jgi.p|Nanoce1779_2|298677, mRNA_2274 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|298677
Unique NamemRNA_2274
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_4:1241111..1242503 -

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Properties
Property NameValue
TranscriptId298763
TrackFilteredModels2
ProteinId298677
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:1241111..1242503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298677gene_2274Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|298677mRNA_2274-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2274CDS_2274Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2274 ID=mRNA_2274|Name=jgi.p|Nanoce1779_2|298677|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
CCTTCCCCTCCTTCCCCTTCTCCTCCTTTCTTCCCTCCCTCCCTCGCTTA
GATACAACGATCCGATCATCTACATCACCGAAAACGGCGTCTCGGGTCCC
AAGGAAGATGAAGTTAAATCAGATGCAGAAGGCTTGAACGACACCTTCCG
TCAGACGTTTATGCAAGGCTATATCGCTGAGATGTACAAGGCCATCAAGT
TCGACAAGGTTAATGTCGCAGGATATTTCTACTGGGCTTTAATGGATAAT
TTCGAATGGGCCGACGGTTACCGCCCTCGTTTCGGGATCATCCGTGTGAA
TTTCACCAGCCAAGCTCGCTATCCTAAGGAAAGCGCACTCATGTATAAGG
ATATGATGACTCGTTTCTCACCTACCGAGGCCGTGCCAGTCATCCCTACT
ACTCCTGCTGCTGGTGCAGCTGCTGCTGAAGAAGCAAATCCCGCTGGGCC
TGTTGCACCTATAGCTCCGATTGTGCCGGTGTGGCCCAAACCCACGTGCT
TGCGGAAGAGCTTCAGGGATTCGAGGAGGGAGAAGAGGGAGTGATGGAGG
TGGAGGTGGGTGAGGAGGGAGGACAGCAACGATTGCGGAAGCTGTAGGAG
ATGGGTGAAAGAAAGGAATGAGGGAGGGAGGGAGGCAGGGGGATCGAAAT
TCGTGTGATATATGATAATTCTTGTAGAAAGCTCAAAAAGAAGTAAAGAC
AGTGTGAGAGTTCGCAATGTAA
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protein sequence of jgi.p|Nanoce1779_2|298677

>mRNA_2274-protein ID=mRNA_2274-protein|Name=jgi.p|Nanoce1779_2|298677|organism=Nannochloropsis oceanica|type=polypeptide|length=128bp
MQGYIAEMYKAIKFDKVNVAGYFYWALMDNFEWADGYRPRFGIIRVNFTS
QARYPKESALMYKDMMTRFSPTEAVPVIPTTPAAGAAAAEEANPAGPVAP
IAPIVPVWPKPTCLRKSFRDSRREKRE*
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mRNA from alignment at scaffold_4:1241111..1242503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2274 ID=mRNA_2274|Name=jgi.p|Nanoce1779_2|298677|organism=Nannochloropsis oceanica|type=mRNA|length=1393bp|location=Sequence derived from alignment at scaffold_4:1241111..1242503- (Nannochloropsis oceanica)
CCTTCCCCTCCTTCCCCTTCTCCTCCTTTCTTCCCTCCCTCCCTCGCTTA
GATACAACGATCCGATCATCTACATCACCGAAAACGGCGTCTCGGGTCCC
AAGGAAGATGAAGTTAAATCAGATGCAGAAGGCTTGAACGACACCTTCCG
TCAGGTGGGCCCTCCCTCCAACCCTCACTCGTTCCTCCTTCCCCTTCCCT
CCCGCTCTATCTTCCTCGTTCTTTCCCTCTCGTCCTCCTGCCTTCTCTCT
GTCTGCCGTACTCATCGACAACAAATGACTTTTATTCCCTCCCATCCCCA
CGTCATATCCATTTCCCTATATCATCCTTCACCTGCCTAATCTCAATCAC
GGCGTTTCCCTATATCACCACCACCTACAGACGTTTATGCAAGGCTATAT
CGCTGAGATGTACAAGGCCATCAAGTTCGACAAGGTACGGCCCTTCCCTT
CCTCCCTCCCTCCCTCCCTCACCTCCCTCGCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCTTCAGGTCAAGGGCGCAGGGTATCTCTACTGATCCTCTCTG
TGTGCTTCGCATAATTTCCTCTAACCACTCCTCCCTCCCTCCCCCCCTCC
CTCCCTCCCTCTCTTCCTTCCTCCCCCCCTCCCTCCCTCTCTCCTTTCCT
CAGGTTAATGTCGCAGGATATTTCTACTGGGCTTTAATGGATAATTTCGA
ATGGGCCGACGGTTACCGCCCTCGTTTCGGGATCATCCGTGTGAATTTCA
CCAGCCAAGCTCGCTATCCTAAGGAAAGCGCACTCATGTATAAGGATATG
ATGACTCGTTTCTCACCTACCGAGGCCGTGCCAGTCATCCCTACTACTCC
TGCTGCTGGTGCAGCTGCTGCTGAAGAAGCAAATCCCGCTGGGCCTGTTG
CACCTATAGCTCCGATTGGTGAAGATGTTTCTCCTGCCCAGCCGGCCCGG
GTGTCAGTAGTACCAGCAGCAGGCGCTCCTTCTACTGTACAAGACGCTGC
CACTGTTGCAGATTTACAAGAAGGACTTATCGCTGCTGCTGATGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCCGCTGATGCTGCTGCTGCTGAT
GCCTCAGCCGCTGCGCCTGTCACTCAGGGTGTTCCCATGGATAGTGCCGG
TGTGGCCCAAACCCACGTGCTTGCGGAAGAGCTTCAGGGATTCGAGGAGG
GAGAAGAGGGAGTGATGGAGGTGGAGGTGGGTGAGGAGGGAGGACAGCAA
CGATTGCGGAAGCTGTAGGAGATGGGTGAAAGAAAGGAATGAGGGAGGGA
GGGAGGCAGGGGGATCGAAATTCGTGTGATATATGATAATTCTTGTAGAA
AGCTCAAAAAGAAGTAAAGACAGTGTGAGAGTTCGCAATGTAA
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Coding sequence (CDS) from alignment at scaffold_4:1241111..1242503-

>mRNA_2274 ID=mRNA_2274|Name=jgi.p|Nanoce1779_2|298677|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_4:1241111..1242503- (Nannochloropsis oceanica)
TGCCGGTGTGGCCCAAACCCACGTGCTTGCGGAAGAGCTTCAGGGATTCG
AGGAGGGAGAAGAGGGAGTGAGTTAATGTCGCAGGATATTTCTACTGGGC
TTTAATGGATAATTTCGAATGGGCCGACGGTTACCGCCCTCGTTTCGGGA
TCATCCGTGTGAATTTCACCAGCCAAGCTCGCTATCCTAAGGAAAGCGCA
CTCATGTATAAGGATATGATGACTCGTTTCTCACCTACCGAGGCCGTGCC
AGTCATCCCTACTACTCCTGCTGCTGGTGCAGCTGCTGCTGAAGAAGCAA
ATCCCGCTGGGCCTGTTGCACCTATAGCTCCGATTGATGCAAGGCTATAT
CGCTGAGATGTACAAGGCCATCAAGTTCGACAAGTGCCGGTGTGGCCCAA
ACCCACGTGCTTGCGGAAGAGCTTCAGGGATTCGAGGAGGGAGAAGAGGG
AGTGAGTTAATGTCGCAGGATATTTCTACTGGGCTTTAATGGATAATTTC
GAATGGGCCGACGGTTACCGCCCTCGTTTCGGGATCATCCGTGTGAATTT
CACCAGCCAAGCTCGCTATCCTAAGGAAAGCGCACTCATGTATAAGGATA
TGATGACTCGTTTCTCACCTACCGAGGCCGTGCCAGTCATCCCTACTACT
CCTGCTGCTGGTGCAGCTGCTGCTGAAGAAGCAAATCCCGCTGGGCCTGT
TGCACCTATAGCTCCGATTGATGCAAGGCTATATCGCTGAGATGTACAAG
GCCATCAAGTTCGACAAGTGCCGGTGTGGCCCAAACCCACGTGCTTGCGG
AAGAGCTTCAGGGATTCGAGGAGGGAGAAGAGGGAGTGAGTTAATGTCGC
AGGATATTTCTACTGGGCTTTAATGGATAATTTCGAATGGGCCGACGGTT
ACCGCCCTCGTTTCGGGATCATCCGTGTGAATTTCACCAGCCAAGCTCGC
TATCCTAAGGAAAGCGCACTCATGTATAAGGATATGATGACTCGTTTCTC
ACCTACCGAGGCCGTGCCAGTCATCCCTACTACTCCTGCTGCTGGTGCAG
CTGCTGCTGAAGAAGCAAATCCCGCTGGGCCTGTTGCACCTATAGCTCCG
ATTGATGCAAGGCTATATCGCTGAGATGTACAAGGCCATCAAGTTCGACA
AG
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Synonyms
Publications