTTGCCAGCAAATGTACCCCTCTCGCCCCC
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Coding sequence (CDS) from alignment at scaffold_4:1245705..1247038+

>mRNA_2276 ID=mRNA_2276|Name=jgi.p|Nanoce1779_2|579712|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_4:1245705..1247038+ (Nannochloropsis oceanica)
ATGCCAGCCGCGCTGCCTCCTGGAGGCCTCCATGATGCCAAGATCAGACT
CTGTTTGGGCAAACACAATGTTGGAAGCCAGCCGTCCAGGTGGCCAGTTG
AAAGGCATGTGACATCGGGGATGGCGGACTTGGCTCGATTTTGGAGTACG
TCTCCTCAAAGTGGAACGACAACAAATCCTACTGCAATCCGTCTTTTCCT
TGGACTCTTGTGCCTCTCCCTTACCCTGCCCTTGCTGGCATATCGTCTTG
TAAATTGCGTATGTGCAAATTGTGGCGTGGAAAGGTTTGCGGCGCGTGAT
CAAGAGGAGACGCTAGCATCGTGTGTGTATGTCTCGTGCTATGGGAAACC
CGAGGGAAGTCGCCAGTGGCGACACGCACTTGCAACATGGCCAAGAAGAC
CAAGCAAAAGTTTATCCGTCCCTGGTTTCAGCTATGTAAAATACATACCT
TCGTTCGATCAGTCAGATCCTATTGTTTAA
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Synonyms
Publications